Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 5.4e-62 240.7 115 100.0
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 4.2e-54 214.5 115 88.7
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 2.7e-53 211.8 115 87.0
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 2.7e-53 211.8 115 85.2
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 2.3e-52 208.8 115 86.1
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 2.3e-52 208.8 115 86.1
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 2.3e-52 208.8 115 86.1
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 2.3e-52 208.8 115 84.3
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 3.0e-52 208.4 114 85.1
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 3.9e-52 208.0 114 84.2
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 3.9e-52 208.0 114 84.2
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 5.1e-52 207.6 114 83.3
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 5.1e-52 207.6 115 81.7
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 8.7e-52 206.8 115 84.3
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 8.7e-52 206.8 114 83.3
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.1e-51 206.5 115 83.5
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 1.1e-51 206.5 115 84.3
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.1e-51 206.5 115 84.3
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 1.1e-51 206.5 115 84.3
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 1.5e-51 206.1 115 81.7
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 1.9e-51 205.7 115 85.2
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 1.9e-51 205.7 114 83.3
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 2.5e-51 205.3 114 82.5
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 2.5e-51 205.3 117 84.6
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 3.3e-51 204.9 114 86.0
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.3e-51 204.5 115 83.5
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 4.3e-51 204.5 114 84.2
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 5.6e-51 204.1 115 83.5
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 5.6e-51 204.1 115 82.6
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 1.3e-50 203.0 115 81.7
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 1.6e-50 202.6 115 84.3
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 1.6e-50 202.6 115 80.9
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 2.8e-50 201.8 115 81.7
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.6e-50 201.4 115 82.6
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 6.2e-50 200.7 113 81.4
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 6.2e-50 200.7 114 80.7
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 8.1e-50 200.3 115 80.0
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 8.1e-50 200.3 115 80.0
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 8.1e-50 200.3 114 81.6
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.1e-49 199.9 115 79.1
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.1e-49 199.9 115 79.1
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 1.1e-49 199.9 115 79.1
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 1.1e-49 199.9 115 80.9
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 1.1e-49 199.9 115 80.9
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.1e-49 199.9 115 80.9
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 1.4e-49 199.5 115 78.3
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 1.4e-49 199.5 114 80.7
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.8e-49 199.1 114 81.6
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.8e-49 199.1 115 78.3
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.8e-49 199.1 115 79.1
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 1.8e-49 199.1 114 79.8
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 2.4e-49 198.7 114 79.8
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 3.1e-49 198.4 115 80.9
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 5.3e-49 197.6 115 80.0
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 5.3e-49 197.6 115 79.1
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 5.3e-49 197.6 115 80.0
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 6.9e-49 197.2 117 79.5
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 6.9e-49 197.2 117 79.5
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 9.0e-49 196.8 115 78.3
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 9.0e-49 196.8 115 78.3
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.5e-48 196.1 114 80.7
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 2.6e-48 195.3 126 76.2
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 3.4e-48 194.9 117 81.2
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.4e-48 194.5 114 78.9
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 5.8e-48 194.1 114 78.1
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 5.8e-48 194.1 115 78.3
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 7.6e-48 193.7 112 78.6
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 9.9e-48 193.4 115 78.3
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 2.2e-47 192.2 114 78.9
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 2.9e-47 191.8 115 77.4
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 2.9e-47 191.8 114 79.8
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 3.8e-47 191.4 113 77.9
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 3.8e-47 191.4 114 78.1
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 4.9e-47 191.0 115 77.4
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 4.9e-47 191.0 115 77.4
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 4.9e-47 191.0 115 77.4
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 4.9e-47 191.0 115 77.4
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 4.9e-47 191.0 116 78.4
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 6.4e-47 190.7 113 79.6
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 6.4e-47 190.7 115 78.3
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 8.4e-47 190.3 115 76.5
