Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 5.8e-75 284.6 204 100.0
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 2.4e-52 209.5 204 59.8
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 7.6e-51 204.5 204 57.4
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 7.6e-51 204.5 203 55.2
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 2.2e-50 203.0 204 73.5
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.5e-49 199.5 204 65.7
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 9.3e-49 197.6 204 62.7
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 9.3e-49 197.6 204 64.2
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 1.2e-48 197.2 206 69.4
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 6.0e-48 194.9 204 64.2
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 7.9e-48 194.5 204 62.3
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 1.3e-47 193.7 231 55.4
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 1.8e-47 193.4 209 62.2
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 3.9e-47 192.2 199 61.8
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 3.9e-47 192.2 204 63.7
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 5.1e-47 191.8 204 73.0
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.5e-46 190.3 206 58.7
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 4.3e-46 188.7 218 66.5
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 4.3e-46 188.7 206 51.5
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 5.7e-46 188.3 204 60.8
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 9.6e-46 187.6 207 78.7
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.8e-45 186.0 208 55.3
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 6.3e-45 184.9 223 59.2
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 8.2e-45 184.5 202 66.8
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 8.2e-45 184.5 202 66.8
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.4e-44 183.7 206 69.4
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 1.4e-44 183.7 219 64.4
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.8e-44 183.3 209 69.4
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.8e-44 183.3 208 68.3
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 2.4e-44 183.0 221 68.3
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 4.1e-44 182.2 209 73.7
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.0e-43 179.9 214 54.2
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 4.5e-43 178.7 207 75.4
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 7.6e-43 177.9 206 62.1
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 2.2e-42 176.4 210 48.6
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 8.5e-42 174.5 221 59.7
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 8.5e-42 174.5 209 66.0
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 8.5e-42 174.5 207 67.6
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 8.5e-42 174.5 200 69.5
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.1e-41 174.1 205 55.1
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.4e-41 173.7 214 60.3
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 1.9e-41 173.3 221 67.4
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.5e-41 172.9 207 59.4
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 4.2e-41 172.2 214 65.4
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 4.2e-41 172.2 226 58.0
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 5.5e-41 171.8 209 59.8
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 7.2e-41 171.4 216 59.7
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 9.3e-41 171.0 217 58.5
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.2e-40 170.6 201 61.2
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 1.6e-40 170.2 199 53.8
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.6e-40 170.2 212 59.4
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 2.7e-40 169.5 204 65.7
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 3.6e-40 169.1 212 58.5
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 3.6e-40 169.1 208 62.5
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 3.6e-40 169.1 204 68.6
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 6.1e-40 168.3 211 48.3
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 7.9e-40 167.9 209 46.9
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.0e-39 167.5 248 56.9
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 2.5e-38 162.9 204 67.6
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 3.3e-38 162.5 224 63.8
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 5.7e-38 161.8 218 50.5
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 2.2e-37 159.8 209 66.0
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 4.8e-37 158.7 207 50.7
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 6.3e-37 158.3 243 56.8
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.1e-36 157.5 240 57.9
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 1.4e-36 157.1 217 56.7
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 2.4e-36 156.4 200 62.5
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.1e-36 156.0 201 46.3
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 3.1e-36 156.0 216 62.0
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 6.9e-36 154.8 212 58.5
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.2e-35 154.1 205 64.9
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 2.6e-35 152.9 199 52.3
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 4.5e-35 152.1 192 50.5
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 5.9e-35 151.8 236 54.7
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 7.7e-35 151.4 200 61.0
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 1.0e-34 151.0 218 54.6
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.7e-34 150.2 203 43.3
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 2.2e-34 149.8 202 62.4
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 2.9e-34 149.4 202 43.1
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 3.8e-34 149.1 208 52.9
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 5.0e-34 148.7 202 57.9
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 6.5e-34 148.3 204 52.5
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 8.5e-34 147.9 195 74.4
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.1e-33 147.5 233 56.7
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 1.1e-33 147.5 197 64.5
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 4.2e-33 145.6 197 58.9
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 5.5e-33 145.2 202 55.9
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 5.5e-33 145.2 206 46.6
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 7.2e-33 144.8 226 43.8
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 7.2e-33 144.8 194 66.0
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 9.4e-33 144.4 207 58.5
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 9.4e-33 144.4 204 56.4
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 9.4e-33 144.4 209 40.7
