Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0216F.1_g091140 Hydrangea macrophylla HOM05D006267 ORTHO05D007490 0.0e+00 1152.9 593 100.0
Dinv38895 Davidia involucrata HOM05D006267 ORTHO05D007490 6.6e-188 661.4 622 62.1
Dinv37589 Davidia involucrata HOM05D006267 ORTHO05D007490 6.9e-185 651.4 624 61.2
CSS0029775 Camellia sinensis var. sinensis HOM05D006267 ORTHO05D007490 5.7e-147 525.4 624 52.7
Thecc.03G287200 Theobroma cacao HOM05D006267 ORTHO05D007490 2.5e-142 510.0 623 49.9
GSVIVG01019426001 Vitis vinifera HOM05D006267 ORTHO05D007490 2.6e-139 500.0 621 49.8
COL.COLO4_08352 Corchorus olitorius HOM05D006267 ORTHO05D007490 1.1e-134 484.6 621 48.0
Actinidia33723 Actinidia chinensis HOM05D006267 ORTHO05D007490 2.0e-131 473.8 625 50.1
Duzib084G0031 Durio zibethinus HOM05D006267 ORTHO05D007490 9.7e-131 471.5 621 47.5
Lj2A177G41 Lonicera japonica HOM05D006267 ORTHO05D007490 3.7e-130 469.5 602 50.7
QL02p033236 Quercus lobata HOM05D006267 ORTHO05D007490 1.2e-128 464.5 608 48.0
Actinidia27358 Actinidia chinensis HOM05D006267 ORTHO05D007490 8.5e-127 458.4 630 47.5
Cfa012253 Carpinus fangiana HOM05D006267 ORTHO05D007490 4.2e-126 456.1 625 47.2
Atru.chr9.2105 Acer truncatum HOM05D006267 ORTHO05D007490 2.0e-123 447.2 604 45.5
Gohir.D11G022800 Gossypium hirsutum HOM05D006267 ORTHO05D007490 8.3e-114 415.2 571 47.1
MD06G1092500 Malus domestica HOM05D006267 ORTHO05D007490 1.4e-113 414.5 586 44.4
TAR629G1352 Trochodendron aralioides HOM05D006267 ORTHO05D007490 1.4e-113 414.5 617 43.9
Gohir.A11G023100 Gossypium hirsutum HOM05D006267 ORTHO05D007490 1.8e-113 414.1 571 47.1
Manes.01G056900 Manihot esculenta HOM05D006267 ORTHO05D007490 2.4e-113 413.7 616 44.5
Ciclev10019222m.g Citrus clementina HOM05D006267 ORTHO05D007490 5.4e-113 412.5 608 44.9
MD14G1113000 Malus domestica HOM05D006267 ORTHO05D007490 7.0e-113 412.1 584 44.9
Duzib205G1874 Durio zibethinus HOM05D006267 ORTHO05D007490 9.1e-113 411.8 601 45.6
Gorai.007G024600 Gossypium raimondii HOM05D006267 ORTHO05D007490 1.2e-112 411.4 571 46.9
Potri.003G133100 Populus trichocarpa HOM05D006267 ORTHO05D007490 2.9e-111 406.8 586 45.1
Cc08_g15330 Coffea canephora HOM05D006267 ORTHO05D007490 1.1e-110 404.8 530 46.8
Prupe.5G107200 Prunus persica HOM05D006267 ORTHO05D007490 1.9e-110 404.1 570 44.9
Manes.02G016400 Manihot esculenta HOM05D006267 ORTHO05D007490 5.2e-108 396.0 541 46.2
FvH4_5g03290 Fragaria vesca HOM05D006267 ORTHO05D007490 8.9e-108 395.2 609 43.2
FAN18G3550 Fragaria x ananassa HOM05D006267 ORTHO05D007490 2.6e-107 393.7 603 43.9
Potri.001G098500 Populus trichocarpa HOM05D006267 ORTHO05D007490 4.4e-107 392.9 570 45.1
RcHm_v2.0_Chr7g0196491 Rosa chinensis HOM05D006267 ORTHO05D007490 4.9e-106 389.4 622 41.6
