Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0192F.1_g083730 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 3.3e-46 188.0 92 100.0
Hma1.2p1_0247F.1_g101832 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 3.3e-46 188.0 92 100.0
Hma1.2p1_0298F.1_g117734 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 3.3e-46 188.0 92 100.0
Hma1.2p1_0818F.1_g223303 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 3.3e-46 188.0 92 100.0
DCAR_032526 Daucus carota HOM05D000540 ORTHO05D009557 3.1e-44 181.4 92 95.7
HanXRQChr10g0318011 Helianthus annuus HOM05D000540 ORTHO05D009557 4.1e-44 181.0 92 94.6
Lsat_1_v5_gn_0_41560 Lactuca sativa HOM05D000540 ORTHO05D000681 6.9e-44 180.3 92 94.6
Potri.013G137688 Populus trichocarpa HOM05D000540 ORTHO05D009557 2.0e-43 178.7 92 92.4
Lalb_Chr25g0283401 Lupinus albus HOM05D000540 ORTHO05D009557 7.7e-43 176.8 92 89.1
PGR111G0101 Punica granatum HOM05D000540 ORTHO05D009557 1.0e-42 176.4 92 91.3
Potri.005G154674 Populus trichocarpa HOM05D000540 ORTHO05D009557 2.2e-42 175.3 92 90.2
CARHR282280 Cardamine hirsuta HOM05D000540 ORTHO05D009557 5.0e-42 174.1 92 89.1
PSO548G0068 Papaver somniferum HOM05D000540 ORTHO05D009557 5.0e-42 174.1 92 90.2
Potri.011G074301 Populus trichocarpa HOM05D000540 ORTHO05D009557 8.5e-42 173.3 92 90.2
C03p38140 Brassica napus HOM05D000540 ORTHO05D009557 1.1e-41 172.9 92 88.0
BolSC35t60674H Brassica oleracea HOM05D000540 ORTHO05D009557 1.1e-41 172.9 92 88.0
BraSC59t46567Z Brassica rapa HOM05D000540 ORTHO05D009557 1.1e-41 172.9 92 88.0
Medtr3g035720 Medicago truncatula HOM05D000540 ORTHO05D009557 1.4e-41 172.6 92 89.1
Medtr4g051420 Medicago truncatula HOM05D000540 ORTHO05D009557 1.4e-41 172.6 92 89.1
arahy.Tifrunner.gnm1.ann1.YHR3P6 Arachis hypogaea HOM05D000540 ORTHO05D009557 1.6e-40 169.1 87 92.0
Lsat_1_v5_gn_5_50501 Lactuca sativa HOM05D000540 ORTHO05D009557 7.9e-40 166.8 87 92.0
CARHR114570 Cardamine hirsuta HOM05D000540 ORTHO05D009557 1.4e-39 166.0 91 86.8
BolC9t56905H Brassica oleracea HOM05D000540 ORTHO05D009557 3.0e-39 164.9 92 85.9
Peaxi162Scf00299g00117 Petunia axillaris HOM05D000540 ORTHO05D009557 3.3e-38 161.4 98 83.7
Gohir.A12G089750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 1.2e-35 152.9 80 90.0
BolSC35t60725H Brassica oleracea HOM05D000540 ORTHO05D000681 5.9e-35 150.6 79 87.3
C09p40100 Brassica napus HOM05D000540 ORTHO05D000681 5.0e-34 147.5 79 86.1
Gohir.A02G076002 Gossypium hirsutum HOM05D000540 ORTHO05D009557 1.1e-33 146.4 86 81.4
Gohir.D06G105033 Gossypium hirsutum HOM05D000540 ORTHO05D009557 6.1e-32 140.6 75 88.0
Lsat_1_v5_gn_3_22600 Lactuca sativa HOM05D000540 ORTHO05D000681 4.0e-31 137.9 90 75.6
Hund29685 Selenicereus undatus HOM05D002578 ORTHO05D009557 6.7e-31 137.1 74 87.8
Hund30542 Selenicereus undatus HOM05D002578 ORTHO05D009557 6.7e-31 137.1 74 87.8
Hund31295 Selenicereus undatus HOM05D002578 ORTHO05D009557 6.7e-31 137.1 74 87.8
Gorai.004G123300 Gossypium raimondii HOM05D000540 ORTHO05D009557 1.5e-30 136.0 77 80.5
Hund31045 Selenicereus undatus HOM05D000540 ORTHO05D000681 3.7e-29 131.3 90 71.1
Gohir.D04G028750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 6.3e-29 130.6 77 83.1
MBI12_g23294_MAGBIO Magnolia biondii HOM05D000540 ORTHO05D009557 4.1e-28 127.9 87 73.6
PSO541G1563 Papaver somniferum HOM05D000540 ORTHO05D009557 1.2e-27 126.3 93 65.6
SMO086G0012 Selaginella moellendorffii HOM05D000540 ORTHO05D009557 1.6e-27 125.9 90 64.4
Aqoxy3G00098 Aquilegia oxysepala HOM05D000540 ORTHO05D009557 6.5e-26 120.6 82 67.1
