Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0214F.1_g090690 Hydrangea macrophylla HOM05D003777 ORTHO05D012379 2.2e-70 268.9 137 100.0
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 8.3e-17 90.9 103 48.5
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 2.7e-15 85.9 47 91.5
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 1.2e-12 77.0 107 46.7
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 1.5e-10 70.1 104 45.2
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.0e-10 69.7 47 76.6
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.0e-10 69.7 47 76.6
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 7.5e-10 67.8 98 43.9
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 1.3e-09 67.0 47 72.3
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.7e-09 66.6 47 74.5
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.7e-09 66.6 49 63.3
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.7e-09 66.6 49 63.3
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 2.2e-09 66.2 47 66.0
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 2.8e-09 65.9 47 66.0
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 4.8e-09 65.1 49 63.3
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 4.8e-09 65.1 96 43.8
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.1e-08 63.9 47 70.2
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 1.1e-08 63.9 47 66.0
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 1.1e-08 63.9 47 61.7
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 1.1e-08 63.9 47 63.8
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.1e-08 63.9 47 63.8
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.1e-08 63.9 47 63.8
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 1.1e-08 63.9 47 61.7
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 1.4e-08 63.5 49 67.3
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 1.4e-08 63.5 47 63.8
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 1.4e-08 63.5 47 63.8
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 1.8e-08 63.2 47 61.7
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 1.8e-08 63.2 47 66.0
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 2.4e-08 62.8 47 68.1
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 3.1e-08 62.4 47 63.8
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 3.1e-08 62.4 47 61.7
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 4.1e-08 62.0 47 59.6
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 4.1e-08 62.0 47 61.7
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 5.4e-08 61.6 47 61.7
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 5.4e-08 61.6 47 59.6
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 5.4e-08 61.6 47 63.8
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 7.0e-08 61.2 47 57.4
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 9.1e-08 60.8 49 55.1
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 9.1e-08 60.8 47 59.6
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 9.1e-08 60.8 111 37.8
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 1.2e-07 60.5 48 58.3
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 1.2e-07 60.5 47 57.4
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.6e-07 60.1 47 59.6
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 1.6e-07 60.1 47 59.6
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 1.6e-07 60.1 47 59.6
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 1.6e-07 60.1 47 61.7
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.6e-07 60.1 47 57.4
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 2.0e-07 59.7 47 57.4
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 2.0e-07 59.7 47 57.4
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 2.0e-07 59.7 47 57.4
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 2.0e-07 59.7 51 51.0
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.7e-07 59.3 50 58.0
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.5e-07 58.9 48 64.6
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 3.5e-07 58.9 47 57.4
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 5.9e-07 58.2 46 58.7
MBI11_g46771_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D012379 5.9e-07 58.2 48 58.3
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 5.9e-07 58.2 100 37.0
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 5.9e-07 58.2 47 57.4
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 7.7e-07 57.8 44 63.6
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 7.7e-07 57.8 47 57.4
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 7.7e-07 57.8 48 64.6
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 7.7e-07 57.8 47 55.3
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 7.7e-07 57.8 49 63.3
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 1.0e-06 57.4 48 54.2
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.0e-06 57.4 47 57.4
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.0e-06 57.4 100 37.0
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.0e-06 57.4 100 37.0
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 1.0e-06 57.4 48 56.2
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 1.3e-06 57.0 47 57.4
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 1.3e-06 57.0 47 53.2
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 1.3e-06 57.0 47 55.3
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.3e-06 57.0 47 57.4
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.3e-06 57.0 47 57.4
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 1.7e-06 56.6 62 43.5
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 1.7e-06 56.6 48 60.4
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 2.3e-06 56.2 47 57.4
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 2.3e-06 56.2 130 35.4
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 2.3e-06 56.2 130 35.4
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 2.3e-06 56.2 47 57.4
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 2.9e-06 55.8 48 60.4
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.9e-06 55.8 46 58.7
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.9e-06 55.8 46 58.7
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 2.9e-06 55.8 47 61.7
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 2.9e-06 55.8 47 61.7
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 3.8e-06 55.5 47 59.6
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 3.8e-06 55.5 47 57.4
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 3.8e-06 55.5 47 53.2
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 5.0e-06 55.1 113 35.4
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 5.0e-06 55.1 46 56.5
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 6.6e-06 54.7 103 37.9
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 6.6e-06 54.7 47 53.2
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 6.6e-06 54.7 47 55.3
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 8.6e-06 54.3 46 54.3


User provided reference genes

Program Settings