Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 0.0e+00 1301.6 684 100.0
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 6.4e-227 791.2 706 62.9
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.4e-226 789.3 695 61.4
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.3e-224 783.5 704 61.5
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 6.6e-224 781.2 704 61.2
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 4.6e-209 731.9 698 59.0
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 4.3e-207 725.3 700 57.1
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 2.2e-195 686.4 695 56.3
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 1.8e-189 666.8 707 53.2
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 5.1e-184 648.7 705 54.5
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 6.1e-177 625.2 693 51.7
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 7.9e-177 624.8 696 49.7
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 3.0e-176 622.9 698 49.0
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 6.7e-176 621.7 709 52.8
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 6.7e-176 621.7 688 51.3
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 1.1e-175 620.9 704 53.6
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.5e-172 610.5 699 50.9
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 2.0e-172 610.1 701 51.1
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 1.3e-171 607.4 715 48.1
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.7e-171 607.1 704 49.4
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 2.1e-169 600.1 729 51.6
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 2.7e-169 599.7 696 49.9
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 3.6e-169 599.4 703 50.8
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 2.0e-167 593.6 700 49.6
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 1.4e-165 587.4 719 48.7
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.1e-165 585.9 721 48.7
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 7.0e-165 585.1 721 48.7
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 2.0e-164 583.6 710 49.2
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.3e-163 580.9 712 48.5
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 2.9e-163 579.7 690 47.4
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.5e-162 576.6 721 48.1
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 9.4e-162 574.7 695 48.5
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 6.1e-161 572.0 776 45.9
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.4e-160 570.9 705 49.8
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 2.0e-159 567.0 699 47.8
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 4.4e-159 565.8 698 47.4
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 5.7e-159 565.5 707 47.1
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 2.8e-158 563.1 724 45.6
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 3.7e-158 562.8 700 47.3
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 1.7e-155 553.9 699 47.6
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.1e-154 551.2 705 47.4
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 4.2e-154 549.3 695 46.6
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 5.5e-154 548.9 714 46.6
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 1.8e-152 543.9 705 47.0
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 2.0e-151 540.4 693 49.4
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 7.5e-151 538.5 725 46.8
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.7e-150 537.3 703 47.2
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 1.8e-149 533.9 688 45.1
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 9.1e-149 531.6 678 46.3
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 5.9e-148 528.9 727 45.8
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 2.9e-147 526.6 702 45.4
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.2e-146 522.7 615 48.9
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 1.2e-145 521.2 688 46.8
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 8.0e-145 518.5 708 45.8
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 1.4e-144 517.7 707 44.0
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 6.8e-144 515.4 598 48.5
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 2.6e-143 513.5 717 42.8
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 4.4e-143 512.7 604 48.2
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 1.3e-142 511.1 694 44.2
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 4.9e-142 509.2 721 44.1
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 2.4e-141 506.9 690 44.2
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.1e-141 506.5 719 42.7
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 1.0e-139 501.5 706 44.2
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 2.3e-139 500.4 578 48.8
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 2.8e-137 493.4 708 43.5
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 4.7e-137 492.7 685 44.8
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 6.1e-137 492.3 678 45.9
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.4e-136 491.1 718 42.6
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 2.3e-136 490.3 542 50.7
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.2e-135 488.0 672 43.5
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.3e-134 484.6 689 43.4
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 1.7e-134 484.2 703 42.2
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 4.9e-134 482.6 689 43.4
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 2.3e-131 473.8 716 41.8
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 2.3e-131 473.8 716 41.8
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 5.0e-131 472.6 580 46.2
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 6.6e-131 472.2 580 47.1
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 8.6e-131 471.9 720 41.8
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 2.5e-130 470.3 729 42.4
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.2e-129 468.0 632 43.7
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 1.6e-129 467.6 710 41.3
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 4.7e-129 466.1 644 43.9
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.0e-128 464.9 727 41.3
