Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.7e-57 225.7 108 100.0
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.4e-40 169.5 108 72.2
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 1.2e-34 149.8 110 64.5
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 3.4e-34 148.3 107 62.6
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 3.8e-33 144.8 108 58.3
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.1e-32 143.3 110 66.4
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 7.2e-32 140.6 110 62.7
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 9.3e-32 140.2 113 61.9
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.2e-31 139.8 114 61.4
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 2.1e-31 139.0 109 61.5
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 3.6e-31 138.3 110 61.8
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 4.6e-31 137.9 109 60.6
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 3.0e-30 135.2 106 61.3
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 8.8e-30 133.7 108 59.3
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 1.1e-29 133.3 110 56.4
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 1.9e-29 132.5 111 58.6
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 7.4e-29 130.6 108 60.2
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.3e-28 129.8 108 55.6
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.2e-28 129.0 111 56.8
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.7e-28 128.3 111 59.5
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.7e-28 128.3 111 59.5
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 8.2e-28 127.1 112 53.6
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 1.1e-27 126.7 119 56.3
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 1.1e-27 126.7 109 56.9
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 1.4e-27 126.3 108 55.6
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.4e-27 126.3 109 56.9
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 1.8e-27 125.9 122 54.9
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 3.1e-27 125.2 108 52.8
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 9.1e-27 123.6 111 56.8
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 9.1e-27 123.6 111 56.8
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 9.1e-27 123.6 111 56.8
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 2.0e-26 122.5 110 52.7
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 2.0e-26 122.5 111 55.0
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 2.0e-26 122.5 110 57.3
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 2.0e-26 122.5 108 56.5
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.6e-26 122.1 105 56.2
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.5e-26 121.3 108 52.8
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 4.5e-26 121.3 108 55.6
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 7.7e-26 120.6 109 54.1
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 7.7e-26 120.6 98 61.2
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 1.0e-25 120.2 109 56.9
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.3e-25 119.8 111 54.1
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.7e-25 119.4 110 55.5
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.2e-25 119.0 112 55.4
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 2.2e-25 119.0 108 55.6
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 2.2e-25 119.0 114 53.5
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.2e-25 119.0 96 53.1
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.9e-25 118.6 109 53.2
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.9e-25 118.6 109 53.2
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.9e-25 118.6 113 54.0
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.9e-25 118.6 113 54.0
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 2.9e-25 118.6 112 52.7
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 3.8e-25 118.2 108 52.8
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 5.0e-25 117.9 112 50.9
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 5.0e-25 117.9 110 52.7
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 5.0e-25 117.9 112 54.5
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 6.5e-25 117.5 110 52.7
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 8.5e-25 117.1 108 50.9
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 8.5e-25 117.1 112 53.6
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.1e-24 116.7 109 53.2
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 1.1e-24 116.7 108 51.9
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.4e-24 116.3 110 54.5
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 1.9e-24 115.9 108 50.9
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 3.2e-24 115.2 109 53.2
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 4.2e-24 114.8 109 54.1
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 5.5e-24 114.4 112 50.9
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.2e-23 113.2 116 52.6
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.6e-23 112.8 116 52.6
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 2.7e-23 112.1 103 53.4
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 4.7e-23 111.3 110 50.0
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 7.9e-23 110.5 112 53.6
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 1.0e-22 110.2 112 51.8
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 1.4e-22 109.8 94 64.9
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 3.0e-22 108.6 115 51.3
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 3.9e-22 108.2 109 49.5
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 3.9e-22 108.2 123 48.0
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 4.4e-21 104.8 101 47.5
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 4.4e-21 104.8 116 48.3
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 4.4e-21 104.8 113 53.1
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 4.4e-21 104.8 108 48.1
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 4.4e-21 104.8 110 50.0
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 1.3e-20 103.2 114 50.9
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 1.3e-20 103.2 114 50.9
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 1.3e-20 103.2 108 48.1
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.7e-20 102.8 102 48.0
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 2.8e-20 102.1 97 51.5
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 6.3e-20 100.9 99 50.5
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 6.3e-20 100.9 108 48.1
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.4e-19 99.8 93 55.9
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.8e-19 99.4 106 47.2
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 3.1e-19 98.6 97 52.6
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 3.1e-19 98.6 94 51.1
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 6.9e-19 97.4 123 47.2
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 9.1e-19 97.1 94 51.1
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 1.2e-18 96.7 93 50.5
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 2.0e-18 95.9 115 43.5
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 2.6e-18 95.5 108 47.2
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 5.9e-18 94.4 112 45.5
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 1.0e-17 93.6 108 46.3
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 1.0e-17 93.6 108 46.3
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 1.7e-17 92.8 108 45.4
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 2.2e-17 92.4 112 42.9
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.2e-17 92.4 108 46.3
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 2.9e-17 92.0 108 45.4
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 2.9e-17 92.0 115 42.6
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 3.8e-17 91.7 111 45.0
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 5.0e-17 91.3 108 46.3
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 5.0e-17 91.3 89 53.9
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 5.0e-17 91.3 97 42.3
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 8.5e-17 90.5 108 43.5
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 1.4e-16 89.7 108 44.4
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 1.4e-16 89.7 108 44.4
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 1.9e-16 89.4 108 44.4
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 2.5e-16 89.0 117 41.9
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 2.5e-16 89.0 115 43.5
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 2.5e-16 89.0 101 45.5
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 4.2e-16 88.2 112 46.4
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 5.5e-16 87.8 108 44.4
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 5.5e-16 87.8 109 47.7
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 7.2e-16 87.4 108 43.5
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 7.2e-16 87.4 108 43.5
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 7.2e-16 87.4 107 43.0
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 2.1e-15 85.9 112 43.8
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 2.7e-15 85.5 100 45.0
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 3.6e-15 85.1 108 42.6
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 4.7e-15 84.7 108 40.7
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.0e-14 83.6 96 42.7
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.0e-14 83.6 111 43.2
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.4e-14 83.2 112 42.0
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 1.8e-14 82.8 97 45.4
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.5e-13 79.7 100 44.0
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 1.5e-13 79.7 102 46.1
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.0e-13 79.3 112 42.0
MBI16_g31702_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 5.7e-13 77.8 108 38.0
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 7.4e-13 77.4 94 45.7
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.8e-12 75.5 97 41.2
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 6.3e-12 74.3 91 42.9
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 1.4e-11 73.2 96 39.6
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 1.4e-11 73.2 82 42.7
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 5.3e-11 71.2 104 42.3
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 7.0e-11 70.9 67 44.8
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 9.1e-11 70.5 112 39.3
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 1.5e-08 63.2 110 38.2
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 5.5e-08 61.2 110 38.2
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 9.4e-08 60.5 120 35.8
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 9.4e-08 60.5 61 45.9


User provided reference genes

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