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 8.4e-47 190.3 115 76.5
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 8.4e-47 190.3 115 76.5
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 1.1e-46 189.9 115 76.5
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 1.4e-46 189.5 115 76.5
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 1.4e-46 189.5 115 76.5
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 1.4e-46 189.5 121 72.7
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 1.9e-46 189.1 115 76.5
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.9e-46 189.1 113 77.9
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 1.9e-46 189.1 115 78.3
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 2.4e-46 188.7 115 75.7
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 2.4e-46 188.7 126 72.2
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 3.2e-46 188.3 115 75.7
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 5.4e-46 187.6 113 77.9
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 5.4e-46 187.6 115 77.4
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 7.1e-46 187.2 115 74.8
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 7.1e-46 187.2 115 74.8
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 1.2e-45 186.4 115 75.7
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 4.6e-45 184.5 114 73.7
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 4.6e-45 184.5 115 70.4
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 1.0e-44 183.3 115 78.3
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 1.7e-44 182.6 165 59.4
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 3.0e-44 181.8 114 71.9
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 3.0e-44 181.8 114 71.9
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 3.0e-44 181.8 116 73.3
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 3.0e-44 181.8 116 73.3
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 3.0e-44 181.8 116 73.3
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 3.0e-44 181.8 116 73.3
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 3.0e-44 181.8 116 73.3
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 3.0e-44 181.8 116 73.3
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 8.7e-44 180.3 115 73.0
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 8.7e-44 180.3 115 73.0
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 1.5e-43 179.5 116 72.4
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 5.6e-43 177.6 115 74.8
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 7.3e-43 177.2 115 73.9
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 9.6e-43 176.8 113 75.2
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.1e-41 173.3 98 84.7
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.1e-41 173.3 98 84.7
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 6.9e-41 170.6 114 71.9
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 2.6e-40 168.7 131 63.4
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 4.5e-40 167.9 117 70.9
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 7.6e-40 167.2 101 78.2
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 7.6e-40 167.2 95 81.1
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 3.8e-39 164.9 97 80.4
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 6.4e-39 164.1 97 79.4
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 7.1e-38 160.6 99 77.8
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 1.0e-36 156.8 100 71.0
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.3e-36 156.4 123 64.2
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 3.9e-36 154.8 97 76.3
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 1.5e-35 152.9 112 61.6
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 2.8e-34 148.7 100 71.0
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 8.1e-34 147.1 113 58.4
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 1.4e-33 146.4 110 57.3
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 1.2e-32 143.3 95 72.6
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 3.8e-31 138.3 115 53.9
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 5.5e-30 134.4 95 69.5
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 6.5e-23 110.9 78 66.7
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.1e-22 110.2 58 89.7
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.9e-22 109.4 63 81.0
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 2.5e-22 109.0 115 49.6
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 5.5e-22 107.8 63 81.0
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.2e-21 106.7 63 77.8
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 2.1e-21 105.9 58 86.2
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 2.1e-21 105.9 58 84.5
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 2.7e-21 105.5 59 83.1
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 1.0e-20 103.6 63 76.2
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 1.8e-20 102.8 156 42.3
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 3.0e-20 102.1 52 88.5
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 5.1e-20 101.3 59 79.7
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 6.7e-20 100.9 53 84.9
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 8.7e-20 100.5 58 79.3
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 1.9e-19 99.4 51 84.3
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 7.4e-19 97.4 50 86.0
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 6.3e-18 94.4 137 38.7
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.1e-17 93.6 53 79.2
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 1.4e-17 93.2 53 81.1
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 1.5e-16 89.7 130 39.2
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 2.3e-12 75.9 52 71.2
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 5.7e-11 71.2 71 52.1
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 3.1e-09 65.5 100 45.0
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 2.6e-08 62.4 35 85.7
Atru.chr9.2072 Acer truncatum HOM05D001461 ORTHO05D005534 3.8e-07 58.5 115 33.9


User provided reference genes

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