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 3.1e-128 463.4 587 45.8
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 9.8e-127 458.4 589 47.5
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 3.7e-126 456.4 652 41.3
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 6.2e-121 439.1 716 42.3
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 5.2e-120 436.0 618 44.0
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 5.2e-120 436.0 716 42.7
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.4e-119 433.0 470 51.5
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 5.8e-119 432.6 707 42.6
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 1.1e-114 418.3 569 44.5
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 2.1e-113 414.1 604 42.9
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 1.1e-109 401.7 713 38.4
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 6.9e-104 382.5 513 44.6
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 5.4e-101 372.9 662 38.7
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.6e-100 371.3 525 43.4
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 4.6e-100 369.8 589 39.2
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 3.6e-97 360.1 655 37.3
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 4.8e-97 359.8 511 43.1
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 8.1e-97 359.0 605 39.0
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 1.5e-95 354.8 491 45.6
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.6e-95 354.0 460 44.3
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 7.1e-93 345.9 585 39.7
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 1.9e-90 337.8 686 36.0
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 7.4e-90 335.9 606 38.6
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 1.3e-89 335.1 680 36.6
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 5.3e-88 329.7 659 36.1
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 6.9e-88 329.3 365 48.2
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 1.3e-86 325.1 677 35.7
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 1.3e-86 325.1 677 35.7
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 2.2e-86 324.3 505 40.6
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 4.9e-86 323.2 527 40.0
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 1.9e-85 321.2 583 36.5
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 1.9e-85 321.2 563 39.3
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 8.7e-83 312.4 489 40.1
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.8e-80 304.7 355 48.7
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 9.0e-80 302.4 403 43.7
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 6.5e-78 296.2 357 47.9
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.3e-73 282.0 484 37.6
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.9e-69 268.1 586 33.8
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.1e-64 252.3 431 38.3
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 1.1e-58 232.3 251 61.4
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 5.9e-47 193.4 218 47.2
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.3e-46 192.2 468 32.9
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 6.1e-44 183.3 370 32.4
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 1.0e-43 182.6 363 35.0
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 2.3e-43 181.4 246 45.9
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 7.5e-42 176.4 272 42.6
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 9.7e-42 176.0 196 44.9
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.3e-41 175.6 184 54.3
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 2.0e-39 168.3 239 45.2
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 3.5e-39 167.5 231 47.2
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 1.3e-38 165.6 325 37.8
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.9e-38 164.5 334 37.4
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 3.2e-37 161.0 302 40.4
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 4.7e-36 157.1 422 31.0
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.0e-35 154.1 247 39.7
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.8e-32 145.2 229 40.2
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 5.4e-32 143.7 188 43.1
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.6e-31 142.1 376 32.7
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.9e-31 140.2 157 46.5
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 4.2e-29 134.0 325 34.5
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 2.0e-26 125.2 132 48.5
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 2.9e-22 111.3 621 24.6
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.3e-21 107.5 102 52.9
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 2.3e-19 101.7 140 41.4
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 9.8e-18 96.3 174 39.7
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 2.2e-17 95.1 96 52.1
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 4.9e-17 94.0 611 26.8
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.9e-17 94.0 80 57.5
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 8.3e-17 93.2 99 48.5
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 1.1e-16 92.8 141 41.8
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.2e-15 89.4 103 48.5
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 3.5e-15 87.8 226 33.6
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 5.9e-15 87.0 247 30.4
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.9e-13 82.0 99 45.5
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.3e-13 80.9 46 78.3
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.1e-11 76.3 48 64.6
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.0e-11 74.3 145 37.9
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 5.2e-11 73.9 101 47.5
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 2.9e-09 68.2 81 49.4
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 2.9e-09 68.2 139 30.9
PRCOL_00000416 Prasinoderma coloniale HOM05D004086 ORTHO05D004641 2.0e-07 62.0 429 25.9
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.5e-07 61.2 79 49.4
HPP92_015986 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.0e-07 60.5 116 33.6


User provided reference genes

Program Settings