Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0212F.1_g090010 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 1.1e-104 383.3 193 100.0
CSS0030498 Camellia sinensis var. sinensis HOM05D006641 ORTHO05D007573 2.8e-55 219.2 197 58.9
Hma1.2p1_0486F.1_g163110 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 4.2e-51 205.3 200 59.0
Hma1.2p1_0486F.1_g163121 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 4.2e-51 205.3 200 59.0
QL12p020167 Quercus lobata HOM05D006641 ORTHO05D007573 3.6e-50 202.2 196 58.2
Atru.chr5.1033 Acer truncatum HOM05D006641 ORTHO05D007573 8.0e-50 201.1 202 57.9
Dinv33109 Davidia involucrata HOM05D006641 ORTHO05D007573 1.4e-49 200.3 191 61.3
Oeu008464.1 Olea europaea HOM05D006641 ORTHO05D007573 2.3e-49 199.5 200 55.5
vmacro02409 Vaccinium macrocarpon HOM05D006641 ORTHO05D007573 2.0e-48 196.4 202 53.0
Thecc.01G311800 Theobroma cacao HOM05D006641 ORTHO05D007573 7.5e-48 194.5 203 53.2
Medtr1g087230 Medicago truncatula HOM05D006641 ORTHO05D007573 3.7e-47 192.2 193 52.3
Nitab4.5_0001301g0080 Nicotiana tabacum HOM05D006641 ORTHO05D007573 1.8e-46 189.9 211 51.2
Rhsim13G0005400 Rhododendron simsii HOM05D006641 ORTHO05D007573 1.8e-46 189.9 201 53.7
Aqoxy2G01829 Aquilegia oxysepala HOM05D006641 ORTHO05D007573 4.1e-46 188.7 197 52.8
TPR.G19761 Trifolium pratense HOM05D006641 ORTHO05D007573 5.3e-46 188.3 195 52.8
Duzib138G1609 Durio zibethinus HOM05D006641 ORTHO05D007573 1.6e-45 186.8 203 53.2
Duzib211G0496 Durio zibethinus HOM05D006641 ORTHO05D007573 1.6e-45 186.8 203 51.7
DCAR_002902 Daucus carota HOM05D006641 ORTHO05D007573 5.9e-45 184.9 198 48.5
VMungo0007G0001 Vigna mungo HOM05D006641 ORTHO05D007573 5.9e-45 184.9 193 52.8
Duzib133G1491 Durio zibethinus HOM05D006641 ORTHO05D007573 7.7e-45 184.5 203 52.7
Cfa005814 Carpinus fangiana HOM05D006641 ORTHO05D007573 1.7e-44 183.3 199 53.8
CiPaw.07G116300 Carya illinoinensis HOM05D006641 ORTHO05D007573 3.8e-44 182.2 204 51.0
Glyma.10G013800 Glycine max HOM05D006641 ORTHO05D007573 3.8e-44 182.2 200 53.0
Potri.002G196900 Populus trichocarpa HOM05D006641 ORTHO05D007573 3.8e-44 182.2 203 55.2
Manes.05G002600 Manihot esculenta HOM05D006641 ORTHO05D007573 5.0e-44 181.8 200 53.5
Potri.014G122100 Populus trichocarpa HOM05D006641 ORTHO05D007573 5.0e-44 181.8 201 54.7
TAR362G0542 Trochodendron aralioides HOM05D006641 ORTHO05D007573 1.5e-43 180.3 197 50.3
Ca_10290_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 1.9e-43 179.9 197 51.3
Ca_30054_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 1.9e-43 179.9 197 51.3
Lj5g0026629 Lotus japonicus HOM05D006641 ORTHO05D007573 2.5e-43 179.5 202 53.0
Nitab4.5_0008979g0010 Nicotiana tabacum HOM05D006641 ORTHO05D007573 3.2e-43 179.1 203 50.2
PGSC0003DMG400009037 Solanum tuberosum HOM05D006641 ORTHO05D007573 3.2e-43 179.1 206 49.5
Sabra02G0160400 Salix brachista HOM05D006641 ORTHO05D007573 4.2e-43 178.7 200 53.5
Peaxi162Scf00691g00003 Petunia axillaris HOM05D006641 ORTHO05D007573 7.2e-43 177.9 203 51.7
