Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 5.3e-287 990.3 501 100.0
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 3.1e-223 778.5 511 79.3
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 4.5e-222 774.6 507 79.5
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 2.8e-216 755.4 501 78.4
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 9.2e-215 750.4 514 74.9
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 2.3e-213 745.7 515 75.1
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 2.9e-213 745.3 508 74.2
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.1e-212 743.4 515 73.2
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 1.8e-210 736.1 504 76.2
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 4.1e-207 724.9 514 74.9
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 2.0e-206 722.6 522 74.5
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 4.6e-206 721.5 516 74.2
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 6.0e-206 721.1 513 75.6
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 6.0e-206 721.1 514 74.3
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.0e-205 720.3 515 74.2
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 3.0e-205 718.8 521 73.9
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 6.6e-205 717.6 507 73.2
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 3.3e-204 715.3 512 75.2
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 3.3e-204 715.3 510 73.1
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 3.3e-204 715.3 513 73.1
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 4.3e-204 714.9 517 72.0
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 5.6e-204 714.5 514 73.5
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 8.0e-203 710.7 504 74.0
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 2.0e-201 706.1 509 71.9
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 7.5e-201 704.1 519 70.3
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 2.9e-200 702.2 523 71.3
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 6.4e-200 701.0 512 71.3
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 6.4e-200 701.0 514 72.0
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 3.5e-198 695.3 502 72.7
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 3.5e-198 695.3 508 72.0
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 4.6e-198 694.9 515 71.5
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 6.0e-198 694.5 511 71.8
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 7.8e-198 694.1 509 73.1
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 3.9e-197 691.8 537 71.7
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 1.1e-196 690.3 515 71.1
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 1.5e-196 689.9 512 69.9
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 1.9e-196 689.5 511 72.2
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 2.5e-196 689.1 512 71.9
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 9.5e-196 687.2 503 72.2
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.2e-195 686.8 515 70.7
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 1.2e-195 686.8 503 72.4
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.6e-195 686.4 517 70.2
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 1.1e-194 683.7 513 70.6
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 1.8e-194 682.9 508 72.2
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 2.3e-194 682.6 511 71.0
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 3.1e-194 682.2 515 69.9
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 4.0e-194 681.8 515 70.3
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 5.2e-194 681.4 513 70.2
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 8.9e-194 680.6 515 69.9
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 1.2e-193 680.2 508 70.3
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 2.6e-193 679.1 507 70.0
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 5.8e-193 677.9 515 69.7
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 4.9e-192 674.9 508 71.1
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 1.9e-191 672.9 517 69.4
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 2.4e-191 672.5 508 70.1
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 3.2e-191 672.2 513 69.4
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 4.1e-191 671.8 514 68.5
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 2.1e-190 669.5 518 69.9
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 2.1e-190 669.5 509 69.4
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 1.1e-188 663.7 507 69.4
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.9e-188 662.9 457 72.9
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 4.3e-188 661.8 465 74.2
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 6.2e-187 657.9 519 67.4
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 6.2e-187 657.9 511 67.9
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 8.1e-187 657.5 523 66.2
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 4.0e-186 655.2 514 66.1
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 5.2e-186 654.8 511 70.1
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 2.0e-185 652.9 506 68.2
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 3.4e-185 652.1 526 68.3
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 4.4e-185 651.7 518 67.6
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 5.8e-185 651.4 521 68.3
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 4.2e-183 645.2 506 67.2
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 1.2e-182 643.7 508 67.9
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 1.6e-182 643.3 514 66.7
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 1.6e-182 643.3 508 68.1
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 2.7e-182 642.5 524 68.9
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 6.0e-182 641.3 513 68.4
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 7.8e-182 641.0 510 66.9
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.0e-181 640.6 509 67.8
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 2.3e-181 639.4 509 67.6
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 8.7e-181 637.5 509 67.4
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 4.3e-180 635.2 525 65.9
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 4.7e-179 631.7 507 66.1
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 6.2e-179 631.3 506 69.2
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 1.1e-178 630.6 508 66.9
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 4.0e-178 628.6 520 66.5
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 5.3e-178 628.2 510 66.5
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 5.8e-177 624.8 484 67.4
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 1.7e-176 623.2 453 71.5
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 2.4e-175 619.4 511 66.9
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 3.2e-175 619.0 516 66.1
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 3.0e-173 612.5 511 65.2
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 6.6e-173 611.3 529 62.0
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 8.1e-171 604.4 529 61.6
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.4e-170 602.8 505 66.5
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 5.8e-169 598.2 505 65.0
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 1.3e-168 597.0 503 65.0
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 4.9e-168 595.1 503 64.8
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 3.2e-167 592.4 501 66.1
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 2.1e-166 589.7 501 65.3
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 4.6e-166 588.6 504 64.9
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 1.8e-165 586.6 499 65.5
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 2.3e-165 586.3 499 65.5
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 7.6e-161 571.2 525 60.8
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 1.2e-153 547.4 524 59.4
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 2.8e-147 526.2 485 61.0
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 2.0e-145 520.0 512 57.4
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 1.0e-144 517.7 512 57.4
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 4.2e-143 512.3 509 57.2
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 4.3e-140 502.3 529 53.9
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 1.9e-127 460.3 504 54.0
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 2.5e-127 459.9 526 53.0
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 2.1e-126 456.8 541 51.0
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 3.7e-123 446.0 305 72.5
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 1.8e-122 443.7 504 52.8
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 1.0e-120 438.0 518 51.5
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 2.1e-102 377.1 499 48.9
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 1.3e-96 357.8 288 66.7
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 8.0e-94 348.6 573 41.7
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 1.3e-64 251.5 286 51.4
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 4.9e-59 233.0 333 43.8
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 7.6e-52 209.1 203 60.6
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 2.3e-40 171.0 277 40.1
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 1.4e-24 118.6 97 66.0
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 2.3e-24 117.9 482 25.9
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 7.7e-20 102.8 69 73.9
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 5.0e-19 100.1 550 26.0
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 6.5e-19 99.8 116 49.1
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 1.1e-15 89.0 54 74.1
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 2.4e-13 81.3 63 63.5
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.0e-12 78.2 54 63.0
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 4.5e-12 77.0 210 31.9
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 4.2e-10 70.5 69 59.4
PRCOL_00002377 Prasinoderma coloniale HOM05D005917 ORTHO05D333437 2.2e-06 58.2 339 21.8


User provided reference genes

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