vmacro13979 Vaccinium macrocarpon HOM05D006267 ORTHO05D007490 8.3e-106 388.7 621 44.1
FAN04G2714 Fragaria x ananassa HOM05D006267 ORTHO05D007490 4.5e-104 382.9 580 43.8
FAN08G1104 Fragaria x ananassa HOM05D006267 ORTHO05D007490 7.8e-104 382.1 605 42.6
FAN04G3088 Fragaria x ananassa HOM05D006267 ORTHO05D007490 6.6e-103 379.0 604 42.5
Duzib068G0865 Durio zibethinus HOM05D006267 ORTHO05D007490 9.5e-102 375.2 630 41.7
CANSAT21G1484 Cannabis sativa HOM05D006267 ORTHO05D007490 1.2e-101 374.8 589 44.5
Lj4g0011337 Lotus japonicus HOM05D006267 ORTHO05D007490 3.6e-101 373.2 586 41.1
FAN13G1859 Fragaria x ananassa HOM05D006267 ORTHO05D007490 8.0e-101 372.1 604 42.5
ClCG07G007820 Citrullus lanatus HOM05D006267 ORTHO05D007490 1.8e-100 370.9 627 41.5
Glyma.05G212200 Glycine max HOM05D006267 ORTHO05D007490 1.5e-99 367.9 620 40.6
Rhsim07G0086900 Rhododendron simsii HOM05D006267 ORTHO05D007490 7.5e-99 365.5 584 45.0
TAR375G0718 Trochodendron aralioides HOM05D006267 ORTHO05D007490 7.5e-99 365.5 648 40.1
Glyma.08G018700 Glycine max HOM05D006267 ORTHO05D007490 3.7e-98 363.2 619 40.2
CsaV3_4G006140 Cucumis sativus L. HOM05D006267 ORTHO05D007490 8.3e-98 362.1 635 41.6
EL10Ac5g12844 Beta vulgaris HOM05D006267 ORTHO05D007490 1.4e-97 361.3 610 41.1
CiPaw.12G088700 Carya illinoinensis HOM05D006267 ORTHO05D007490 1.9e-97 360.9 504 45.2
Cpa.g.sc201.8 Carica papaya HOM05D006267 ORTHO05D007490 5.4e-97 359.4 613 40.9
FAN13G1356 Fragaria x ananassa HOM05D006267 ORTHO05D007490 7.0e-97 359.0 604 41.9
VMungo0251G1048 Vigna mungo HOM05D006267 ORTHO05D007490 9.2e-97 358.6 620 39.8
AUR62010761 Chenopodium quinoa HOM05D006267 ORTHO05D007490 3.5e-96 356.7 636 41.7
Sabra01G0073800 Salix brachista HOM05D006267 ORTHO05D007490 1.0e-95 355.1 587 42.1
Ca_10954_v3 Cicer arietinum L. HOM05D006267 ORTHO05D007490 1.7e-95 354.4 611 39.4
DCAR_005575 Daucus carota HOM05D006267 ORTHO05D007490 3.0e-95 353.6 596 42.4
Sc01g0009910 Simmondsia chinensis HOM05D006267 ORTHO05D007490 8.0e-93 345.5 593 41.1
Sabra03G0095400 Salix brachista HOM05D006267 ORTHO05D007490 2.3e-92 344.0 574 42.3
TAR374G1011 Trochodendron aralioides HOM05D006267 ORTHO05D007490 3.1e-92 343.6 708 36.0
Medtr8g098995 Medicago truncatula HOM05D006267 ORTHO05D007490 6.8e-92 342.4 576 39.4
Phvul.002G293500 Phaseolus vulgaris HOM05D006267 ORTHO05D007490 2.0e-91 340.9 620 38.7
arahy.Tifrunner.gnm1.ann1.BRCM5A Arachis hypogaea HOM05D006267 ORTHO05D007490 5.8e-91 339.3 572 40.9
arahy.Tifrunner.gnm1.ann1.SWZD22 Arachis hypogaea HOM05D006267 ORTHO05D007490 1.3e-90 338.2 572 40.9
Nn1g01698 Nelumbo nucifera HOM05D006267 ORTHO05D007490 8.3e-90 335.5 651 38.6
