Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 3.8e-67 258.1 133 100.0
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 6.3e-38 161.0 137 65.7
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 4.5e-36 154.8 133 63.2
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 5.5e-34 147.9 133 60.9
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 7.2e-34 147.5 134 62.7
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 1.2e-33 146.7 122 61.5
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 2.1e-33 146.0 121 62.0
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 4.7e-33 144.8 124 62.9
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 4.7e-33 144.8 121 62.0
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 6.1e-33 144.4 124 61.3
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 6.1e-33 144.4 121 62.0
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 6.1e-33 144.4 121 61.2
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 2.3e-32 142.5 150 58.0
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 3.0e-32 142.1 124 56.5
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 6.8e-32 141.0 123 61.8
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 1.5e-31 139.8 133 57.9
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 1.5e-31 139.8 127 59.8
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 2.6e-31 139.0 123 58.5
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 1.7e-30 136.3 124 58.9
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 2.2e-30 136.0 124 58.9
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 2.8e-30 135.6 124 54.8
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 2.8e-30 135.6 135 56.3
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 2.8e-30 135.6 124 57.3
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 3.7e-30 135.2 136 55.1
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 4.8e-30 134.8 136 57.4
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 4.8e-30 134.8 122 59.0
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 6.3e-30 134.4 124 60.5
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 8.3e-30 134.0 131 55.7
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 1.1e-29 133.7 131 55.7
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 1.1e-29 133.7 128 57.8
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 1.4e-29 133.3 125 57.6
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 1.8e-29 132.9 131 56.5
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 1.8e-29 132.9 135 57.0
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 3.1e-29 132.1 136 55.1
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 3.1e-29 132.1 136 55.1
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 3.1e-29 132.1 127 60.6
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 3.1e-29 132.1 124 58.1
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 4.1e-29 131.7 136 53.7
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 4.1e-29 131.7 123 60.2
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 4.1e-29 131.7 123 61.0
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 4.1e-29 131.7 123 58.5
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 5.3e-29 131.3 124 57.3
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 5.3e-29 131.3 125 59.2
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 7.0e-29 131.0 125 58.4
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 7.0e-29 131.0 129 56.6
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 9.1e-29 130.6 130 58.5
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 1.2e-28 130.2 136 54.4
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 2.0e-28 129.4 124 54.8
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 2.0e-28 129.4 133 56.4
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 2.7e-28 129.0 136 53.7
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 2.7e-28 129.0 122 54.1
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 4.5e-28 128.3 123 54.5
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 5.9e-28 127.9 124 59.7
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 5.9e-28 127.9 130 57.7
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 7.7e-28 127.5 136 52.9
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.3e-27 126.7 123 58.5
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 1.3e-27 126.7 126 56.3
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 1.7e-27 126.3 121 56.2
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 2.2e-27 125.9 133 55.6
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 2.9e-27 125.6 124 56.5
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 3.8e-27 125.2 133 52.6
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 3.8e-27 125.2 125 56.8
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 5.0e-27 124.8 124 53.2
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 6.5e-27 124.4 129 55.8
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 6.5e-27 124.4 138 50.7
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 8.5e-27 124.0 127 56.7
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 8.5e-27 124.0 124 55.6
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.9e-26 122.9 125 56.8
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 1.9e-26 122.9 125 56.8
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 3.2e-26 122.1 121 54.5
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 4.2e-26 121.7 122 53.3
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 5.5e-26 121.3 124 54.8
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 5.5e-26 121.3 126 54.0
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 7.2e-26 120.9 127 53.5
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 7.2e-26 120.9 124 50.8
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 9.4e-26 120.6 126 53.2
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 1.2e-25 120.2 135 52.6
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 1.2e-25 120.2 129 52.7
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 1.2e-25 120.2 122 54.9
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 1.2e-25 120.2 127 55.1
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 1.6e-25 119.8 122 54.1
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 2.1e-25 119.4 125 56.0
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 2.1e-25 119.4 121 53.7
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.7e-25 119.0 125 55.2
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.6e-25 118.6 125 56.0
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 3.6e-25 118.6 123 51.2
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 4.7e-25 118.2 127 54.3
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 8.0e-25 117.5 123 53.7
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 8.0e-25 117.5 123 53.7
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 1.0e-24 117.1 126 53.2
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.8e-24 116.3 121 52.9
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.8e-24 116.3 122 52.5
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 3.0e-24 115.5 122 52.5
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 3.0e-24 115.5 122 51.6
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 4.0e-24 115.2 123 51.2
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 6.8e-24 114.4 128 52.3
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 2.6e-23 112.5 128 50.8
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 3.4e-23 112.1 125 51.2
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 3.4e-23 112.1 133 48.9
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 7.5e-23 110.9 125 52.0
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 2.2e-22 109.4 122 50.0
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.4e-21 106.7 126 47.6
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 2.4e-21 105.9 125 49.6
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 3.1e-21 105.5 65 70.8
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 5.4e-21 104.8 128 50.0
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 9.1e-21 104.0 125 47.2
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 5.9e-20 101.3 125 50.4
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 7.7e-20 100.9 121 47.1
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 7.7e-20 100.9 124 45.2
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.0e-19 100.5 126 45.2
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 1.0e-19 100.5 133 48.1
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 3.8e-19 98.6 136 42.6
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 6.6e-19 97.8 113 47.8
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 4.2e-18 95.1 133 43.6
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 9.5e-18 94.0 130 45.4
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.2e-17 93.6 118 44.9
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.2e-17 93.6 136 44.1
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 3.6e-17 92.0 124 43.5
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 3.6e-17 92.0 126 41.3
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 8.0e-17 90.9 88 54.5
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 6.8e-16 87.8 101 55.4
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 4.4e-15 85.1 116 41.4
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 7.5e-15 84.3 133 39.8
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.7e-14 83.2 54 68.5
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 8.3e-14 80.9 60 56.7
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 8.3e-14 80.9 67 58.2
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 9.2e-13 77.4 65 50.8
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 2.0e-12 76.3 125 34.4
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 3.5e-12 75.5 123 37.4
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 7.8e-12 74.3 73 49.3
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 2.3e-11 72.8 82 41.5
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 5.0e-11 71.6 97 41.2
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 3.3e-10 68.9 74 44.6
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 5.6e-10 68.2 45 64.4
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 7.3e-10 67.8 120 35.8
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.0e-08 63.9 61 45.9
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 8.9e-08 60.8 49 55.1
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 8.9e-08 60.8 62 46.8
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 1.3e-06 57.0 140 30.7
Nitab4.5_0011997g0010 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.7e-06 56.6 122 35.2
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 2.9e-06 55.8 114 34.2
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 4.9e-06 55.1 90 40.0
Nitab4.5_0002284g0060 Nicotiana tabacum HOM05D005269 ORTHO05D006429 6.4e-06 54.7 122 34.4


User provided reference genes

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