Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0200F.1_g086000 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 3.2e-298 1027.7 533 100.0
Dinv39868 Davidia involucrata HOM05D005929 ORTHO05D007869 2.6e-231 805.4 576 76.2
CSS0000081 Camellia sinensis var. sinensis HOM05D005929 ORTHO05D007869 3.7e-222 775.0 583 74.8
Actinidia16503 Actinidia chinensis HOM05D005929 ORTHO05D007869 1.8e-216 756.1 579 72.2
Cfa004003 Carpinus fangiana HOM05D005929 ORTHO05D007869 5.2e-216 754.6 590 71.5
Manes.12G099700 Manihot esculenta HOM05D005929 ORTHO05D007869 1.3e-211 740.0 583 69.8
Atru.chr3.351 Acer truncatum HOM05D005929 ORTHO05D007869 3.2e-210 735.3 588 69.4
GSVIVG01022148001 Vitis vinifera HOM05D005929 ORTHO05D007869 7.2e-210 734.2 578 69.2
CiPaw.01G019600 Carya illinoinensis HOM05D005929 ORTHO05D007869 2.1e-209 732.6 568 70.6
Rhsim08G0101600 Rhododendron simsii HOM05D005929 ORTHO05D007869 1.4e-208 729.9 609 67.7
TAR628G1297 Trochodendron aralioides HOM05D005929 ORTHO05D007869 2.6e-207 725.7 582 68.7
Cc07_g05890 Coffea canephora HOM05D005929 ORTHO05D007869 5.7e-207 724.5 564 69.0
CANSAT56G1082 Cannabis sativa HOM05D005929 ORTHO05D007869 1.7e-206 723.0 589 68.4
Prupe.7G135500 Prunus persica HOM05D005929 ORTHO05D007869 8.3e-206 720.7 586 67.9
ClCG01G016760 Citrullus lanatus HOM05D005929 ORTHO05D007869 9.1e-205 717.2 577 66.4
CsaV3_6G043190 Cucumis sativus L. HOM05D005929 ORTHO05D007869 1.6e-204 716.5 563 67.5
MD00G1045200 Malus domestica HOM05D005929 ORTHO05D007869 1.6e-204 716.5 591 67.7
RcHm_v2.0_Chr2g0105071 Rosa chinensis HOM05D005929 ORTHO05D007869 1.6e-204 716.5 582 68.0
TWI09G0459 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 1.6e-204 716.5 572 69.9
MELO3C007555.2 Cucumis melo HOM05D005929 ORTHO05D007869 2.7e-204 715.7 569 67.1
Ciclev10025029m.g Citrus clementina HOM05D005929 ORTHO05D007869 5.9e-204 714.5 580 68.6
Oeu039068.2 Olea europaea HOM05D005929 ORTHO05D007869 2.3e-203 712.6 536 70.3
COL.COLO4_11392 Corchorus olitorius HOM05D005929 ORTHO05D007869 3.8e-203 711.8 562 70.3
CiPaw.02G008900 Carya illinoinensis HOM05D005929 ORTHO05D007869 9.5e-202 707.2 578 68.3
Nn1g05837 Nelumbo nucifera HOM05D005929 ORTHO05D007869 9.5e-202 707.2 583 67.8
Potri.005G137100 Populus trichocarpa HOM05D005929 ORTHO05D007869 1.2e-201 706.8 575 66.4
FAN28G0152 Fragaria x ananassa HOM05D005929 ORTHO05D007869 2.1e-201 706.1 576 67.2
Duzib147G0952 Durio zibethinus HOM05D005929 ORTHO05D007869 1.0e-200 703.7 563 68.0
MBI06_g04503_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D007869 1.0e-200 703.7 595 66.6
FvH4_1g15790 Fragaria vesca HOM05D005929 ORTHO05D007869 1.4e-200 703.4 576 67.4
FAN26G1042 Fragaria x ananassa HOM05D005929 ORTHO05D007869 2.3e-200 702.6 576 67.0
FAN19G1416 Fragaria x ananassa HOM05D005929 ORTHO05D007869 3.0e-200 702.2 576 67.2
TPR.G19031 Trifolium pratense HOM05D005929 ORTHO05D007869 8.9e-200 700.7 578 66.6
