Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0197F.1_g085110 Hydrangea macrophylla HOM05D004183 ORTHO05D008470 8.6e-105 383.6 191 100.0
Dinv38943 Davidia involucrata HOM05D000141 ORTHO05D001860 2.8e-31 139.4 116 63.8
Manes.01G060700 Manihot esculenta HOM05D000883 ORTHO05D008470 2.6e-29 132.9 116 60.3
Rhsim02G0231300 Rhododendron simsii HOM05D000883 ORTHO05D008470 4.5e-29 132.1 116 59.5
GSVIVG01019754001 Vitis vinifera HOM05D000883 ORTHO05D008470 2.2e-28 129.8 116 58.6
Actinidia02005 Actinidia chinensis HOM05D000883 ORTHO05D008470 5.0e-28 128.6 165 44.2
Actinidia14562 Actinidia chinensis HOM05D000883 ORTHO05D008470 2.5e-27 126.3 165 43.6
vmacro11334 Vaccinium macrocarpon HOM05D000883 ORTHO05D008470 9.4e-27 124.4 116 55.2
Ciclev10019111m.g Citrus clementina HOM05D000883 ORTHO05D008470 2.1e-26 123.2 168 43.5
TAR374G0271 Trochodendron aralioides HOM05D000883 ORTHO05D008470 6.1e-26 121.7 116 56.0
TAR375G0473 Trochodendron aralioides HOM05D000141 ORTHO05D001860 1.0e-25 120.9 116 56.0
Eucgr.E00597 Eucalyptus grandis HOM05D000883 ORTHO05D008470 1.4e-25 120.6 116 52.6
Haze_08833 Corylus avellana HOM05D000883 ORTHO05D008470 3.0e-25 119.4 116 56.0
Aqoxy7G00323 Aquilegia oxysepala HOM05D000883 ORTHO05D008470 3.9e-25 119.0 115 53.9
CiPaw.11G135300 Carya illinoinensis HOM05D000883 ORTHO05D008470 5.2e-25 118.6 116 55.2
CANSAT21G1555 Cannabis sativa HOM05D000883 ORTHO05D008470 6.7e-25 118.2 116 52.6
Potri.003G127600 Populus trichocarpa HOM05D000883 ORTHO05D008470 6.7e-25 118.2 116 54.3
AUR62010681 Chenopodium quinoa HOM05D000883 ORTHO05D008470 1.5e-24 117.1 116 50.9
MD06G1083100 Malus domestica HOM05D000883 ORTHO05D008470 1.5e-24 117.1 116 52.6
Atru.chr9.2189 Acer truncatum HOM05D000883 ORTHO05D008470 2.0e-24 116.7 116 51.7
MBI18_g21560_MAGBIO Magnolia biondii HOM05D000883 ORTHO05D008470 2.0e-24 116.7 165 43.0
CANSAT21G1792 Cannabis sativa HOM05D000883 ORTHO05D008470 2.6e-24 116.3 115 52.2
FAN08G2773 Fragaria x ananassa HOM05D000883 ORTHO05D008470 2.6e-24 116.3 116 52.6
FAN13G0852 Fragaria x ananassa HOM05D000883 ORTHO05D008470 2.6e-24 116.3 116 52.6
RcHm_v2.0_Chr7g0197691 Rosa chinensis HOM05D000883 ORTHO05D008470 2.6e-24 116.3 116 52.6
AUR62017201 Chenopodium quinoa HOM05D000883 ORTHO05D008470 4.4e-24 115.5 116 50.9
DCAR_006740 Daucus carota HOM05D000883 ORTHO05D008470 4.4e-24 115.5 116 53.4
QL12p033060 Quercus lobata HOM05D000883 ORTHO05D008470 4.4e-24 115.5 116 53.4
ECA233G4152 Erigeron canadensis HOM05D000883 ORTHO05D008470 5.7e-24 115.2 116 50.0
PGR042G3209 Punica granatum HOM05D000883 ORTHO05D008470 5.7e-24 115.2 160 41.9
FAN04G0265 Fragaria x ananassa HOM05D000883 ORTHO05D008470 7.4e-24 114.8 116 51.7
Thecc.03G278800 Theobroma cacao HOM05D000883 ORTHO05D008470 9.7e-24 114.4 116 51.7
Sc01g0009570 Simmondsia chinensis HOM05D000883 ORTHO05D008470 1.7e-23 113.6 162 43.2
THA.LOC104806407 Tarenaya hassleriana HOM05D000883 ORTHO05D008470 1.7e-23 113.6 115 53.0
ATR0680G152 Amborella trichopoda HOM05D000883 ORTHO05D008470 3.7e-23 112.5 165 40.6
MSTRG.25608 Avicennia marina HOM05D000883 ORTHO05D008470 3.7e-23 112.5 116 50.9
Ah.12g056900 Amaranthus hybridus HOM05D000883 ORTHO05D008470 4.8e-23 112.1 116 50.0
Duzib084G0727 Durio zibethinus HOM05D000883 ORTHO05D008470 8.2e-23 111.3 116 51.7
Hma1.2p1_1576F.1_g291650 Hydrangea macrophylla HOM05D006491 ORTHO05D008412 1.4e-22 110.5 55 94.5
FvH4_5g02410 Fragaria vesca HOM05D000883 ORTHO05D008470 1.8e-22 110.2 116 50.9
FAN18G1393 Fragaria x ananassa HOM05D000883 ORTHO05D008470 1.8e-22 110.2 116 50.9