SalBow3G3599 Salvia bowleyana HOM05D006641 ORTHO05D007573 7.2e-43 177.9 201 54.2
Solyc01g079550.2 Solanum lycopersicum HOM05D006641 ORTHO05D007573 9.4e-43 177.6 205 50.2
Prupe.8G270900 Prunus persica HOM05D006641 ORTHO05D007573 1.2e-42 177.2 199 51.3
Sopen01g031320 Solanum pennellii HOM05D006641 ORTHO05D007573 2.1e-42 176.4 205 49.8
Phvul.007G214900 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 2.7e-42 176.0 192 51.0
Nn3g21666 Nelumbo nucifera HOM05D006641 ORTHO05D007573 4.7e-42 175.3 202 50.5
RcHm_v2.0_Chr7g0241631 Rosa chinensis HOM05D006641 ORTHO05D007573 1.0e-41 174.1 199 50.8
Sabra14G0090500 Salix brachista HOM05D006641 ORTHO05D007573 1.0e-41 174.1 198 53.5
Gohir.A07G127900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.4e-41 173.7 205 50.2
Medtr7g109410 Medicago truncatula HOM05D006641 ORTHO05D007573 1.4e-41 173.7 193 49.2
TWI36G0114 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 1.4e-41 173.7 203 52.2
Lalb_Chr02g0146781 Lupinus albus HOM05D006641 ORTHO05D007573 2.3e-41 172.9 193 50.8
DCAR_005769 Daucus carota HOM05D006641 ORTHO05D007573 3.0e-41 172.6 200 46.5
Psat6g162160 Pisum sativum HOM05D006641 ORTHO05D007573 4.0e-41 172.2 196 49.5
Lalb_Chr15g0078301 Lupinus albus HOM05D006641 ORTHO05D007573 5.2e-41 171.8 198 49.5
Gorai.001G143700 Gossypium raimondii HOM05D006641 ORTHO05D007573 6.8e-41 171.4 205 49.8
PSO210G6531 Papaver somniferum HOM05D006641 ORTHO05D007573 6.8e-41 171.4 201 49.8
Gohir.D07G132300 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.2e-40 170.6 205 49.8
Cc01_g21330 Coffea canephora HOM05D006641 ORTHO05D007573 2.0e-40 169.9 232 48.3
FvH4_5g39350 Fragaria vesca HOM05D006641 ORTHO05D007573 2.0e-40 169.9 199 50.3
Ciclev10021856m.g Citrus clementina HOM05D006641 ORTHO05D007573 2.6e-40 169.5 191 53.4
PGR119G1902 Punica granatum HOM05D006641 ORTHO05D007573 2.6e-40 169.5 212 46.7
PSO761G0656 Papaver somniferum HOM05D006641 ORTHO05D007573 3.4e-40 169.1 201 50.2
Psat3g020560 Pisum sativum HOM05D006641 ORTHO05D007573 5.7e-40 168.3 193 47.7
FAN13G0974 Fragaria x ananassa HOM05D001136 ORTHO05D007573 7.5e-40 167.9 199 49.7
MD03G1296400 Malus domestica HOM05D006641 ORTHO05D007573 7.5e-40 167.9 203 52.7
Glyma.03G218800 Glycine max HOM05D006641 ORTHO05D007573 1.7e-39 166.8 197 49.2
FAN08G0230 Fragaria x ananassa HOM05D001136 ORTHO05D007573 2.2e-39 166.4 199 49.2
FAN08G2922 Fragaria x ananassa HOM05D006641 ORTHO05D007573 2.2e-39 166.4 199 49.2
FAN18G1732 Fragaria x ananassa HOM05D001136 ORTHO05D007573 2.2e-39 166.4 199 49.2
Glyma.19G215600 Glycine max HOM05D006641 ORTHO05D007573 2.2e-39 166.4 196 49.5
Gohir.A08G119133 Gossypium hirsutum HOM05D006641 ORTHO05D007573 2.8e-39 166.0 206 47.1
Sed0015554 Sechium edule HOM05D006641 ORTHO05D007573 2.8e-39 166.0 199 48.2
FAN04G2480 Fragaria x ananassa HOM05D001136 ORTHO05D007573 4.9e-39 165.2 199 48.2
Gohir.D08G139900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 4.9e-39 165.2 208 47.6
Gorai.004G144000 Gossypium raimondii HOM05D006641 ORTHO05D007573 4.9e-39 165.2 206 47.1
