Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 2.0e-239 832.0 413 100.0
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 1.6e-132 476.9 412 63.6
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.7e-129 466.8 417 62.4
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 2.5e-125 453.0 383 66.8
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 2.9e-121 439.5 413 59.6
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 6.4e-121 438.3 320 70.6
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 5.9e-119 431.8 322 68.3
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 2.3e-118 429.9 316 69.0
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 2.1e-116 423.3 322 68.3
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 6.2e-116 421.8 322 67.7
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 1.4e-115 420.6 324 68.2
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 1.8e-115 420.2 328 64.6
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 1.2e-114 417.5 320 66.9
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 1.2e-114 417.5 378 61.1
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 1.5e-114 417.2 320 67.2
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 9.8e-114 414.5 388 60.1
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 2.9e-113 412.9 330 63.3
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 2.9e-113 412.9 315 67.3
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 1.9e-112 410.2 322 65.8
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 1.9e-112 410.2 439 52.4
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 3.2e-112 409.5 401 55.6
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 7.0e-112 408.3 318 67.3
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 2.0e-111 406.8 327 63.0
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 2.0e-111 406.8 327 64.5
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 2.7e-111 406.4 319 65.8
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 3.5e-111 406.0 325 64.3
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 4.6e-111 405.6 410 56.6
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 1.0e-110 404.4 351 60.4
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 1.3e-110 404.1 311 65.9
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 1.7e-110 403.7 311 65.0
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 2.3e-110 403.3 395 56.2
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 3.9e-110 402.5 365 59.5
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.9e-109 400.2 393 57.5
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 1.9e-109 400.2 286 72.4
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 4.3e-109 399.1 388 58.5
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 9.5e-109 397.9 413 54.0
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 1.2e-108 397.5 319 64.3
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 1.2e-108 397.5 322 64.6
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 1.6e-108 397.1 320 63.4
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 3.6e-108 396.0 388 58.0
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 6.2e-108 395.2 394 55.8
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.1e-107 394.4 376 59.0
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 1.4e-107 394.0 305 65.9
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 4.0e-107 392.5 304 66.4
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 5.2e-107 392.1 299 67.2
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 1.5e-106 390.6 315 64.8
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 2.0e-106 390.2 304 65.1
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 2.0e-106 390.2 318 64.8
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 2.6e-106 389.8 323 62.8
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 7.5e-106 388.3 322 62.1
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 7.5e-106 388.3 321 62.9
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 9.8e-106 387.9 313 63.3
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 1.7e-105 387.1 313 62.0
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 2.2e-105 386.7 318 63.2
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 3.7e-105 386.0 322 62.4
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 6.4e-105 385.2 319 63.0
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 6.4e-105 385.2 321 62.6
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 8.3e-105 384.8 315 63.5
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 1.4e-104 384.0 296 65.5
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 1.9e-104 383.6 319 63.0
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 3.2e-104 382.9 304 63.8
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 3.2e-104 382.9 395 54.2
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 4.1e-104 382.5 319 63.0
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 5.4e-104 382.1 322 59.9
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.2e-103 380.9 344 59.9
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 1.6e-103 380.6 322 62.4
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 1.6e-103 380.6 299 64.9
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 1.6e-103 380.6 291 67.4
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 4.6e-103 379.0 395 54.2
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 3.0e-102 376.3 318 61.6
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 3.9e-102 375.9 343 58.9
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 5.1e-102 375.6 468 47.9
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 1.5e-101 374.0 318 61.0
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 1.5e-101 374.0 324 61.7
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 3.3e-101 372.9 297 64.0
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 4.3e-101 372.5 299 60.9
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 4.7e-100 369.0 310 60.3
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 6.2e-100 368.6 292 64.0
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 3.1e-99 366.3 300 60.7
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 4.4e-98 362.5 300 64.7
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 5.8e-98 362.1 314 58.0
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 1.3e-97 360.9 299 59.2
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.3e-97 360.9 306 62.4
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 2.9e-97 359.8 298 58.4
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 2.9e-97 359.8 294 60.2
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 2.9e-97 359.8 289 62.6
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 4.9e-97 359.0 294 59.5
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 4.9e-97 359.0 294 59.5
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 4.9e-97 359.0 314 59.2
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 8.4e-97 358.2 289 60.6
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 1.4e-96 357.5 313 55.9
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 7.1e-96 355.1 296 62.2
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 2.1e-95 353.6 298 58.4
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 5.1e-94 349.0 239 72.8
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 5.1e-94 349.0 273 65.9
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 6.6e-94 348.6 263 64.3
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 1.1e-93 347.8 277 61.0
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 4.3e-93 345.9 397 55.4
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 5.6e-93 345.5 273 63.4
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 1.2e-92 344.4 325 57.8
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 2.4e-91 340.1 288 60.4
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 2.0e-90 337.0 259 64.9
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.9e-88 330.5 303 54.5
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 3.2e-88 329.7 288 56.2
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 7.8e-87 325.1 288 55.6
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 1.6e-84 317.4 236 66.9
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 1.4e-83 314.3 273 60.8
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 2.3e-78 297.0 292 55.5
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 5.6e-77 292.4 216 69.0
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 1.3e-73 281.2 265 56.6
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 3.8e-73 279.6 208 68.8
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 2.5e-69 266.9 342 43.9
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 1.6e-63 247.7 288 47.6
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 6.0e-63 245.7 236 54.2
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 2.2e-57 227.3 251 49.4
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 2.2e-52 210.7 286 44.1
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.1e-48 198.4 161 61.5
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 1.4e-48 198.0 239 44.4
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 1.3e-44 184.9 150 62.7
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 2.6e-42 177.2 196 47.4
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 1.7e-41 174.5 145 64.1
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.8e-20 104.0 109 53.2
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 1.1e-19 102.1 89 59.6
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 9.5e-16 89.0 94 54.3
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 2.0e-13 81.3 183 35.0
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.6e-13 80.9 87 52.9
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.6e-13 80.9 87 52.9
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.7e-12 78.2 140 40.0
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 9.2e-11 72.4 187 32.1
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 4.5e-10 70.1 152 30.3
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 7.8e-10 69.3 257 27.2
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 2.3e-09 67.8 244 26.2
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 6.6e-09 66.2 239 25.1
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.1e-08 65.5 247 25.9
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 1.5e-08 65.1 215 26.0
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 1.9e-08 64.7 239 28.0
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 2.5e-08 64.3 152 28.3
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 2.5e-08 64.3 210 30.0
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 3.3e-08 63.9 60 53.3
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 5.6e-08 63.2 215 26.5
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 7.3e-08 62.8 152 27.6
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 1.6e-07 61.6 152 28.3
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 2.1e-07 61.2 218 27.5
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 2.8e-07 60.8 247 24.3
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 2.8e-07 60.8 142 28.9
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 3.6e-07 60.5 252 25.8
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 3.6e-07 60.5 210 26.2
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 3.6e-07 60.5 290 24.5
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 4.7e-07 60.1 216 23.6
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 4.7e-07 60.1 231 26.4
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 1.0e-06 58.9 157 28.0
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.4e-06 58.5 240 25.8
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 1.4e-06 58.5 218 26.6
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 1.8e-06 58.2 180 31.1
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 1.8e-06 58.2 210 26.7
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 3.0e-06 57.4 250 24.4
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 3.0e-06 57.4 210 26.2
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 5.2e-06 56.6 210 25.2
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 6.8e-06 56.2 210 26.2
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 8.9e-06 55.8 152 27.0


User provided reference genes

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