Oeu009156.1 Olea europaea HOM05D000883 ORTHO05D008470 1.8e-22 110.2 141 45.4
Migut.A00763 Erythranthe guttata HOM05D000883 ORTHO05D008470 5.3e-22 108.6 116 47.4
HanXRQChr07g0189851 Helianthus annuus HOM05D000883 ORTHO05D008470 5.3e-22 108.6 116 47.4
Lsat_1_v5_gn_6_6541 Lactuca sativa HOM05D000883 ORTHO05D008470 7.0e-22 108.2 116 51.7
PSO478G3026 Papaver somniferum HOM05D000883 ORTHO05D008470 7.0e-22 108.2 165 38.8
Os02g0665200 Oryza sativa ssp. japonica HOM05D000883 ORTHO05D008470 1.2e-21 107.5 116 46.6
SGA_v2.0_scaffold173G39186 Striga asiatica HOM05D000883 ORTHO05D008470 1.2e-21 107.5 116 49.1
Gohir.D09G186500 Gossypium hirsutum HOM05D000883 ORTHO05D008470 2.0e-21 106.7 116 50.0
PSO782G1513 Papaver somniferum HOM05D000883 ORTHO05D008470 3.5e-21 105.9 115 49.6
VMungo0251G1923 Vigna mungo HOM05D000883 ORTHO05D008470 1.0e-20 104.4 115 49.6
Carub.0006s3037 Capsella rubella HOM05D000883 ORTHO05D008470 1.3e-20 104.0 118 48.3
Cc08_g14750 Coffea canephora HOM05D000883 ORTHO05D008470 1.3e-20 104.0 115 52.2
Zm00001eb186850 Zea mays HOM05D000883 ORTHO05D008470 1.3e-20 104.0 116 46.6
EL10Ac5g13062 Beta vulgaris HOM05D000883 ORTHO05D008470 1.7e-20 103.6 148 40.5
Thhalv10028506m.g Eutrema salsugineum HOM05D000883 ORTHO05D008470 2.2e-20 103.2 118 46.6
Gorai.006G209300 Gossypium raimondii HOM05D000883 ORTHO05D008470 2.9e-20 102.8 116 49.1
Lalb_Chr16g0389991 Lupinus albus HOM05D000883 ORTHO05D008470 2.9e-20 102.8 116 50.9
AT4G11440 Arabidopsis thaliana HOM05D000883 ORTHO05D008470 5.0e-20 102.1 118 47.5
CARHR255110 Cardamine hirsuta HOM05D000883 ORTHO05D008470 6.5e-20 101.7 118 46.6
Phvul.002G289600 Phaseolus vulgaris HOM05D000883 ORTHO05D008470 6.5e-20 101.7 116 49.1
Glyma.05G208000 Glycine max HOM05D000883 ORTHO05D008470 8.5e-20 101.3 116 49.1
CsaV3_5G002800 Cucumis sativus L. HOM05D000883 ORTHO05D008470 1.1e-19 100.9 116 50.0
Sp6g06000 Schrenkiella parvula HOM05D000883 ORTHO05D008470 1.1e-19 100.9 118 46.6
Sed0006846 Sechium edule HOM05D000883 ORTHO05D008470 1.1e-19 100.9 116 49.1
AL6G45880 Arabidopsis lyrata HOM05D000883 ORTHO05D008470 1.9e-19 100.1 118 47.5
Psat7g033160 Pisum sativum HOM05D000883 ORTHO05D008470 1.9e-19 100.1 116 49.1
CSS0003376 Camellia sinensis var. sinensis HOM05D000883 ORTHO05D008470 2.5e-19 99.8 90 58.9
CSS0021014 Camellia sinensis var. sinensis HOM05D000883 ORTHO05D008470 2.5e-19 99.8 90 58.9
Lj4g0009030 Lotus japonicus HOM05D000883 ORTHO05D008470 2.5e-19 99.8 116 48.3
COL.COLO4_34463 Corchorus olitorius HOM05D000883 ORTHO05D008470 3.2e-19 99.4 60 73.3
unitig_32.g11600 Utricularia gibba HOM05D000883 ORTHO05D008470 3.2e-19 99.4 111 50.5
BcaC03g16351 Brassica carinata HOM05D000883 ORTHO05D008470 4.2e-19 99.0 118 46.6
A02p26250 Brassica napus HOM05D000883 ORTHO05D008470 4.2e-19 99.0 118 46.6
C02p41750 Brassica napus HOM05D000883 ORTHO05D008470 4.2e-19 99.0 118 46.6
BolC2t10191H Brassica oleracea HOM05D000883 ORTHO05D008470 4.2e-19 99.0 118 46.6
BraA02t07626Z Brassica rapa HOM05D000883 ORTHO05D008470 4.2e-19 99.0 118 46.6
TPR.G12783 Trifolium pratense HOM05D000883 ORTHO05D008470 5.5e-19 98.6 116 48.3
SEGI_05823 Sequoiadendron giganteum HOM05D000883 ORTHO05D008470 7.2e-19 98.2 115 46.1
BcaB05g23827 Brassica carinata HOM05D000883 ORTHO05D008470 1.6e-18 97.1 118 45.8
Peaxi162Scf00119g00945 Petunia axillaris HOM05D000883 ORTHO05D008470 1.6e-18 97.1 116 50.0
Peaxi162Scf00147g00176 Petunia axillaris HOM05D000883 ORTHO05D008470 2.1e-18 96.7 116 49.1
Sabra03G0090800 Salix brachista HOM05D000883 ORTHO05D008470 2.7e-18 96.3 60 73.3