MD11G1315800 Malus domestica HOM05D006641 ORTHO05D007573 6.3e-39 164.9 203 50.7
arahy.Tifrunner.gnm1.ann1.DB9XMS Arachis hypogaea HOM05D006641 ORTHO05D007573 1.1e-38 164.1 197 48.2
ClCG09G005170 Citrullus lanatus HOM05D006641 ORTHO05D007573 1.1e-38 164.1 199 47.7
Glyma.02G013200 Glycine max HOM05D006641 ORTHO05D007573 1.1e-38 164.1 192 47.4
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 1.4e-38 163.7 181 49.7
Manes.01G226800 Manihot esculenta HOM05D006641 ORTHO05D007573 1.4e-38 163.7 192 48.4
COL.COLO4_23247 Corchorus olitorius HOM05D006641 ORTHO05D007573 2.4e-38 162.9 207 47.3
Migut.D00088 Erythranthe guttata HOM05D006641 ORTHO05D007573 5.4e-38 161.8 208 48.1
Haze_05028 Corylus avellana HOM05D006641 ORTHO05D007573 2.0e-37 159.8 179 52.5
Eucgr.H01054 Eucalyptus grandis HOM05D006641 ORTHO05D007573 2.0e-37 159.8 197 48.7
SGA_v2.0_scaffold376G50279 Striga asiatica HOM05D006641 ORTHO05D007573 2.0e-37 159.8 195 49.2
CANSAT25G1473 Cannabis sativa HOM05D006641 ORTHO05D007573 2.7e-37 159.5 209 48.8
CsaV3_7G029900 Cucumis sativus L. HOM05D006641 ORTHO05D007573 3.5e-37 159.1 201 47.8
Lj1g0024392 Lotus japonicus HOM05D006641 ORTHO05D007573 3.5e-37 159.1 194 48.5
MELO3C015931.2 Cucumis melo HOM05D006641 ORTHO05D007573 4.5e-37 158.7 197 48.2
Phvul.001G212200 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 4.5e-37 158.7 192 47.4
AUR62024668 Chenopodium quinoa HOM05D006641 ORTHO05D007573 7.7e-37 157.9 200 47.0
EL10As5g23515 Beta vulgaris HOM05D006641 ORTHO05D007573 1.7e-36 156.8 199 47.7
VMungo1383G0778 Vigna mungo HOM05D006641 ORTHO05D007573 3.8e-36 155.6 194 47.4
Ah.11g049320 Amaranthus hybridus HOM05D000446 ORTHO05D000321 1.1e-35 154.1 193 45.6
Lsat_1_v5_gn_9_2880 Lactuca sativa HOM05D006641 ORTHO05D007573 1.5e-35 153.7 202 45.5
TAR589G0002 Trochodendron aralioides HOM05D006641 ORTHO05D007573 2.8e-34 149.4 160 53.1
TAR633G2793 Trochodendron aralioides HOM05D006641 ORTHO05D007573 2.8e-34 149.4 160 53.1
AUR62011824 Chenopodium quinoa HOM05D006641 ORTHO05D007573 3.6e-34 149.1 200 44.5
Actinidia27614 Actinidia chinensis HOM05D006641 ORTHO05D007573 8.0e-34 147.9 187 48.1
Cpa.g.sc18.26 Carica papaya HOM05D006641 ORTHO05D007573 8.0e-34 147.9 208 45.7
HanXRQChr15g0465011 Helianthus annuus HOM05D006641 ORTHO05D007573 8.0e-34 147.9 193 46.1
ECA247G2557 Erigeron canadensis HOM05D006641 ORTHO05D007573 1.0e-33 147.5 190 47.4
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 4.0e-33 145.6 184 43.5
Gohir.A12G125900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 8.9e-33 144.4 205 45.9
Gohir.D12G129400 Gossypium hirsutum HOM05D006641 ORTHO05D007573 3.7e-31 139.0 198 42.9
Gorai.008G140500 Gossypium raimondii HOM05D006641 ORTHO05D007573 3.7e-31 139.0 198 42.9
PSO170G1046 Papaver somniferum HOM05D006641 ORTHO05D007573 9.2e-30 134.4 207 42.5
PSO357G0224 Papaver somniferum HOM05D006641 ORTHO05D007573 7.8e-29 131.3 207 42.0
CiPaw.08G090800 Carya illinoinensis HOM05D006641 ORTHO05D007573 1.2e-26 124.0 203 40.9