Ca_21176_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 1.2e-199 700.3 574 66.6
FAN23G0057 Fragaria x ananassa HOM05D005929 ORTHO05D007869 2.6e-199 699.1 576 66.3
Sabra05G0109600 Salix brachista HOM05D005929 ORTHO05D007869 1.3e-198 696.8 576 67.2
MD02G1169700 Malus domestica HOM05D005929 ORTHO05D007869 1.7e-198 696.4 587 66.8
vmacro17944 Vaccinium macrocarpon HOM05D005929 ORTHO05D007869 1.7e-198 696.4 666 60.8
Thecc.01G053700 Theobroma cacao HOM05D005929 ORTHO05D007869 8.3e-198 694.1 558 69.2
Sed0025648 Sechium edule HOM05D005929 ORTHO05D007869 1.4e-197 693.3 578 64.2
Gorai.007G211400 Gossypium raimondii HOM05D005929 ORTHO05D007869 1.8e-197 693.0 564 67.4
Glyma.17G175900 Glycine max HOM05D005929 ORTHO05D007869 2.4e-197 692.6 577 66.6
Lj4g0006502 Lotus japonicus HOM05D005929 ORTHO05D007869 2.4e-197 692.6 571 66.7
Lalb_Chr05g0226621 Lupinus albus HOM05D005929 ORTHO05D007869 7.0e-197 691.0 582 64.8
Psat4g087280 Pisum sativum HOM05D005929 ORTHO05D007869 2.0e-196 689.5 578 64.7
Gohir.A11G190800 Gossypium hirsutum HOM05D005929 ORTHO05D007869 1.7e-195 686.4 536 69.8
TWI53G1997 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 2.9e-195 685.6 576 65.3
VMungo0251G2155 Vigna mungo HOM05D005929 ORTHO05D007869 6.6e-195 684.5 584 63.9
SGA_v2.0_scaffold15G07274 Striga asiatica HOM05D005929 ORTHO05D007869 1.1e-194 683.7 567 65.6
Phvul.003G244900 Phaseolus vulgaris HOM05D005929 ORTHO05D007869 2.5e-194 682.6 577 64.0
Gohir.D11G197600 Gossypium hirsutum HOM05D005929 ORTHO05D007869 4.3e-194 681.8 536 69.4
PGR102G2065 Punica granatum HOM05D005929 ORTHO05D007869 4.3e-194 681.8 582 63.9
MSTRG.23760 Avicennia marina HOM05D005929 ORTHO05D007869 2.8e-193 679.1 565 66.7
Glyma.05G084300 Glycine max HOM05D005929 ORTHO05D007869 2.8e-193 679.1 578 64.4
DCAR_010904 Daucus carota HOM05D005929 ORTHO05D007869 4.7e-193 678.3 577 66.2
arahy.Tifrunner.gnm1.ann1.UKY0C7 Arachis hypogaea HOM05D005929 ORTHO05D007869 4.0e-192 675.2 589 64.7
Lsat_1_v5_gn_4_168021 Lactuca sativa HOM05D005929 ORTHO05D007869 1.6e-188 663.3 539 67.3
PSO170G4100 Papaver somniferum HOM05D005929 ORTHO05D007869 1.7e-187 659.8 578 61.9
Gorai.003G022900 Gossypium raimondii HOM05D005929 ORTHO05D007869 6.6e-187 657.9 562 65.5
Migut.H00446 Erythranthe guttata HOM05D005929 ORTHO05D007869 1.5e-186 656.8 567 63.7
Nitab4.5_0010605g0010 Nicotiana tabacum HOM05D005929 ORTHO05D007869 1.9e-186 656.4 589 63.0
Gohir.D03G021300 Gossypium hirsutum HOM05D005929 ORTHO05D007869 1.2e-185 653.7 557 65.0
Lj4A143G78 Lonicera japonica HOM05D005929 ORTHO05D007869 1.2e-185 653.7 576 63.4
Gohir.A02G159200 Gossypium hirsutum HOM05D005929 ORTHO05D007869 2.8e-185 652.5 562 65.3
Sc03g0001480 Simmondsia chinensis HOM05D005929 ORTHO05D007869 4.7e-185 651.7 566 63.6
PSO210G3061 Papaver somniferum HOM05D005929 ORTHO05D007869 1.1e-184 650.6 578 61.2
