Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 3.6e-193 677.9 309 100.0
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 1.8e-192 675.6 308 100.0
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 8.5e-179 630.2 308 92.2
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 1.4e-176 622.9 308 89.9
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.5e-175 619.4 305 91.1
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 2.0e-175 619.0 309 89.0
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 7.5e-175 617.1 307 90.2
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 7.5e-175 617.1 307 90.6
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 2.8e-174 615.1 308 89.0
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 3.7e-174 614.8 302 90.1
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 1.8e-173 612.5 323 86.1
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 2.4e-173 612.1 309 87.4
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 2.4e-173 612.1 309 87.4
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 4.1e-173 611.3 308 88.6
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.2e-172 609.8 300 89.0
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 1.2e-172 609.8 300 89.3
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 2.7e-172 608.6 306 88.9
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 2.7e-172 608.6 302 89.4
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 3.5e-172 608.2 306 88.6
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 4.5e-172 607.8 305 89.5
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 5.9e-172 607.4 302 90.1
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 5.9e-172 607.4 308 89.0
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 7.7e-172 607.1 306 88.6
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 7.7e-172 607.1 299 90.6
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 1.0e-171 606.7 300 90.0
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.0e-171 606.7 300 88.7
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 1.3e-171 606.3 308 89.0
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 1.7e-171 605.9 308 88.0
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 2.2e-171 605.5 300 88.3
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 2.2e-171 605.5 308 87.7
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 3.8e-171 604.7 308 87.3
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 3.8e-171 604.7 308 87.3
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 5.0e-171 604.4 303 88.8
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 6.5e-171 604.0 302 90.1
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 6.5e-171 604.0 307 87.9
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 6.5e-171 604.0 306 87.9
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.5e-170 602.8 321 85.0
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.9e-170 602.4 308 87.0
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 1.9e-170 602.4 307 87.6
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 2.5e-170 602.1 300 88.7
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 3.2e-170 601.7 299 88.6
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 7.2e-170 600.5 313 86.6
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.6e-169 599.4 308 86.7
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 2.1e-169 599.0 303 89.1
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 2.1e-169 599.0 305 87.9
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 2.7e-169 598.6 306 87.6
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 2.7e-169 598.6 300 89.0
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 6.1e-169 597.4 309 87.1
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 6.1e-169 597.4 302 87.4
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 1.4e-168 596.3 306 86.3
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 3.0e-168 595.1 299 89.0
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 5.2e-168 594.3 308 87.0
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 8.8e-168 593.6 299 88.6
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 2.0e-167 592.4 327 83.8
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 2.6e-167 592.0 302 86.8
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.7e-166 589.3 329 81.2
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 2.8e-166 588.6 334 81.4
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 8.3e-166 587.0 299 87.3
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 8.3e-166 587.0 300 88.3
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 1.4e-165 586.3 308 85.7
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 1.4e-165 586.3 302 87.1
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 2.4e-165 585.5 308 84.1
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 7.0e-165 583.9 300 86.7
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 7.0e-165 583.9 305 86.6
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 7.0e-165 583.9 305 86.6
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 9.1e-165 583.6 300 86.7
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 1.2e-164 583.2 300 86.3
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 2.0e-164 582.4 303 86.5
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 7.7e-164 580.5 300 87.0
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 1.0e-163 580.1 304 86.5
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 5.0e-163 577.8 310 84.2
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 8.6e-163 577.0 311 83.3
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 8.6e-163 577.0 311 83.3
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 1.1e-162 576.6 311 83.3
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 1.1e-162 576.6 320 80.9
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 3.3e-162 575.1 306 83.7
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 1.6e-161 572.8 300 84.7
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.6e-161 572.8 312 82.7
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 1.6e-161 572.8 300 85.0
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 2.1e-161 572.4 300 85.7
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 2.8e-161 572.0 305 83.0
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 3.6e-161 571.6 303 83.2
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 6.1e-161 570.9 311 82.6
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 1.4e-160 569.7 305 83.3
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 1.4e-160 569.7 311 82.3
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 4.0e-160 568.2 300 83.3
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 5.2e-160 567.8 311 82.0
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 4.4e-159 564.7 302 82.5
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 4.1e-157 558.1 300 83.7
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 2.7e-156 555.4 307 80.1
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 2.9e-155 552.0 310 79.0
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 1.9e-154 549.3 273 88.6
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 9.5e-154 547.0 315 78.7
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 4.7e-153 544.7 300 80.0
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 5.2e-152 541.2 313 78.6
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 8.3e-150 533.9 341 72.7
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 2.1e-145 519.2 311 75.9
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 9.2e-141 503.8 247 91.1
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 3.0e-139 498.8 299 75.6
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 7.3e-138 494.2 245 89.4
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 2.0e-135 486.1 305 71.5
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 5.4e-133 478.0 302 71.2
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 1.4e-128 463.4 288 71.2
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 1.5e-122 443.4 303 66.7
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 8.1e-121 437.6 311 67.5
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 4.0e-112 408.7 307 64.8
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 4.6e-108 395.2 320 60.0
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 1.7e-94 350.1 244 70.1
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 2.1e-84 316.6 196 77.0
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 2.6e-71 273.1 144 85.4
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.2e-70 270.0 132 87.9
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 5.2e-67 258.8 224 57.1
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 1.5e-66 257.3 133 86.5
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.6e-63 247.3 120 90.8
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 4.8e-57 225.7 311 44.4
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 7.7e-55 218.4 202 58.9
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 2.8e-49 199.9 119 77.3
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 1.5e-37 161.0 213 46.0
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 2.0e-31 140.6 86 72.1
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 4.4e-26 122.9 90 64.4
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 1.6e-23 114.4 55 89.1
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 1.7e-22 110.9 70 68.6
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 8.6e-22 108.6 61 77.0
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 6.4e-17 92.4 68 64.7
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 2.1e-12 77.4 132 38.6
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 4.0e-11 73.2 47 72.3
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 5.4e-08 62.8 43 62.8
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 1.7e-06 57.8 26 92.3
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 5.1e-06 56.2 47 53.2


User provided reference genes

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