Psat7g029320 Pisum sativum HOM05D006267 ORTHO05D007490 1.1e-89 335.1 584 40.6
MSTRG.1836 Avicennia marina HOM05D006267 ORTHO05D007490 1.9e-89 334.3 607 39.4
Lalb_Chr05g0224451 Lupinus albus HOM05D006267 ORTHO05D007490 7.8e-88 328.9 568 40.1
TPR.G12935 Trifolium pratense HOM05D006267 ORTHO05D007490 1.3e-87 328.2 551 38.1
Nitab4.5_0002381g0070 Nicotiana tabacum HOM05D006267 ORTHO05D007490 2.3e-87 327.4 603 40.5
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 3.0e-87 327.0 607 39.4
MELO3C016335.2 Cucumis melo HOM05D006267 ORTHO05D007490 3.9e-87 326.6 624 40.7
Sed0011828 Sechium edule HOM05D006267 ORTHO05D007490 1.9e-86 324.3 623 38.2
Peaxi162Scf00117g01519 Petunia axillaris HOM05D006267 ORTHO05D007490 2.5e-86 323.9 602 40.0
Lalb_Chr09g0333071 Lupinus albus HOM05D006267 ORTHO05D007490 2.1e-85 320.9 611 39.0
ECA246G3109 Erigeron canadensis HOM05D006267 ORTHO05D007490 1.5e-83 314.7 575 41.2
AUR62019762 Chenopodium quinoa HOM05D006267 ORTHO05D007490 3.2e-81 307.0 566 39.4
MSTRG.13864 Avicennia marina HOM05D006267 ORTHO05D007490 9.2e-81 305.4 606 38.6
Aqoxy7G00177 Aquilegia oxysepala HOM05D006267 ORTHO05D007490 1.2e-80 305.1 606 38.6
Nitab4.5_0003366g0020 Nicotiana tabacum HOM05D006267 ORTHO05D007490 2.7e-80 303.9 588 40.0
Hund11430 Selenicereus undatus HOM05D006267 ORTHO05D007490 3.5e-80 303.5 526 41.4
Haze_08744 Corylus avellana HOM05D006267 ORTHO05D007490 1.7e-79 301.2 611 38.3
Migut.E01211 Erythranthe guttata HOM05D006267 ORTHO05D007490 5.1e-79 299.7 587 40.7
SGA_v2.0_scaffold111G31467 Striga asiatica HOM05D006267 ORTHO05D007490 7.3e-78 295.8 598 38.0
Lsat_1_v5_gn_3_11600 Lactuca sativa HOM05D006267 ORTHO05D007490 9.5e-78 295.4 627 38.1
HanXRQChr17g0533871 Helianthus annuus HOM05D006267 ORTHO05D007490 8.1e-77 292.4 583 38.8
VMungo1215G1298 Vigna mungo HOM05D006267 ORTHO05D007490 4.4e-75 286.6 606 34.8
Sed0002932 Sechium edule HOM05D006267 ORTHO05D007490 4.2e-73 280.0 519 40.5
Phvul.002G160500 Phaseolus vulgaris HOM05D006267 ORTHO05D007490 1.2e-72 278.5 601 35.3
TWI81G0535 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 2.1e-72 277.7 418 43.5
Eucgr.E00783 Eucalyptus grandis HOM05D006267 ORTHO05D007490 2.7e-72 277.3 540 37.4
Sopen12g028680 Solanum pennellii HOM05D006267 ORTHO05D007490 4.6e-72 276.6 600 37.8
TWI60G1512 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 1.0e-71 275.4 439 42.6
PGR042G1146 Punica granatum HOM05D006267 ORTHO05D007490 9.6e-70 268.9 594 35.9
Solyc12g056170.2 Solanum lycopersicum HOM05D006267 ORTHO05D007490 1.2e-69 268.5 603 37.0
TWI15G0222 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 1.5e-67 261.5 437 40.5
PGSC0003DMG400004984 Solanum tuberosum HOM05D006267 ORTHO05D007490 2.6e-67 260.8 655 35.0
