Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0405F.1_g145830 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 3.8e-277 957.6 498 100.0
Hma1.2p1_2126F.1_g314575 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 3.8e-277 957.6 498 100.0
Hma1.2p1_0405F.1_g145840 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 2.4e-271 938.3 490 100.0
Hma1.2p1_2126F.1_g314577 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 2.4e-271 938.3 490 100.0
Dinv12805 Davidia involucrata HOM05D006091 ORTHO05D006421 3.8e-213 745.0 503 78.1
Actinidia23366 Actinidia chinensis HOM05D006091 ORTHO05D006421 1.5e-209 733.0 501 76.4
CSS0012975 Camellia sinensis var. sinensis HOM05D006091 ORTHO05D006421 2.3e-202 709.1 500 76.4
Thecc.01G213100 Theobroma cacao HOM05D006091 ORTHO05D006421 8.9e-194 680.6 503 68.0
Rhsim13G0051700 Rhododendron simsii HOM05D006091 ORTHO05D006421 7.3e-188 661.0 502 69.7
Lj2C1118G19 Lonicera japonica HOM05D006091 ORTHO05D006421 1.2e-187 660.2 531 67.4
Potri.002G249400 Populus trichocarpa HOM05D006091 ORTHO05D006421 1.6e-187 659.8 503 69.4
COL.COLO4_04501 Corchorus olitorius HOM05D006091 ORTHO05D006421 4.7e-187 658.3 504 66.5
Atru.chr6.1598 Acer truncatum HOM05D006091 ORTHO05D006421 1.8e-186 656.4 503 68.4
TAR362G0288 Trochodendron aralioides HOM05D006091 ORTHO05D006421 6.8e-186 654.4 503 69.4
QL09p045696 Quercus lobata HOM05D006091 ORTHO05D006421 1.4e-183 646.7 503 68.4
Nitab4.5_0000038g0010 Nicotiana tabacum HOM05D006091 ORTHO05D006421 3.2e-183 645.6 503 66.0
Nitab4.5_0009574g0010 Nicotiana tabacum HOM05D006091 ORTHO05D006421 4.1e-183 645.2 500 66.2
TWI75G0482 Tripterygium wilfordii HOM05D006091 ORTHO05D006421 4.1e-183 645.2 503 67.8
vmacro02807 Vaccinium macrocarpon HOM05D006091 ORTHO05D006421 1.3e-181 640.2 523 67.5
MD05G1163900 Malus domestica HOM05D006091 ORTHO05D006421 3.0e-181 639.0 503 67.4
arahy.Tifrunner.gnm1.ann1.ZLM6RM Arachis hypogaea HOM05D006091 ORTHO05D006421 3.9e-181 638.6 502 65.1
RcHm_v2.0_Chr6g0283291 Rosa chinensis HOM05D006091 ORTHO05D006421 1.5e-180 636.7 503 67.2
Manes.12G052100 Manihot esculenta HOM05D006091 ORTHO05D006421 1.2e-179 633.6 504 65.1
MSTRG.17976 Avicennia marina HOM05D006091 ORTHO05D006421 2.8e-179 632.5 504 64.7
Gohir.A11G141600 Gossypium hirsutum HOM05D006091 ORTHO05D006421 3.6e-179 632.1 505 64.6
Gorai.001G102700 Gossypium raimondii HOM05D006091 ORTHO05D006421 3.6e-179 632.1 503 65.2
Gohir.D07G095400 Gossypium hirsutum HOM05D006091 ORTHO05D006421 4.7e-179 631.7 503 65.4
Peaxi162Scf00054g00172 Petunia axillaris HOM05D006091 ORTHO05D006421 8.1e-179 630.9 503 64.2
Nn1g08059 Nelumbo nucifera HOM05D006091 ORTHO05D006421 1.4e-178 630.2 503 66.8
ECA236G3389 Erigeron canadensis HOM05D006091 ORTHO05D006421 1.8e-178 629.8 503 66.4
FvH4_2g17990 Fragaria vesca HOM05D006091 ORTHO05D006421 1.8e-178 629.8 503 67.4
Oeu003643.1 Olea europaea HOM05D006091 ORTHO05D006421 3.1e-178 629.0 526 64.1
CAN.G99.2 Capsicum annuum HOM05D006091 ORTHO05D006421 4.0e-178 628.6 503 64.6
Gohir.D11G147900 Gossypium hirsutum HOM05D006091 ORTHO05D006421 2.0e-177 626.3 505 64.4
Cc01_g16310 Coffea canephora HOM05D006091 ORTHO05D006421 3.4e-177 625.5 503 65.4
Ca_23191_v3 Cicer arietinum L. HOM05D006091 ORTHO05D006421 4.4e-177 625.2 500 64.2
