Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.5e-181 639.4 321 100.0
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.5e-181 639.4 321 100.0
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 6.9e-115 417.9 313 70.9
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 7.9e-111 404.4 322 66.8
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 2.3e-110 402.9 272 73.5
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.3e-110 402.9 203 100.0
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.3e-110 402.9 203 100.0
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 3.9e-110 402.1 280 69.6
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 5.1e-110 401.7 339 64.9
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 1.3e-108 397.1 279 71.7
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 3.7e-108 395.6 326 65.0
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 6.9e-107 391.3 316 66.1
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.0e-106 389.8 319 64.9
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 2.0e-106 389.8 316 66.1
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 2.0e-106 389.8 278 70.9
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 2.6e-106 389.4 318 63.8
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 3.4e-106 389.0 326 59.8
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 1.7e-105 386.7 303 66.3
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.2e-105 386.3 313 62.6
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.9e-105 386.0 329 62.3
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.9e-105 386.0 302 66.9
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 3.8e-105 385.6 275 70.2
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 8.5e-105 384.4 294 67.7
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 8.5e-105 384.4 312 64.1
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.1e-104 384.0 299 65.2
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 1.6e-103 380.2 272 69.5
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 3.6e-103 379.0 270 66.3
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 2.3e-102 376.3 328 60.1
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 3.3e-101 372.5 322 58.4
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 1.3e-100 370.5 324 60.8
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 1.7e-100 370.2 327 61.2
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 2.2e-100 369.8 322 61.2
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 6.3e-100 368.2 322 57.8
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 1.1e-99 367.5 300 63.7
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 4.1e-99 365.5 331 61.3
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 5.3e-99 365.2 282 65.2
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 2.0e-98 363.2 283 66.8
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 4.5e-98 362.1 323 61.3
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 5.9e-98 361.7 293 60.1
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 5.9e-98 361.7 275 63.3
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 5.9e-98 361.7 287 64.8
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 5.9e-98 361.7 291 60.8
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 1.0e-97 360.9 275 63.3
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.2e-97 359.8 319 59.9
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 5.0e-97 358.6 286 64.3
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 1.4e-96 357.1 283 61.1
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 4.2e-96 355.5 293 58.7
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 7.2e-96 354.8 324 58.3
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 7.2e-96 354.8 290 63.1
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 9.4e-96 354.4 272 64.3
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 2.7e-95 352.8 290 62.8
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 4.7e-95 352.1 286 63.6
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 1.4e-94 350.5 294 61.9
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 1.8e-94 350.1 306 61.4
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 2.3e-94 349.7 269 65.4
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 3.0e-94 349.4 287 60.6
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 3.0e-94 349.4 282 63.8
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 8.8e-94 347.8 322 56.5
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.5e-93 347.1 314 57.3
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 2.0e-93 346.7 277 61.7
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 3.3e-93 345.9 311 59.2
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 4.4e-93 345.5 322 55.3
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 1.7e-92 343.6 318 56.0
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 4.8e-92 342.0 266 64.7
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 3.1e-91 339.3 286 62.6
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 1.2e-90 337.4 319 54.2
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.5e-90 337.0 283 58.0
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 1.7e-89 333.6 302 55.3
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 2.2e-89 333.2 271 61.3
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 3.8e-89 332.4 325 54.8
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 6.5e-89 331.6 280 61.1
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.4e-88 330.5 318 55.3
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 3.2e-88 329.3 318 54.7
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 4.2e-88 328.9 296 58.1
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.6e-87 327.0 305 54.1
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 2.1e-87 326.6 271 60.9
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 2.7e-87 326.2 262 67.2
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 4.7e-87 325.5 271 60.5
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 8.0e-87 324.7 313 55.9
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 8.0e-87 324.7 303 56.1
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.8e-86 323.6 303 54.8
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 1.5e-85 320.5 323 53.3
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 2.0e-85 320.1 271 59.4
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 2.8e-84 316.2 310 51.3
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 4.8e-84 315.5 296 53.7
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 4.8e-84 315.5 307 55.0
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 8.2e-84 314.7 324 53.7
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 8.2e-84 314.7 313 55.6
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.1e-83 314.3 323 53.6
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.1e-83 314.3 312 54.2
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 1.4e-83 313.9 320 53.8
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 1.8e-83 313.5 306 54.9
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 2.4e-83 313.2 313 54.0
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 9.1e-83 311.2 322 52.8
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 3.5e-82 309.3 270 57.4
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 3.5e-82 309.3 311 53.7
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 7.7e-82 308.1 272 58.1
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.0e-81 307.8 272 57.0
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 2.2e-81 306.6 319 53.0
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 5.0e-81 305.4 292 53.8
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 1.4e-78 297.4 274 55.8
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 6.8e-78 295.0 287 54.7
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 1.2e-77 294.3 359 48.7
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 4.4e-77 292.4 308 51.6
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 8.3e-76 288.1 285 53.7
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.1e-75 287.7 271 55.0
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.8e-73 279.3 315 48.3
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.1e-72 277.7 304 47.0
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 4.2e-72 275.8 266 51.1
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 5.5e-72 275.4 205 64.4
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 7.2e-72 275.0 200 70.5
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 6.1e-71 271.9 282 49.6
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.4e-70 270.8 319 47.3
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 8.8e-70 268.1 282 48.9
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.2e-69 267.7 305 46.9
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 1.5e-69 267.3 310 46.5
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 2.8e-68 263.1 307 44.6
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 3.7e-68 262.7 263 51.0
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 4.2e-64 249.2 320 45.9
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.2e-63 247.7 282 46.8
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.6e-63 246.1 261 49.4
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 8.0e-63 245.0 305 42.3
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 2.3e-62 243.4 295 46.8
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.1e-59 234.6 235 50.2
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.6e-58 230.7 257 45.5
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 2.7e-58 229.9 293 41.6
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.9e-58 228.8 110 100.0
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.9e-58 228.8 110 100.0
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 3.9e-57 226.1 213 57.3
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 6.1e-55 218.8 179 62.0
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 8.0e-55 218.4 289 40.8
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 5.4e-51 205.7 272 40.4
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 4.6e-50 202.6 175 56.0
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 8.6e-49 198.4 287 39.0
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 4.0e-46 189.5 262 41.2
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 8.9e-46 188.3 262 39.3
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 9.8e-45 184.9 267 38.6
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 3.5e-42 176.4 263 35.7
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.7e-33 147.5 208 40.9
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 1.1e-30 138.3 99 69.7
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 1.4e-22 111.3 102 52.9
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.7e-20 104.4 127 39.4
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 4.9e-20 102.8 207 32.4
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 3.9e-17 93.2 87 48.3
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 2.5e-16 90.5 79 54.4
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 5.6e-16 89.4 134 39.6
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 1.9e-11 74.3 264 26.1
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 5.4e-11 72.8 309 23.3
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 3.5e-10 70.1 304 25.0


User provided reference genes

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