PSO170G4156 Papaver somniferum HOM05D006267 ORTHO05D007490 1.2e-64 251.9 632 34.2
PSO063G3925 Papaver somniferum HOM05D006267 ORTHO05D007490 2.5e-62 244.2 632 33.7
THA.LOC104817764 Tarenaya hassleriana HOM05D006267 ORTHO05D007490 4.8e-61 240.0 568 34.0
MBI04_g06288_MAGBIO Magnolia biondii HOM05D006267 ORTHO05D007490 3.1e-60 237.3 714 32.6
Carub.0002s0075 Capsella rubella HOM05D006267 ORTHO05D007490 1.5e-59 235.0 482 37.8
AL2G11010 Arabidopsis lyrata HOM05D006267 ORTHO05D007490 2.9e-58 230.7 474 38.6
AT1G64050 Arabidopsis thaliana HOM05D006267 ORTHO05D007490 1.4e-57 228.4 475 37.9
CARHR046900 Cardamine hirsuta HOM05D006267 ORTHO05D007490 1.4e-57 228.4 471 38.2
C09p18210 Brassica napus HOM05D006267 ORTHO05D007490 2.4e-57 227.6 463 38.0
BolC9t54717H Brassica oleracea HOM05D006267 ORTHO05D007490 5.4e-57 226.5 463 38.0
Aa31LG2G1120 Aethionema arabicum HOM05D006267 ORTHO05D007490 1.6e-56 224.9 458 38.9
Sp2g00660 Schrenkiella parvula HOM05D006267 ORTHO05D007490 2.7e-56 224.2 472 38.1
A09p15090 Brassica napus HOM05D006267 ORTHO05D007490 4.6e-56 223.4 464 37.9
BraA09t37153Z Brassica rapa HOM05D006267 ORTHO05D007490 6.0e-56 223.0 456 38.6
BcaC04g22526 Brassica carinata HOM05D006267 ORTHO05D007490 1.0e-55 222.2 454 37.9
Thhalv10023327m.g Eutrema salsugineum HOM05D006267 ORTHO05D007490 5.6e-54 216.5 493 35.7
BcaB07g31428 Brassica carinata HOM05D006267 ORTHO05D007490 3.1e-52 210.7 467 36.8
HanXRQChr06g0166231 Helianthus annuus HOM05D006267 ORTHO05D007490 4.8e-37 160.2 189 49.7
unitig_52.g17233 Utricularia gibba HOM05D006267 ORTHO05D007490 6.9e-36 156.4 428 32.9
CiPaw.11G129100 Carya illinoinensis HOM05D006267 ORTHO05D007490 3.4e-35 154.1 224 45.1
ATR0188G022 Amborella trichopoda HOM05D006267 ORTHO05D007490 1.1e-30 139.0 626 26.4
Zm00001eb237760 Zea mays HOM05D006267 ORTHO05D007490 5.7e-30 136.7 519 29.5
HPP92_003940 Vanilla planifolia HOM05D006267 ORTHO05D007490 2.8e-29 134.4 531 26.6
SHI07081 Sapria himalayana HOM05D006267 ORTHO05D007490 5.3e-28 130.2 292 34.9
CDE03G0464 Ceratophyllum demersum HOM05D000575 ORTHO05D004448 9.4e-17 92.8 443 27.3
HPP92_023960 Vanilla planifolia HOM05D006267 ORTHO05D007490 2.3e-15 88.2 198 32.3
HPP92_023938 Vanilla planifolia HOM05D006267 ORTHO05D007490 3.3e-14 84.3 317 29.0
Hma1.2p1_0377F.1_g139590 Hydrangea macrophylla HOM05D006267 ORTHO05D007490 7.0e-12 76.6 87 56.3
MSTRG.11952 Avicennia marina HOM05D006267 ORTHO05D007490 1.6e-11 75.5 168 36.3
CiPaw.11G129200 Carya illinoinensis HOM05D006267 ORTHO05D007490 5.0e-10 70.5 80 45.0
SEGI_39127 Sequoiadendron giganteum HOM05D006267 ORTHO05D007490 1.8e-07 62.0 242 24.4


User provided reference genes

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