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 1.6e-32 143.7 204 54.4
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 2.7e-32 142.9 213 52.6
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 4.6e-32 142.1 206 48.1
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.4e-31 140.6 213 54.5
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 1.4e-31 140.6 207 41.1
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 1.8e-31 140.2 212 58.5
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 1.8e-31 140.2 212 58.5
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 2.3e-31 139.8 216 39.4
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 3.9e-31 139.0 211 55.5
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 5.1e-31 138.7 196 55.1
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 6.7e-31 138.3 216 55.1
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 8.8e-31 137.9 142 57.7
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-30 137.5 196 55.1
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.1e-30 137.5 197 54.8
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 2.0e-30 136.7 196 55.1
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 2.6e-30 136.3 197 42.6
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 3.3e-30 136.0 196 54.6
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 4.3e-30 135.6 198 57.6
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 9.7e-30 134.4 206 52.4
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 1.7e-29 133.7 214 44.4
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 2.2e-29 133.3 204 52.9
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.8e-29 132.9 208 62.0
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 4.8e-29 132.1 217 50.2
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 8.2e-29 131.3 210 54.3
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.1e-28 131.0 195 50.3
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 1.4e-28 130.6 210 55.2
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 2.4e-28 129.8 211 46.0
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 2.4e-28 129.8 235 50.2
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 1.2e-27 127.5 208 52.9
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 1.5e-27 127.1 202 47.5
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 2.6e-27 126.3 205 51.2
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 3.4e-27 125.9 203 50.7
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 3.4e-27 125.9 225 54.2
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 3.4e-27 125.9 219 63.9
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.4e-27 125.9 199 52.3
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 5.9e-27 125.2 146 45.9
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 7.7e-27 124.8 205 51.7
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 5.0e-26 122.1 223 51.1
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 6.5e-26 121.7 200 42.5
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.4e-25 120.6 199 54.8
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 1.9e-25 120.2 205 54.1
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 4.2e-25 119.0 196 39.3
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 4.2e-25 119.0 196 39.3
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 7.2e-25 118.2 223 51.1
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 7.2e-25 118.2 205 54.1
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-24 117.5 201 43.8
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.6e-24 117.1 199 38.7
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 2.7e-24 116.3 199 44.2
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 2.7e-24 116.3 129 58.9
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 3.6e-24 115.9 197 37.6
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 6.1e-24 115.2 202 52.0
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 7.9e-24 114.8 204 41.7
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 3.0e-23 112.8 201 43.8
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 6.7e-23 111.7 120 62.5
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 2.6e-22 109.8 201 42.8
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 2.6e-22 109.8 201 43.8
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 5.7e-22 108.6 230 37.0
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 5.7e-22 108.6 196 46.9
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 3.7e-21 105.9 147 41.5
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 5.3e-20 102.1 196 36.7
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 5.3e-20 102.1 196 36.7
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 5.3e-20 102.1 196 36.7
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 7.0e-20 101.7 147 53.1
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 7.0e-20 101.7 147 53.1
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 4.5e-19 99.0 147 55.1
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 4.5e-19 99.0 147 55.1
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 8.5e-18 94.7 196 33.2
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.5e-17 94.0 214 39.3
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 4.7e-16 89.0 197 50.3
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.4e-15 87.4 197 49.7
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.8e-15 87.0 218 45.9
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.0e-15 86.3 197 49.7
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 6.7e-15 85.1 147 49.0
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 4.4e-14 82.4 124 41.9
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.7e-13 80.5 226 32.3
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 8.2e-13 78.2 107 53.3
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 1.0e-10 71.2 44 65.9
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 6.5e-10 68.6 203 27.1
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 7.2e-09 65.1 35 77.1
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.6e-08 63.9 145 26.2
Atru.chr1.737 Acer truncatum HOM05D003968 ORTHO05D004077 8.0e-08 61.6 32 90.6
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 3.0e-07 59.7 46 56.5
Lalb_Chr22g0349911 Lupinus albus HOM05D003968 ORTHO05D004077 4.0e-07 59.3 73 69.9
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 1.5e-06 57.4 135 29.6
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 2.0e-06 57.0 46 54.3
Pp3c6_24870 Physcomitrium patens HOM05D013579 ORTHO05D015305 2.6e-06 56.6 48 50.0
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 2.6e-06 56.6 135 29.6
Pp3c5_5250 Physcomitrium patens HOM05D013579 ORTHO05D015305 5.7e-06 55.5 40 60.0
SMO347G0048 Selaginella moellendorffii HOM05D022619 ORTHO05D026045 7.5e-06 55.1 159 47.2
SMO347G0423 Selaginella moellendorffii HOM05D013579 ORTHO05D004077 7.5e-06 55.1 51 52.9
Pp3c1_28820 Physcomitrium patens HOM05D013579 ORTHO05D003690 9.8e-06 54.7 51 49.0


User provided reference genes

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