Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0399F.1_g144150 Hydrangea macrophylla HOM05D000147 ORTHO05D036408 5.7e-121 437.6 219 100.0
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 1.6e-17 94.0 83 62.7
QL05p071825 Quercus lobata HOM05D000147 ORTHO05D005950 2.0e-17 93.6 83 61.4
Ciclev10014675m.g Citrus clementina HOM05D000147 ORTHO05D005950 2.7e-17 93.2 83 61.4
CiPaw.10G074700 Carya illinoinensis HOM05D000147 ORTHO05D005950 3.5e-17 92.8 83 61.4
TWI38G0618 Tripterygium wilfordii HOM05D000147 ORTHO05D005950 3.5e-17 92.8 83 60.2
Cfa000159 Carpinus fangiana HOM05D000147 ORTHO05D005950 4.5e-17 92.4 83 59.0
Haze_06859 Corylus avellana HOM05D000147 ORTHO05D005950 4.5e-17 92.4 83 59.0
Hma1.2p1_0298F.1_g117450 Hydrangea macrophylla HOM05D000147 ORTHO05D005950 4.5e-17 92.4 83 62.7
CSS0044927 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D005950 5.9e-17 92.0 83 60.2
AUR62012759 Chenopodium quinoa HOM05D000147 ORTHO05D005950 5.9e-17 92.0 83 61.4
AUR62021899 Chenopodium quinoa HOM05D000147 ORTHO05D005950 5.9e-17 92.0 83 61.4
Manes.16G002800 Manihot esculenta HOM05D000147 ORTHO05D005950 5.9e-17 92.0 83 61.4
Atru.chr10.2285 Acer truncatum HOM05D000147 ORTHO05D005950 7.7e-17 91.7 83 59.0
Actinidia02343 Actinidia chinensis HOM05D000070 ORTHO05D005950 1.0e-16 91.3 83 60.2
Actinidia26885 Actinidia chinensis HOM05D000147 ORTHO05D005950 1.0e-16 91.3 83 60.2
FvH4_3g01380 Fragaria vesca HOM05D000147 ORTHO05D005950 1.3e-16 90.9 83 56.6
Rhsim13G0150000 Rhododendron simsii HOM05D000147 ORTHO05D005950 1.3e-16 90.9 83 60.2
CANSAT56G0204 Cannabis sativa HOM05D000070 ORTHO05D005950 1.7e-16 90.5 83 60.2
Eucgr.E03984 Eucalyptus grandis HOM05D000147 ORTHO05D005950 1.7e-16 90.5 83 59.0
ClCG01G021650 Citrullus lanatus HOM05D000070 ORTHO05D005950 2.2e-16 90.1 83 57.8
Nitab4.5_0005882g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005950 2.9e-16 89.7 83 57.8
vmacro03663 Vaccinium macrocarpon HOM05D000147 ORTHO05D005950 2.9e-16 89.7 83 59.0
Nitab4.5_0000005g0030 Nicotiana tabacum HOM05D000070 ORTHO05D005950 3.8e-16 89.4 83 57.8
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 5.0e-16 89.0 83 59.0
Cc09_g01170 Coffea canephora HOM05D000070 ORTHO05D005950 5.0e-16 89.0 83 60.2
MD10G1327000 Malus domestica HOM05D000147 ORTHO05D005950 6.5e-16 88.6 83 54.2
Nn1g07278 Nelumbo nucifera HOM05D000147 ORTHO05D005950 8.5e-16 88.2 83 59.0
MELO3C007419.2 Cucumis melo HOM05D000147 ORTHO05D005950 1.1e-15 87.8 83 56.6
Potri.004G004000 Populus trichocarpa HOM05D000147 ORTHO05D005950 1.1e-15 87.8 83 56.6
RcHm_v2.0_Chr5g0002011 Rosa chinensis HOM05D000147 ORTHO05D005950 1.1e-15 87.8 83 54.2
Thecc.06G228500 Theobroma cacao HOM05D000147 ORTHO05D005950 1.1e-15 87.8 83 57.8
arahy.Tifrunner.gnm1.ann1.D0808P Arachis hypogaea HOM05D000147 ORTHO05D005950 1.5e-15 87.4 83 56.6
DCAR_024984 Daucus carota HOM05D000147 ORTHO05D005950 1.5e-15 87.4 83 57.8
ATR1149G150 Amborella trichopoda HOM05D000147 ORTHO05D005950 1.9e-15 87.0 83 57.8
arahy.Tifrunner.gnm1.ann1.0743V5 Arachis hypogaea HOM05D000147 ORTHO05D005950 1.9e-15 87.0 83 55.4
Ca_00695_v3 Cicer arietinum L. HOM05D000147 ORTHO05D005950 1.9e-15 87.0 83 55.4
COL.COLO4_31833 Corchorus olitorius HOM05D000070 ORTHO05D005950 1.9e-15 87.0 83 55.4
Lj6g0003893 Lotus japonicus HOM05D000147 ORTHO05D005950 1.9e-15 87.0 83 55.4
