Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.9e-110 402.5 203 100.0
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.9e-110 402.5 203 100.0
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.9e-110 402.5 203 100.0
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.9e-110 402.5 203 100.0
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 4.6e-80 301.6 203 73.9
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 7.8e-80 300.8 203 72.9
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 7.8e-80 300.8 203 72.9
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 2.8e-77 292.4 203 71.4
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 6.2e-77 291.2 202 70.3
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 5.2e-76 288.1 201 71.6
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 8.9e-76 287.3 202 68.3
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 2.0e-75 286.2 203 70.4
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 3.4e-75 285.4 203 68.0
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 5.8e-75 284.6 203 69.0
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 7.5e-75 284.3 202 70.3
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 1.3e-74 283.5 202 70.3
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.9e-74 282.3 202 70.3
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 4.9e-74 281.6 202 69.3
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 8.3e-74 280.8 203 65.5
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 1.4e-73 280.0 203 68.0
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 1.4e-73 280.0 203 68.0
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.4e-73 280.0 203 65.5
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 1.9e-73 279.6 202 71.3
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 4.1e-73 278.5 202 68.3
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 7.1e-73 277.7 206 65.5
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 1.6e-72 276.6 203 64.0
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 1.6e-72 276.6 203 67.5
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 2.7e-72 275.8 202 70.3
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 2.7e-72 275.8 202 68.8
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 3.5e-72 275.4 203 65.5
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 4.6e-72 275.0 203 68.0
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 6.0e-72 274.6 200 70.5
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 6.0e-72 274.6 203 64.5
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 7.8e-72 274.2 203 67.5
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 7.8e-72 274.2 202 69.8
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 1.0e-71 273.9 203 63.5
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 5.1e-71 271.6 203 64.0
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 8.6e-71 270.8 202 65.8
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 8.6e-71 270.8 203 64.5
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 1.1e-70 270.4 203 63.5
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 1.5e-70 270.0 203 64.5
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.5e-70 270.0 203 66.5
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 3.3e-70 268.9 202 68.8
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 4.3e-70 268.5 202 65.8
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 5.6e-70 268.1 203 63.1
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 5.6e-70 268.1 205 63.9
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 9.5e-70 267.3 202 63.4
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 9.5e-70 267.3 203 61.6
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.8e-69 265.8 203 66.5
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 2.8e-69 265.8 204 65.2
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 3.6e-69 265.4 203 67.0
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 3.1e-68 262.3 203 64.0
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 3.1e-68 262.3 203 66.0
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 4.0e-68 261.9 203 65.5
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 4.0e-68 261.9 203 65.5
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 6.8e-68 261.2 202 62.9
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 6.8e-68 261.2 203 65.5
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.2e-67 260.4 199 64.3
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 1.2e-67 260.4 199 64.3
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 1.2e-67 260.4 203 65.0
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 1.5e-67 260.0 202 64.9
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 2.0e-67 259.6 202 66.3
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 5.8e-67 258.1 203 64.5
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 7.6e-67 257.7 204 62.3
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 7.6e-67 257.7 202 61.4
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 9.9e-67 257.3 202 61.4
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 4.9e-66 255.0 202 61.4
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 8.4e-66 254.2 202 62.9
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 1.1e-65 253.8 202 63.4
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 1.4e-65 253.4 201 61.2
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.4e-65 253.4 202 60.9
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 1.9e-65 253.1 203 63.1
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 7.8e-64 247.7 203 61.1
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 6.6e-63 244.6 202 60.4
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.5e-62 242.7 196 59.2
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 3.3e-62 242.3 202 57.4
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 1.2e-61 240.4 202 60.4
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 1.6e-61 240.0 204 59.3
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 2.8e-61 239.2 202 59.4
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 3.6e-61 238.8 204 58.8
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 8.1e-61 237.7 202 57.4
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 3.1e-60 235.7 205 58.0
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 5.2e-60 235.0 203 57.1
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 2.0e-59 233.0 202 59.9
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 5.8e-59 231.5 204 56.4
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 9.9e-59 230.7 206 57.3
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.3e-58 230.3 202 58.4
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.7e-58 229.9 206 57.8
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 2.2e-58 229.6 206 56.3
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.2e-58 229.6 207 55.6
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 6.4e-58 228.0 206 57.3
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 8.4e-58 227.6 206 57.3
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 1.9e-57 226.5 208 56.7
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.4e-57 226.1 207 56.5
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 2.4e-57 226.1 206 56.3
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 3.2e-57 225.7 205 57.1
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 3.2e-57 225.7 207 55.1
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 7.1e-57 224.6 203 53.2
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.2e-56 223.8 204 54.9
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 2.7e-56 222.6 205 55.1
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 6.0e-56 221.5 205 56.1
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 3.9e-55 218.8 179 62.0
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 1.5e-54 216.9 202 52.0
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 4.3e-54 215.3 204 56.4
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 5.6e-54 214.9 202 55.0
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 9.6e-54 214.2 189 56.6
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 1.3e-53 213.8 208 56.2
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.4e-52 209.5 208 54.8
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 5.8e-51 204.9 172 55.2
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.7e-50 203.4 205 51.2
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 3.8e-50 202.2 175 56.0
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 2.4e-49 199.5 202 49.0
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 5.4e-49 198.4 131 74.0
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 9.3e-49 197.6 205 49.8
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.2e-48 197.2 202 47.5
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 1.6e-48 196.8 205 51.7
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.6e-48 196.8 206 49.5
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 2.1e-48 196.4 201 52.2
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 3.5e-48 195.7 202 48.5
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 4.6e-48 195.3 203 49.3
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 3.0e-47 192.6 202 47.0
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 1.1e-46 190.7 206 47.1
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 5.6e-46 188.3 207 45.9
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 9.6e-46 187.6 202 45.0
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 3.6e-45 185.7 203 46.3
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 5.8e-43 178.3 196 47.4
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 8.4e-42 174.5 186 49.5
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 6.7e-39 164.9 198 44.9
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 5.6e-38 161.8 199 42.7
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 9.0e-36 154.5 200 42.5
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.5e-35 153.7 203 41.4
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 2.9e-34 149.4 200 38.5
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.4e-33 147.1 202 43.1
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.4e-33 147.1 208 40.9
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 5.5e-33 145.2 205 38.5
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.2e-32 144.1 199 41.2
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 6.7e-31 138.3 99 69.7
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 8.7e-31 137.9 104 62.5
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 1.9e-22 110.2 100 53.0
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.8e-20 103.6 127 39.4
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 9.0e-20 101.3 202 32.7
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 4.2e-17 92.4 85 48.2
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 4.6e-16 89.0 134 39.6
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 8.5e-10 68.2 196 28.6
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 1.8e-07 60.5 195 27.7
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 5.1e-07 58.9 196 25.5


User provided reference genes

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