THA.LOC104821272 Tarenaya hassleriana HOM05D005929 ORTHO05D007869 1.8e-184 649.8 576 63.4
PGSC0003DMG400015776 Solanum tuberosum HOM05D005929 ORTHO05D007869 4.9e-182 641.7 581 62.8
Solyc02g090650.4 Solanum lycopersicum HOM05D005929 ORTHO05D007869 6.4e-182 641.3 580 63.1
Peaxi162Scf00964g00160 Petunia axillaris HOM05D005929 ORTHO05D007869 8.3e-182 641.0 586 60.6
Hund13561 Selenicereus undatus HOM05D005929 ORTHO05D007869 1.4e-181 640.2 586 62.8
EL10Ac6g15157 Beta vulgaris HOM05D005929 ORTHO05D007869 1.2e-180 637.1 591 62.3
Sopen02g035300 Solanum pennellii HOM05D005929 ORTHO05D007869 2.1e-180 636.3 580 62.9
HanXRQChr15g0490721 Helianthus annuus HOM05D005929 ORTHO05D007869 4.6e-180 635.2 560 63.0
ECA232G2456 Erigeron canadensis HOM05D005929 ORTHO05D007869 4.3e-178 628.6 546 64.1
CAN.G836.71 Capsicum annuum HOM05D005929 ORTHO05D007869 7.3e-178 627.9 577 62.0
Thhalv10003742m.g Eutrema salsugineum HOM05D005929 ORTHO05D007869 1.2e-177 627.1 572 58.4
Aqoxy5G01270 Aquilegia oxysepala HOM05D005929 ORTHO05D007869 5.2e-176 621.7 602 58.8
Eucgr.H02007 Eucalyptus grandis HOM05D005929 ORTHO05D007869 1.5e-175 620.2 593 61.0
Nitab4.5_0000310g0090 Nicotiana tabacum HOM05D005929 ORTHO05D007869 3.7e-174 615.5 591 60.4
Sp2g29870 Schrenkiella parvula HOM05D005929 ORTHO05D007869 6.4e-174 614.8 568 58.3
Ah.03g144730 Amaranthus hybridus HOM05D005929 ORTHO05D007869 2.1e-172 609.8 590 60.0
AL8G44640 Arabidopsis lyrata HOM05D005929 ORTHO05D007869 2.1e-172 609.8 575 59.5
ATR0100G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 2.7e-172 609.4 573 59.0
HPP92_009382 Vanilla planifolia HOM05D005929 ORTHO05D007869 7.8e-172 607.8 564 62.1
Aa31LG1G15360 Aethionema arabicum HOM05D005929 ORTHO05D007869 1.3e-171 607.1 619 57.2
C07p24970 Brassica napus HOM05D005929 ORTHO05D007869 8.1e-169 597.8 562 58.2
BraA07t29438Z Brassica rapa HOM05D005929 ORTHO05D007869 1.1e-168 597.4 562 58.2
Carub.0008s2770 Capsella rubella HOM05D005929 ORTHO05D007869 1.4e-168 597.0 570 59.1
BcaC06g34750 Brassica carinata HOM05D005929 ORTHO05D007869 2.4e-168 596.3 562 57.5
A07p17110 Brassica napus HOM05D005929 ORTHO05D007869 2.6e-167 592.8 563 58.1
BcaB02g09988 Brassica carinata HOM05D005929 ORTHO05D007869 3.4e-167 592.4 563 58.1
BolC7t43027H Brassica oleracea HOM05D005929 ORTHO05D007869 1.6e-164 583.6 586 55.1
unitig_899.g14965 Utricularia gibba HOM05D005929 ORTHO05D007869 5.1e-163 578.6 574 59.1
Os10g0382300 Oryza sativa ssp. japonica HOM05D005929 ORTHO05D007869 5.6e-162 575.1 554 57.2
Zm00001eb223840 Zea mays HOM05D005929 ORTHO05D007869 9.9e-159 564.3 553 56.1
QL06p041881 Quercus lobata HOM05D005929 ORTHO05D007869 1.3e-158 563.9 454 69.8
AT5G66810 Arabidopsis thaliana HOM05D005929 ORTHO05D007869 1.3e-150 537.3 510 60.8
AUR62003860 Chenopodium quinoa HOM05D005929 ORTHO05D007869 1.8e-147 526.9 481 59.5
