Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 0.0e+00 1203.3 594 100.0
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 1.0e-225 786.9 553 72.0
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.3e-199 700.3 567 64.6
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.3e-199 700.3 567 64.6
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 1.2e-189 667.2 571 62.3
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 2.3e-188 662.9 570 61.2
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 7.6e-184 647.9 620 57.9
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 3.8e-183 645.6 536 63.1
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 7.1e-182 641.3 553 61.1
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 2.7e-181 639.4 552 60.5
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 3.5e-181 639.0 550 61.3
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 3.5e-181 639.0 552 61.8
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 1.0e-180 637.5 556 59.4
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.0e-180 637.5 553 60.6
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.0e-180 637.5 553 60.6
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 3.9e-180 635.6 555 60.2
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 2.5e-179 632.9 552 60.9
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 3.3e-179 632.5 555 60.2
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 6.2e-178 628.2 559 60.1
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 1.4e-177 627.1 553 60.8
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.8e-177 626.7 553 60.0
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 2.4e-177 626.3 554 59.9
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 6.4e-175 618.2 569 59.2
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 8.4e-175 617.8 554 59.0
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 1.9e-174 616.7 554 59.6
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 1.9e-174 616.7 554 59.9
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 1.6e-173 613.6 552 58.2
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 2.3e-172 609.8 554 58.5
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 1.3e-170 604.0 552 57.8
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 2.1e-170 603.2 552 57.6
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 8.1e-170 601.3 554 57.8
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 1.1e-169 600.9 555 57.3
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 1.1e-169 600.9 554 57.9
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 1.3e-167 594.0 562 56.2
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 4.9e-167 592.0 552 56.0
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.9e-166 590.1 559 58.0
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.9e-166 590.1 560 57.5
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.2e-165 587.4 601 55.4
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 3.5e-165 585.9 554 56.1
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 3.5e-165 585.9 557 55.8
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 7.9e-165 584.7 554 55.8
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 1.8e-164 583.6 558 57.3
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 1.9e-163 580.1 551 55.9
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 5.7e-163 578.6 554 56.1
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 2.4e-161 573.2 554 55.6
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 4.1e-161 572.4 549 55.4
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 1.5e-160 570.5 554 56.5
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 2.6e-160 569.7 557 55.7
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 1.4e-158 563.9 563 56.1
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 2.1e-157 560.1 551 53.5
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 3.6e-157 559.3 541 55.3
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 1.3e-154 550.8 555 53.7
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.6e-154 550.4 595 54.3
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 8.2e-154 548.1 566 53.5
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 4.1e-153 545.8 565 53.3
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 5.3e-153 545.4 570 50.9
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 2.6e-152 543.1 554 53.2
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 4.5e-152 542.3 551 52.3
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 4.5e-152 542.3 562 55.0
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 1.7e-151 540.4 554 52.2
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 8.5e-151 538.1 562 54.4
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 9.4e-150 534.6 478 57.3
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 2.7e-149 533.1 554 51.3
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 6.7e-148 528.5 554 53.2
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 1.1e-147 527.7 573 51.5
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 2.0e-147 526.9 552 51.8
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 9.7e-147 524.6 546 53.1
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 3.7e-146 522.7 554 51.3
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 6.9e-145 518.5 546 50.9
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 9.1e-145 518.1 580 50.9
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 4.5e-144 515.8 551 49.5
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 1.0e-143 514.6 552 51.4
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 6.5e-143 511.9 550 50.4
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 1.1e-142 511.1 551 49.7
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 3.3e-139 499.6 554 48.7
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 8.2e-138 495.0 546 49.1
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 1.4e-137 494.2 546 48.5
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 3.5e-136 489.6 569 47.5
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 1.3e-135 487.6 556 48.2
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 2.5e-134 483.4 550 48.2
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 5.5e-134 482.3 552 48.2
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 7.2e-134 481.9 553 50.5
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 2.7e-133 479.9 555 47.4
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 6.1e-133 478.8 552 47.1
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 1.0e-132 478.0 550 47.3
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 1.4e-132 477.6 548 46.7
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 1.4e-132 477.6 548 46.7
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.3e-132 476.9 480 55.6
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 2.0e-131 473.8 547 47.7
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 3.3e-131 473.0 547 47.7
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 9.7e-131 471.5 594 48.0
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 1.3e-130 471.1 550 47.6
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 1.3e-130 471.1 546 47.1
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 4.8e-130 469.2 545 47.5
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 6.3e-130 468.8 550 47.5
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 1.4e-129 467.6 546 47.1
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 4.1e-129 466.1 533 49.2
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.1e-129 464.9 536 48.5
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 1.6e-128 464.2 570 46.7
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 2.0e-128 463.8 545 47.0
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 1.0e-127 461.5 546 46.5
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 1.7e-122 444.1 557 45.6
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 4.2e-118 429.5 554 43.0
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 2.1e-117 427.2 596 42.4
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.4e-115 419.5 536 45.5
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 3.1e-113 413.3 558 42.8
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 9.2e-113 411.8 549 43.0
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 4.5e-112 409.5 556 41.7
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 1.6e-109 401.0 553 42.5
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 1.5e-107 394.4 571 42.0
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 5.7e-107 392.5 553 44.1
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 3.2e-105 386.7 569 41.3
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 7.0e-105 385.6 528 42.2
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 1.7e-103 380.9 415 49.4
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 6.8e-100 369.0 556 40.1
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 6.8e-100 369.0 555 40.4
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.6e-93 347.8 556 39.2
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.1e-93 345.5 547 39.5
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 1.8e-92 344.4 471 42.7
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.8e-91 339.3 547 39.3
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 4.6e-88 329.7 570 36.8
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 2.5e-86 323.9 589 37.5
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.1e-84 317.0 514 39.5
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.8e-84 315.8 514 39.5
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 4.6e-72 276.6 543 33.5
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.9e-64 249.2 509 34.8
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.9e-64 249.2 509 34.8
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.9e-58 230.7 411 37.0
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 1.6e-56 224.9 546 30.2
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 8.7e-55 219.2 396 35.9
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 1.9e-49 201.4 336 40.5
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 1.9e-49 201.4 283 44.2
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 4.8e-45 186.8 167 57.5
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 6.3e-45 186.4 141 64.5
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 3.7e-37 160.6 494 28.1
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 4.1e-36 157.1 546 27.1
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.6e-32 145.2 506 27.9
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 6.1e-32 143.3 559 25.8
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.4e-31 142.1 425 28.5
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 5.3e-28 130.2 476 26.5
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.5e-26 122.9 308 33.4
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 2.1e-24 118.2 466 21.7
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 1.3e-21 109.0 536 23.7
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 1.1e-20 105.9 98 53.1
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 1.9e-17 95.1 59 79.7
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 1.4e-15 89.0 105 42.9
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 6.3e-13 80.1 55 61.8
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 1.8e-12 78.6 87 42.5
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.4e-12 78.2 408 22.8
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 2.4e-12 78.2 59 62.7
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 2.7e-11 74.7 178 32.0
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.9e-11 73.6 57 59.6
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 2.2e-10 71.6 88 40.9
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 1.9e-09 68.6 147 29.3
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 7.2e-09 66.6 61 44.3


User provided reference genes

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