Gorai.007G158500 Gossypium raimondii HOM05D006091 ORTHO05D006421 4.4e-177 625.2 505 64.2
FAN27G2037 Fragaria x ananassa HOM05D006091 ORTHO05D006421 5.8e-177 624.8 501 66.9
Migut.N00655 Erythranthe guttata HOM05D006091 ORTHO05D006421 9.8e-177 624.0 503 64.2
HanXRQChr04g0107951 Helianthus annuus HOM05D006091 ORTHO05D006421 4.9e-176 621.7 504 66.7
CiPaw.13G053400 Carya illinoinensis HOM05D006091 ORTHO05D006421 8.3e-176 620.9 441 69.4
Gohir.A07G090700 Gossypium hirsutum HOM05D006091 ORTHO05D006421 1.1e-175 620.5 503 64.6
Ciclev10030603m.g Citrus clementina HOM05D006091 ORTHO05D006421 7.1e-175 617.8 501 65.3
DCAR_004762 Daucus carota HOM05D006091 ORTHO05D006421 1.9e-172 609.8 504 61.5
THA.LOC104802652 Tarenaya hassleriana HOM05D006091 ORTHO05D006421 2.5e-172 609.4 502 63.3
Sopen09g020500 Solanum pennellii HOM05D006091 ORTHO05D006421 4.3e-172 608.6 503 62.4
FAN24G1597 Fragaria x ananassa HOM05D006091 ORTHO05D006421 3.6e-171 605.5 503 66.0
Eucgr.H00733 Eucalyptus grandis HOM05D006091 ORTHO05D006421 8.1e-171 604.4 502 63.5
SGA_v2.0_scaffold77G25288 Striga asiatica HOM05D006091 ORTHO05D006421 8.1e-171 604.4 500 63.6
Lalb_Chr13g0291021 Lupinus albus HOM05D006091 ORTHO05D006421 2.3e-170 602.8 503 64.0
GSVIVG01005280001 Vitis vinifera HOM05D006091 ORTHO05D006421 3.1e-170 602.4 424 69.3
PGR083G0226 Punica granatum HOM05D006091 ORTHO05D006421 5.2e-170 601.7 502 63.9
Carub.0003s0694 Capsella rubella HOM05D006091 ORTHO05D006421 1.5e-169 600.1 502 62.7
FAN15G2626 Fragaria x ananassa HOM05D006091 ORTHO05D006421 4.4e-169 598.6 501 65.7
AL3G18700 Arabidopsis lyrata HOM05D006091 ORTHO05D006421 5.8e-169 598.2 502 62.4
Cpa.g.sc8.88 Carica papaya HOM05D006091 ORTHO05D006421 9.9e-169 597.4 501 64.9
CANSAT01G2939 Cannabis sativa HOM05D006091 ORTHO05D006421 2.2e-168 596.3 504 62.9
Psat0s4060g0040 Pisum sativum HOM05D006091 ORTHO05D006421 2.2e-168 596.3 502 59.8
Medtr8g011610 Medicago truncatula HOM05D006091 ORTHO05D006421 1.9e-167 593.2 503 61.6
AT3G07400 Arabidopsis thaliana HOM05D006091 ORTHO05D006421 3.2e-167 592.4 502 62.2
arahy.Tifrunner.gnm1.ann1.23KP9R Arachis hypogaea HOM05D006091 ORTHO05D006421 4.1e-167 592.0 502 62.2
Lsat_1_v5_gn_8_88561 Lactuca sativa HOM05D006091 ORTHO05D006421 5.4e-167 591.7 506 62.8
CiPaw.14G042600 Carya illinoinensis HOM05D006091 ORTHO05D006421 1.2e-166 590.5 503 64.0
BolC5t34643H Brassica oleracea HOM05D006091 ORTHO05D006421 1.6e-166 590.1 501 60.9
PSO017G2440 Papaver somniferum HOM05D006091 ORTHO05D006421 4.6e-166 588.6 504 62.5
ClCG09G008430 Citrullus lanatus HOM05D006091 ORTHO05D006421 6.0e-166 588.2 504 63.1
BraA05t22809Z Brassica rapa HOM05D006091 ORTHO05D006421 1.0e-165 587.4 501 61.7
Hund18485 Selenicereus undatus HOM05D006091 ORTHO05D006421 1.3e-165 587.0 505 61.6
PSO675G5723 Papaver somniferum HOM05D006091 ORTHO05D006421 8.6e-165 584.3 504 62.3
Glyma.16G084200 Glycine max HOM05D006091 ORTHO05D006421 1.1e-164 583.9 501 63.1
CARHR082040 Cardamine hirsuta HOM05D006091 ORTHO05D006421 1.9e-164 583.2 503 62.0
A05p40780 Brassica napus HOM05D006091 ORTHO05D006421 3.3e-164 582.4 501 61.1
Sc05g0001800 Simmondsia chinensis HOM05D006091 ORTHO05D006421 3.3e-164 582.4 443 64.6