Hma1.2p1_0200F.1_g086010 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 1.4e-144 517.3 271 98.2
AUR62001947 Chenopodium quinoa HOM05D005929 ORTHO05D007869 5.8e-143 511.9 476 59.0
Cpa.g.sc55.172 Carica papaya HOM05D005929 ORTHO05D007869 3.4e-135 486.1 405 65.9
Ca_22183_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 1.8e-131 473.8 447 59.7
Duzib264G1189 Durio zibethinus HOM05D005929 ORTHO05D007869 1.4e-125 454.1 556 50.0
CARHR280890 Cardamine hirsuta HOM05D005929 ORTHO05D007869 6.7e-123 445.3 441 54.9
Lalb_Chr09g0333751 Lupinus albus HOM05D005929 ORTHO05D007869 2.0e-122 443.7 426 58.7
SalBow1G6022 Salvia bowleyana HOM05D005929 ORTHO05D007869 9.7e-106 388.3 295 68.8
Mapoly0148s0013 Marchantia polymorpha HOM05D005929 ORTHO05D007869 1.3e-102 377.9 651 38.6
Pp3c4_14260 Physcomitrium patens HOM05D005929 ORTHO05D007869 3.8e-102 376.3 625 39.0
CDE10G0678 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 3.6e-100 369.8 271 70.1
SMO116G0373 Selaginella moellendorffii HOM05D005929 ORTHO05D007869 6.1e-92 342.4 535 39.3
SEGI_10908 Sequoiadendron giganteum HOM05D005929 ORTHO05D000002 2.9e-78 297.0 438 42.7
DCAR_001419 Daucus carota HOM05D005929 ORTHO05D007869 5.1e-62 243.0 254 55.5
RcHm_v2.0_Chr7g0235891 Rosa chinensis HOM05D005929 ORTHO05D007869 1.6e-60 238.0 193 64.8
Lalb_Chr09g0333761 Lupinus albus HOM05D005929 ORTHO05D007869 1.5e-50 204.9 153 77.1
CDE10G0504 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 9.3e-48 195.7 270 45.2
PSO339G4212 Papaver somniferum HOM05D005929 ORTHO05D007869 1.3e-46 191.8 154 62.3
Haze_15421 Corylus avellana HOM05D005929 ORTHO05D007869 6.6e-46 189.5 303 43.9
QL06p041873 Quercus lobata HOM05D005929 ORTHO05D007869 2.8e-44 184.1 126 83.3
Cpa.g.sc55.170 Carica papaya HOM05D005929 ORTHO05D007869 1.4e-40 171.8 133 75.2
MD15G1282100 Malus domestica HOM05D005929 ORTHO05D007869 1.9e-40 171.4 97 89.7
ATR0833G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 1.3e-36 158.7 126 69.8
Dinv29975 Davidia involucrata HOM05D005929 ORTHO05D007869 1.3e-33 148.7 133 63.9
PSO782G4943 Papaver somniferum HOM05D005929 ORTHO05D007869 4.6e-31 140.2 105 71.4
Lsat_1_v5_gn_2_14601 Lactuca sativa HOM05D005929 ORTHO05D029973 1.1e-29 135.6 126 62.7
MBI08_g05057_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 9.3e-24 115.9 123 52.0
QL06p041946 Quercus lobata HOM05D005929 ORTHO05D007869 8.4e-17 92.8 143 43.4
Lsat_1_v5_gn_2_40080 Lactuca sativa HOM05D005929 ORTHO05D029973 2.0e-10 71.6 91 50.5
Cre01.g029050 Chlamydomonas reinhardtii HOM05D003178 ORTHO05D003636 1.0e-09 69.3 192 30.7
CARHR051520 Cardamine hirsuta HOM05D003178 ORTHO05D003636 7.9e-07 59.7 190 24.2
MBI16_g22817_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 2.3e-06 58.2 35 82.9
CAN.G363.39 Capsicum annuum HOM05D005929 ORTHO05D007869 8.8e-06 56.2 126 37.3


User provided reference genes

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