HPP92_015170 Vanilla planifolia HOM05D000883 ORTHO05D008470 2.7e-18 96.3 113 46.0
Aa31LG9G10790 Aethionema arabicum HOM05D000883 ORTHO05D008470 3.6e-18 95.9 120 45.0
Ca_17532_v3 Cicer arietinum L. HOM05D000883 ORTHO05D008470 6.1e-18 95.1 116 47.4
Nitab4.5_0010968g0050 Nicotiana tabacum HOM05D000883 ORTHO05D008470 1.0e-17 94.4 118 51.7
Prupe.5G100200 Prunus persica HOM05D000883 ORTHO05D008470 1.4e-17 94.0 60 70.0
Medtr8g098240 Medicago truncatula HOM05D000883 ORTHO05D008470 1.8e-17 93.6 116 48.3
PGSC0003DMG400012208 Solanum tuberosum HOM05D000883 ORTHO05D008470 2.6e-16 89.7 116 47.4
Solyc08g081070.3 Solanum lycopersicum HOM05D000883 ORTHO05D008470 7.5e-16 88.2 116 46.6
Sopen08g029390 Solanum pennellii HOM05D000883 ORTHO05D008470 7.5e-16 88.2 116 46.6
CAN.G774.41 Capsicum annuum HOM05D000883 ORTHO05D008470 1.3e-15 87.4 116 46.6
MBI18_g23336_MAGBIO Magnolia biondii HOM05D000883 ORTHO05D008470 4.8e-15 85.5 59 74.6
SMO147G0434 Selaginella moellendorffii HOM05D000883 ORTHO05D008470 8.2e-15 84.7 124 37.9
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 1.8e-14 83.6 105 48.6
Pp3c21_5550 Physcomitrium patens HOM05D000883 ORTHO05D008470 9.1e-14 81.3 124 37.9
CBR_g32117 Chara braunii HOM05D000883 ORTHO05D008470 2.0e-13 80.1 133 40.6
Glyma.08G014700 Glycine max HOM05D000883 ORTHO05D008470 4.5e-13 79.0 52 73.1
Pp3c18_13120 Physcomitrium patens HOM05D000883 ORTHO05D008470 1.0e-12 77.8 115 39.1
Pp3c21_6200 Physcomitrium patens HOM05D000883 ORTHO05D008470 3.8e-12 75.9 68 50.0
Hma1.2p1_1265F.1_g271350 Hydrangea macrophylla HOM05D000467 ORTHO05D011240 8.5e-12 74.7 57 71.9
Hma1.2p1_0312F.1_g121470 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.1e-11 74.3 41 90.2
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 1.9e-11 73.6 45 80.0
Hma1.2p1_0386F.1_g141900 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.9e-11 73.6 41 90.2
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 9.4e-11 71.2 46 73.9
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 1.2e-10 70.9 46 69.6
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 1.2e-10 70.9 45 73.3
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 1.6e-10 70.5 46 73.9
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 2.1e-10 70.1 70 50.0
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 3.6e-10 69.3 48 64.6
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 6.1e-10 68.6 48 62.5
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 8.0e-10 68.2 46 69.6
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 1.0e-09 67.8 45 68.9
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 1.0e-09 67.8 46 67.4
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 1.4e-09 67.4 52 57.7
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.4e-09 67.4 70 48.6
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 1.8e-09 67.0 63 55.6
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 1.8e-09 67.0 54 63.0
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 2.3e-09 66.6 52 57.7
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 3.0e-09 66.2 54 63.0
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 3.0e-09 66.2 61 52.5
TWI15G0376 Tripterygium wilfordii HOM05D000883 ORTHO05D008470 4.0e-09 65.9 33 90.9
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 5.2e-09 65.5 44 61.4
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 8.8e-09 64.7 40 82.5
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 1.2e-08 64.3 45 66.7