ATR0706G193 Amborella trichopoda HOM05D006641 ORTHO05D007573 7.5e-24 114.8 201 39.8
TPR.G4797 Trifolium pratense HOM05D006641 ORTHO05D007573 1.7e-23 113.6 142 44.4
Eucgr.K03540 Eucalyptus grandis HOM05D006641 ORTHO05D007573 1.1e-22 110.9 218 37.2
THA.LOC104801302 Tarenaya hassleriana HOM05D006641 ORTHO05D007573 2.0e-21 106.7 209 38.3
arahy.Tifrunner.gnm1.ann1.Q9I7GX Arachis hypogaea HOM05D006641 ORTHO05D007573 4.6e-21 105.5 168 38.7
CARHR249590 Cardamine hirsuta HOM05D006641 ORTHO05D007573 2.5e-19 99.8 205 37.1
Aa31LG5G1730 Aethionema arabicum HOM05D006641 ORTHO05D007573 5.6e-19 98.6 215 36.3
AT4G02090 Arabidopsis thaliana HOM05D006641 ORTHO05D007573 4.7e-18 95.5 206 35.0
BcaC04g24036 Brassica carinata HOM05D001136 ORTHO05D007573 1.4e-17 94.0 214 33.2
C09p01650 Brassica napus HOM05D001136 ORTHO05D007573 1.4e-17 94.0 214 33.2
BolC9t53098H Brassica oleracea HOM05D001136 ORTHO05D007573 1.4e-17 94.0 214 33.2
Carub.0006s3513 Capsella rubella HOM05D006641 ORTHO05D007573 2.0e-16 90.1 220 33.2
BcaB01g02078 Brassica carinata HOM05D006641 ORTHO05D007573 3.4e-16 89.4 208 32.2
A09p01550 Brassica napus HOM05D006641 ORTHO05D007573 4.4e-16 89.0 209 32.5
AL6G51140 Arabidopsis lyrata HOM05D006641 ORTHO05D007573 5.8e-16 88.6 216 32.9
BraA09t35814Z Brassica rapa HOM05D001136 ORTHO05D007573 5.8e-16 88.6 217 33.2
Sp6g01980 Schrenkiella parvula HOM05D006641 ORTHO05D007573 1.3e-15 87.4 214 32.2
TWI75G0789 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 2.9e-15 86.3 120 48.3
Zm00001eb396340 Zea mays HOM05D006641 ORTHO05D007573 1.9e-14 83.6 212 30.2
Thhalv10029320m.g Eutrema salsugineum HOM05D006641 ORTHO05D007573 2.4e-14 83.2 215 33.0
CDE05G1007 Ceratophyllum demersum HOM05D006641 ORTHO05D007573 2.7e-13 79.7 107 40.2
Actinidia21410 Actinidia chinensis HOM05D000446 ORTHO05D000321 7.8e-13 78.2 95 47.4
Os03g0305200 Oryza sativa ssp. japonica HOM05D006641 ORTHO05D007573 8.6e-12 74.7 217 29.0
SEGI_14616 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 1.1e-11 74.3 187 31.0
HPP92_018375 Vanilla planifolia HOM05D006641 ORTHO05D007573 1.9e-11 73.6 194 33.5
Cpa.g.sc170.5 Carica papaya HOM05D001935 ORTHO05D001700 8.1e-10 68.2 187 32.1
SEGI_39105 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 8.1e-10 68.2 186 30.1
Gorai.001G084400 Gossypium raimondii HOM05D001935 ORTHO05D001700 5.2e-09 65.5 187 30.5
Gohir.A07G075100 Gossypium hirsutum HOM05D001935 ORTHO05D001700 8.9e-09 64.7 187 30.5
COL.COLO4_03618 Corchorus olitorius HOM05D001935 ORTHO05D001700 1.2e-08 64.3 188 31.4
Gohir.D07G079675 Gossypium hirsutum HOM05D001935 ORTHO05D001700 1.2e-08 64.3 191 29.8
MBI10_g37756_MAGBIO Magnolia biondii HOM05D001935 ORTHO05D001700 1.2e-08 64.3 188 30.9
Thecc.04G125800 Theobroma cacao HOM05D001935 ORTHO05D001700 2.6e-08 63.2 192 31.8
Zm00001eb014520 Zea mays HOM05D006641 ORTHO05D007573 7.6e-08 61.6 208 28.4
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 9.9e-08 61.2 192 29.7
TAR622G0550 Trochodendron aralioides HOM05D002829 ORTHO05D003124 1.3e-07 60.8 192 26.0