Lalb_Chr15g0087801 Lupinus albus HOM05D000147 ORTHO05D005950 1.9e-15 87.0 83 56.6
Oeu002750.1 Olea europaea HOM05D000070 ORTHO05D005950 1.9e-15 87.0 83 55.4
CsaV3_6G048710 Cucumis sativus L. HOM05D000070 ORTHO05D005950 2.5e-15 86.7 83 55.4
ECA236G4610 Erigeron canadensis HOM05D002056 ORTHO05D005950 2.5e-15 86.7 83 55.4
HanXRQChr15g0470791 Helianthus annuus HOM05D000147 ORTHO05D005950 2.5e-15 86.7 83 55.4
Prupe.4G015000 Prunus persica HOM05D000147 ORTHO05D005950 2.5e-15 86.7 83 53.0
PGR042G1740 Punica granatum HOM05D000147 ORTHO05D005950 2.5e-15 86.7 83 57.8
Solyc02g036330.3 Solanum lycopersicum HOM05D000070 ORTHO05D005950 2.5e-15 86.7 83 55.4
Sopen02g011700 Solanum pennellii HOM05D000070 ORTHO05D005950 2.5e-15 86.7 83 55.4
Zm00001eb254090 Zea mays HOM05D000070 ORTHO05D005950 2.5e-15 86.7 83 55.4
MSTRG.7181 Avicennia marina HOM05D000070 ORTHO05D005950 3.2e-15 86.3 83 55.4
Lsat_1_v5_gn_7_14900 Lactuca sativa HOM05D000147 ORTHO05D005950 3.2e-15 86.3 83 55.4
PSO541G0930 Papaver somniferum HOM05D000147 ORTHO05D005950 3.2e-15 86.3 83 57.8
Hund23430 Selenicereus undatus HOM05D000147 ORTHO05D005950 3.2e-15 86.3 83 55.4
Duzib235G0285 Durio zibethinus HOM05D000070 ORTHO05D005950 4.2e-15 85.9 137 44.5
Prupe.4G014800 Prunus persica HOM05D000147 ORTHO05D005950 4.2e-15 85.9 83 53.0
PGSC0003DMG402021461 Solanum tuberosum HOM05D000070 ORTHO05D005950 4.2e-15 85.9 83 55.4
CAN.G23.7 Capsicum annuum HOM05D000070 ORTHO05D005950 5.5e-15 85.5 83 54.2
FvH4_6g05890 Fragaria vesca HOM05D000147 ORTHO05D005950 5.5e-15 85.5 83 53.0
FAN09G4350 Fragaria x ananassa HOM05D000001 ORTHO05D005950 5.5e-15 85.5 83 53.0
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 5.5e-15 85.5 83 53.0
FAN14G4662 Fragaria x ananassa HOM05D000147 ORTHO05D005950 5.5e-15 85.5 83 53.0
Psat1g178560 Pisum sativum HOM05D000147 ORTHO05D005950 5.5e-15 85.5 83 55.4
FAN05G0232 Fragaria x ananassa HOM05D000147 ORTHO05D005950 7.2e-15 85.1 83 53.0
FAN05G2764 Fragaria x ananassa HOM05D000070 ORTHO05D005950 7.2e-15 85.1 83 53.0
MBI02_g15375_MAGBIO Magnolia biondii HOM05D000147 ORTHO05D005950 7.2e-15 85.1 83 57.8
Sed0005764 Sechium edule HOM05D000147 ORTHO05D005950 7.2e-15 85.1 83 54.2
TPR.G13001 Trifolium pratense HOM05D000147 ORTHO05D005950 7.2e-15 85.1 83 54.2
Duzib160G0363 Durio zibethinus HOM05D002056 ORTHO05D005950 1.2e-14 84.3 83 54.2
Lj1C1236T15 Lonicera japonica HOM05D000147 ORTHO05D005950 1.2e-14 84.3 83 55.4
Os02g0740300 Oryza sativa ssp. japonica HOM05D000147 ORTHO05D005950 1.2e-14 84.3 83 53.0
SGA_v2.0_scaffold7G03784 Striga asiatica HOM05D000070 ORTHO05D005950 1.6e-14 84.0 83 55.4
TAR627G0320 Trochodendron aralioides HOM05D000147 ORTHO05D005950 1.6e-14 84.0 83 56.6
TAR627G0645 Trochodendron aralioides HOM05D000147 ORTHO05D005950 1.6e-14 84.0 83 56.6
VMungo0540G1662 Vigna mungo HOM05D000147 ORTHO05D005950 2.1e-14 83.6 83 53.0
Glyma.15G112100 Glycine max HOM05D000147 ORTHO05D005950 2.8e-14 83.2 83 53.0
Medtr2g024440 Medicago truncatula HOM05D000147 ORTHO05D005950 2.8e-14 83.2 83 54.2
PSO675G5655 Papaver somniferum HOM05D000147 ORTHO05D005950 2.8e-14 83.2 83 56.6
unitig_748.g7944 Utricularia gibba HOM05D000070 ORTHO05D005950 2.8e-14 83.2 83 54.2
Gohir.D06G157500 Gossypium hirsutum HOM05D000070 ORTHO05D005950 3.6e-14 82.8 198 36.9