PRCOL_00001401 Prasinoderma coloniale HOM05D001639 ORTHO05D008470 1.5e-08 63.9 65 50.8
arahy.Tifrunner.gnm1.ann1.3KPW58 Arachis hypogaea HOM05D000883 ORTHO05D008470 2.0e-08 63.5 46 60.9
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 2.0e-08 63.5 46 65.2
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 2.0e-08 63.5 69 46.4
Psat7g046880 Pisum sativum HOM05D000883 ORTHO05D008470 2.6e-08 63.2 57 49.1
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 5.7e-08 62.0 63 54.0
ClCG01G002700 Citrullus lanatus HOM05D000883 ORTHO05D008470 1.3e-07 60.8 33 75.8
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 1.3e-07 60.8 59 54.2
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 1.3e-07 60.8 47 59.6
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 1.7e-07 60.5 46 56.5
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.7e-07 60.5 47 57.4
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 1.7e-07 60.5 51 54.9
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 2.2e-07 60.1 45 64.4
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 2.2e-07 60.1 47 57.4
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 2.2e-07 60.1 51 56.9
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 2.2e-07 60.1 54 55.6
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 2.8e-07 59.7 64 48.4
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 3.7e-07 59.3 45 62.2
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 3.7e-07 59.3 63 50.8
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 3.7e-07 59.3 47 57.4
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 3.7e-07 59.3 46 60.9
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 3.7e-07 59.3 64 46.9
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 4.8e-07 58.9 47 57.4
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 4.8e-07 58.9 47 57.4
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 6.3e-07 58.5 64 45.3
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 6.3e-07 58.5 46 60.9
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 6.3e-07 58.5 46 60.9
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 1.1e-06 57.8 51 54.9
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 1.1e-06 57.8 51 52.9
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 1.1e-06 57.8 46 60.9
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 1.4e-06 57.4 64 43.8
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.4e-06 57.4 47 55.3
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 1.4e-06 57.4 65 43.1
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 1.8e-06 57.0 47 55.3
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 1.8e-06 57.0 43 62.8
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 1.8e-06 57.0 69 43.5
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.4e-06 56.6 64 45.3
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 3.1e-06 56.2 48 54.2
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 3.1e-06 56.2 51 54.9
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 3.1e-06 56.2 51 54.9
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 4.1e-06 55.8 46 56.5
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 4.1e-06 55.8 43 51.2
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 5.4e-06 55.5 43 51.2
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 7.0e-06 55.1 46 52.2
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 7.0e-06 55.1 47 53.2


User provided reference genes

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