ATR0326G068 Amborella trichopoda HOM05D001935 ORTHO05D001700 1.7e-07 60.5 111 35.1
TWI31G0738 Tripterygium wilfordii HOM05D001935 ORTHO05D001700 1.7e-07 60.5 187 28.3
CDE06G0938 Ceratophyllum demersum HOM05D001935 ORTHO05D001700 2.2e-07 60.1 188 29.3
Nn3g18024 Nelumbo nucifera HOM05D001935 ORTHO05D001700 2.9e-07 59.7 187 29.9
CiPaw.03G066100 Carya illinoinensis HOM05D001935 ORTHO05D001700 3.7e-07 59.3 191 30.9
FAN08G3433 Fragaria x ananassa HOM05D007478 ORTHO05D001700 4.9e-07 58.9 169 30.2
TWI79G0540 Tripterygium wilfordii HOM05D001935 ORTHO05D001700 4.9e-07 58.9 190 28.4
unitig_24.g30589 Utricularia gibba HOM05D001935 ORTHO05D001700 4.9e-07 58.9 181 29.8
unitig_22.g5581 Utricularia gibba HOM05D001935 ORTHO05D001700 6.4e-07 58.5 181 29.8
SEGI_04656 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 8.4e-07 58.2 188 29.3
CANSAT78G1422 Cannabis sativa HOM05D001935 ORTHO05D001700 1.1e-06 57.8 195 28.7
Manes.14G171900 Manihot esculenta HOM05D007478 ORTHO05D001700 1.1e-06 57.8 166 27.7
TAR622G0514 Trochodendron aralioides HOM05D001935 ORTHO05D001700 1.1e-06 57.8 199 30.2
Haze_11047 Corylus avellana HOM05D001935 ORTHO05D001700 1.4e-06 57.4 187 30.5
Duzib264G0406 Durio zibethinus HOM05D002829 ORTHO05D003124 1.4e-06 57.4 210 27.1
Lj2g0026095 Lotus japonicus HOM05D001935 ORTHO05D001700 1.4e-06 57.4 188 29.8
QL02p049399 Quercus lobata HOM05D001935 ORTHO05D001700 1.4e-06 57.4 187 28.3
Aqoxy3G00069 Aquilegia oxysepala HOM05D001935 ORTHO05D001700 1.9e-06 57.0 199 29.1
Prupe.3G150600 Prunus persica HOM05D001935 ORTHO05D001700 1.9e-06 57.0 195 29.7
PGR042G0803 Punica granatum HOM05D001935 ORTHO05D001700 1.9e-06 57.0 188 26.6
SEGI_32719 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 1.9e-06 57.0 174 29.3
Lj6P749T50 Lonicera japonica HOM05D001935 ORTHO05D001700 2.4e-06 56.6 187 26.7
Duzib133G0729 Durio zibethinus HOM05D001935 ORTHO05D001700 3.2e-06 56.2 188 28.7
Duzib147G1098 Durio zibethinus HOM05D002829 ORTHO05D003124 3.2e-06 56.2 189 25.4
QL10p030590 Quercus lobata HOM05D007478 ORTHO05D001700 3.2e-06 56.2 166 30.1
TAR629G0885 Trochodendron aralioides HOM05D007478 ORTHO05D001700 4.1e-06 55.8 167 31.1
Duzib211G0529 Durio zibethinus HOM05D001935 ORTHO05D001700 7.1e-06 55.1 173 31.8
CiPaw.15G144400 Carya illinoinensis HOM05D007478 ORTHO05D001700 9.2e-06 54.7 166 29.5
Dinv14860 Davidia involucrata HOM05D001935 ORTHO05D001700 9.2e-06 54.7 179 31.3
Eucgr.F02810 Eucalyptus grandis HOM05D001935 ORTHO05D001700 9.2e-06 54.7 187 27.8
Gohir.A05G317100 Gossypium hirsutum HOM05D001935 ORTHO05D001700 9.2e-06 54.7 187 28.9
Manes.06G062400 Manihot esculenta HOM05D001935 ORTHO05D001700 9.2e-06 54.7 191 26.7
Medtr1g108640 Medicago truncatula HOM05D001935 ORTHO05D001700 9.2e-06 54.7 109 35.8
Psat6g223000 Pisum sativum HOM05D001935 ORTHO05D001700 9.2e-06 54.7 109 35.8
QL02p049248 Quercus lobata HOM05D001935 ORTHO05D001700 9.2e-06 54.7 187 28.3


User provided reference genes

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