MELO3C021115.2 Cucumis melo HOM05D006091 ORTHO05D006421 4.3e-164 582.0 504 63.3
Glyma.03G089000 Glycine max HOM05D006091 ORTHO05D006421 4.3e-164 582.0 501 62.7
C05p59890 Brassica napus HOM05D006091 ORTHO05D006421 1.6e-163 580.1 501 61.5
Sp3g06320 Schrenkiella parvula HOM05D006091 ORTHO05D006421 6.2e-163 578.2 502 60.6
CsaV3_7G026640 Cucumis sativus L. HOM05D006091 ORTHO05D006421 1.1e-162 577.4 504 62.7
Aqoxy2G03964 Aquilegia oxysepala HOM05D006091 ORTHO05D006421 3.1e-162 575.9 503 60.2
Aa31LG5G17970 Aethionema arabicum HOM05D006091 ORTHO05D006421 5.2e-162 575.1 503 60.8
Lj3g0004892 Lotus japonicus HOM05D006091 ORTHO05D006421 1.5e-161 573.5 502 62.2
Solyc09g056350.4 Solanum lycopersicum HOM05D006091 ORTHO05D006421 2.6e-161 572.8 500 59.8
MD10G1153600 Malus domestica HOM05D006091 ORTHO05D006421 1.3e-160 570.5 503 63.2
AUR62001194 Chenopodium quinoa HOM05D006091 ORTHO05D006421 6.4e-160 568.2 505 61.0
AUR62022134 Chenopodium quinoa HOM05D006091 ORTHO05D006421 6.4e-160 568.2 503 61.0
Prupe.8G192400 Prunus persica HOM05D006091 ORTHO05D006421 8.4e-160 567.8 444 65.1
Ah.08g218720 Amaranthus hybridus HOM05D006091 ORTHO05D006421 7.8e-158 561.2 502 60.2
Thhalv10019992m.g Eutrema salsugineum HOM05D006091 ORTHO05D006421 5.8e-153 545.0 501 59.5
Sed0015233 Sechium edule HOM05D006091 ORTHO05D006421 2.1e-150 536.6 504 59.3
Haze_03313 Corylus avellana HOM05D006091 ORTHO05D006421 8.7e-133 478.0 406 67.5
ATR0609G072 Amborella trichopoda HOM05D006091 ORTHO05D006421 4.3e-132 475.7 456 56.1
Os02g0481700 Oryza sativa ssp. japonica HOM05D006091 ORTHO05D006421 4.1e-130 469.2 506 53.8
Phvul.010G030600 Phaseolus vulgaris HOM05D006091 ORTHO05D006421 9.0e-130 468.0 390 61.3
unitig_699.g19751 Utricularia gibba HOM05D006091 ORTHO05D006421 2.6e-129 466.5 501 51.9
Zm00001eb202960 Zea mays HOM05D006091 ORTHO05D006421 2.5e-124 449.9 508 52.6
HPP92_009934 Vanilla planifolia HOM05D006091 ORTHO05D006421 2.2e-120 436.8 500 52.4
CDE05G1549 Ceratophyllum demersum HOM05D006091 ORTHO05D006421 6.1e-102 375.6 486 48.4
TPR.G1980 Trifolium pratense HOM05D006091 ORTHO05D006421 4.0e-101 372.9 287 62.0
Pp3c23_8470 Physcomitrium patens HOM05D006091 ORTHO05D006421 1.6e-94 350.9 504 42.1
SEGI_05193 Sequoiadendron giganteum HOM05D006091 ORTHO05D006421 6.8e-93 345.5 523 40.9
SMO117G0101 Selaginella moellendorffii HOM05D006091 ORTHO05D006421 8.3e-91 338.6 507 43.0
Mapoly0057s0040 Marchantia polymorpha HOM05D006091 ORTHO05D006421 1.4e-90 337.8 516 41.5
CBR_g37499 Chara braunii HOM05D006091 ORTHO05D000002 9.2e-58 228.8 390 38.2
SEGI_39275 Sequoiadendron giganteum HOM05D006091 ORTHO05D006421 1.5e-39 168.3 251 44.2
Haze_03314 Corylus avellana HOM05D006091 ORTHO05D006421 1.9e-39 167.9 94 79.8
Sp7g12380 Schrenkiella parvula HOM05D002557 ORTHO05D002563 4.3e-39 166.8 125 58.4
BcaC05g29533 Brassica carinata HOM05D006091 ORTHO05D006421 5.8e-20 103.2 114 53.5
SMO364G0811 Selaginella moellendorffii HOM05D011999 ORTHO05D006421 6.9e-13 79.7 207 31.4
MBI16_g37173_MAGBIO Magnolia biondii HOM05D006091 ORTHO05D006421 3.8e-11 73.9 47 66.0
PSO478G3557 Papaver somniferum HOM05D003218 ORTHO05D003702 8.2e-06 56.2 37 59.5


User provided reference genes

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