Phvul.006G145500 Phaseolus vulgaris HOM05D000147 ORTHO05D005950 3.6e-14 82.8 83 51.8
Aqoxy1G02947 Aquilegia oxysepala HOM05D000147 ORTHO05D005950 4.7e-14 82.4 83 55.4
AL6G47800 Arabidopsis lyrata HOM05D000070 ORTHO05D005950 4.7e-14 82.4 83 53.0
AT4G04180 Arabidopsis thaliana HOM05D000147 ORTHO05D005950 4.7e-14 82.4 83 53.0
Gohir.A06G151300 Gossypium hirsutum HOM05D000070 ORTHO05D005950 8.0e-14 81.6 198 36.9
Gorai.010G184000 Gossypium raimondii HOM05D000147 ORTHO05D005950 8.0e-14 81.6 198 36.4
Pp3c15_4440 Physcomitrium patens HOM05D000147 ORTHO05D005950 8.0e-14 81.6 83 54.2
CARHR253340 Cardamine hirsuta HOM05D000147 ORTHO05D005950 1.0e-13 81.3 83 51.8
SalBow8G0879 Salvia bowleyana HOM05D000070 ORTHO05D005950 1.0e-13 81.3 78 56.4
Carub.0006s3209 Capsella rubella HOM05D000147 ORTHO05D005950 1.4e-13 80.9 83 51.8
Mapoly0087s0007 Marchantia polymorpha HOM05D000147 ORTHO05D005950 1.4e-13 80.9 83 54.2
FAN21G3947 Fragaria x ananassa HOM05D000147 ORTHO05D005950 3.0e-13 79.7 95 48.4
THA.LOC104813427 Tarenaya hassleriana HOM05D000147 ORTHO05D005950 3.0e-13 79.7 83 53.0
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 4.0e-13 79.3 83 51.8
BcaB01g01796 Brassica carinata HOM05D000147 ORTHO05D005950 4.0e-13 79.3 83 51.8
A09p26440 Brassica napus HOM05D000147 ORTHO05D005950 4.0e-13 79.3 83 51.8
BraA09t38218Z Brassica rapa HOM05D000147 ORTHO05D005950 4.0e-13 79.3 83 51.8
Sp6g04620 Schrenkiella parvula HOM05D000070 ORTHO05D005950 4.0e-13 79.3 83 51.8
BcaC04g21279 Brassica carinata HOM05D000147 ORTHO05D005950 8.8e-13 78.2 83 50.6
C09p33620 Brassica napus HOM05D000147 ORTHO05D005950 8.8e-13 78.2 83 50.6
BolC9t56196H Brassica oleracea HOM05D000147 ORTHO05D005950 8.8e-13 78.2 83 50.6
Migut.M01369 Erythranthe guttata HOM05D000147 ORTHO05D005950 8.8e-13 78.2 83 50.6
Thhalv10028536m.g Eutrema salsugineum HOM05D000070 ORTHO05D005950 1.2e-12 77.8 83 50.6
GSVIVG01004817001 Vitis vinifera HOM05D000070 ORTHO05D005950 2.0e-12 77.0 83 51.8
GSVIVG01004814001 Vitis vinifera HOM05D000147 ORTHO05D005950 7.5e-12 75.1 89 49.4
Sabra04G0002200 Salix brachista HOM05D000147 ORTHO05D005950 9.8e-12 74.7 91 49.5
SMO358G0508 Selaginella moellendorffii HOM05D000147 ORTHO05D005950 9.8e-12 74.7 83 49.4
EL10Ac8g20131 Beta vulgaris HOM05D000147 ORTHO05D005950 3.7e-11 72.8 64 60.9
Sc24g0000260 Simmondsia chinensis HOM05D000147 ORTHO05D005950 3.1e-10 69.7 63 58.7
BcaC04g21269 Brassica carinata HOM05D000147 ORTHO05D005950 7.0e-10 68.6 65 56.9
A01p24870 Brassica napus HOM05D000147 ORTHO05D005950 7.8e-09 65.1 64 51.6
Hma1.2p1_1220F.1_g268080 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 3.8e-08 62.8 79 44.3
BraA01t02401Z Brassica rapa HOM05D000147 ORTHO05D005950 6.6e-08 62.0 64 48.4
QL05p071816 Quercus lobata HOM05D000147 ORTHO05D005950 6.6e-08 62.0 64 51.6
Peaxi162Scf00294g00916 Petunia axillaris HOM05D000070 ORTHO05D005950 5.6e-07 58.9 53 56.6
SEGI_37417 Sequoiadendron giganteum HOM05D000147 ORTHO05D036408 9.5e-07 58.2 48 60.4
Hma1.2p1_0412F.1_g147110 Hydrangea macrophylla HOM05D000147 ORTHO05D005950 1.6e-06 57.4 82 46.3
MCO05G586 Micromonas commoda HOM05D000070 ORTHO05D005950 1.6e-06 57.4 83 41.0
PRCOL_00004038 Prasinoderma coloniale HOM05D000147 ORTHO05D005950 8.0e-06 55.1 87 35.6


User provided reference genes

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