Hund04059 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund19321 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund26846 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund27592 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund27964 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund28044 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund28461 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund28465 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund28634 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund29039 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund29219 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund29502 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund29527 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund29546 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund29570 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund29607 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund29614 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund29663 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund29959 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund30110 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund30114 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund30274 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
Hund30581 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-25 119.0 63 90.5
MBI12_g26681_MAGBIO Magnolia biondii HOM05D002578 ORTHO05D009557 4.2e-25 117.9 67 82.1
Lj2P692T49 Lonicera japonica HOM05D000540 ORTHO05D009557 7.2e-25 117.1 63 84.1
Medtr0002s0360 Medicago truncatula HOM05D000540 ORTHO05D000681 7.2e-25 117.1 82 68.3
Medtr0002s0800 Medicago truncatula HOM05D000540 ORTHO05D000681 7.2e-25 117.1 82 68.3
FvH4_6g09000 Fragaria vesca HOM05D000445 ORTHO05D000314 9.4e-25 116.7 56 96.4
Prupe.4G266600 Prunus persica HOM05D000540 ORTHO05D009557 2.1e-24 115.5 69 82.6
Potri.019G013302 Populus trichocarpa HOM05D000540 ORTHO05D009557 3.6e-24 114.8 66 80.3
Oeu025653.1 Olea europaea HOM05D000218 ORTHO05D000125 4.4e-22 107.8 83 60.2
BolSC29t60614H Brassica oleracea HOM05D000540 ORTHO05D009557 9.8e-22 106.7 59 86.4
Oeu011524.2 Olea europaea HOM05D000218 ORTHO05D000125 1.7e-21 105.9 68 69.1
PSO675G4368 Papaver somniferum HOM05D000540 ORTHO05D009557 2.2e-21 105.5 68 70.6
Gorai.005G167500 Gossypium raimondii HOM05D000540 ORTHO05D009557 4.8e-21 104.4 62 83.9
Nn021s41517 Nelumbo nucifera HOM05D000540 ORTHO05D009557 4.8e-21 104.4 49 95.9
Nn070s42375 Nelumbo nucifera HOM05D000540 ORTHO05D009557 4.8e-21 104.4 49 95.9
HanXRQChr15g0494391 Helianthus annuus HOM05D000540 ORTHO05D009557 1.1e-20 103.2 73 67.1
Nitab4.5_0001783g0160 Nicotiana tabacum HOM05D000540 ORTHO05D009557 1.1e-20 103.2 76 67.1
RcHm_v2.0_CPg0501831 Rosa chinensis HOM05D000540 ORTHO05D009557 1.8e-20 102.4 49 93.9
Glyma.18G078500 Glycine max HOM05D000540 ORTHO05D009557 2.4e-20 102.1 49 93.9
Oeu028768.1 Olea europaea HOM05D000540 ORTHO05D009557 3.1e-20 101.7 49 95.9
arahy.Tifrunner.gnm1.ann1.CR1XRQ Arachis hypogaea HOM05D003165 ORTHO05D009557 4.1e-20 101.3 58 79.3
HanXRQChr11g0337241 Helianthus annuus HOM05D000540 ORTHO05D009557 5.4e-20 100.9 73 65.8
SGA_v2.0_scaffold126G33916 Striga asiatica HOM05D000218 ORTHO05D000125 5.4e-20 100.9 73 58.9
RcHm_v2.0_Chr1g0329571 Rosa chinensis HOM05D000540 ORTHO05D009557 7.0e-20 100.5 49 91.8
Gohir.D05G303851 Gossypium hirsutum HOM05D000540 ORTHO05D009557 9.1e-20 100.1 49 91.8
Oeu001341.1 Olea europaea HOM05D000218 ORTHO05D000125 9.1e-20 100.1 68 64.7
MSTRG.19148 Avicennia marina HOM05D000218 ORTHO05D000125 2.0e-19 99.0 86 52.3
ECA236G4531 Erigeron canadensis HOM05D000540 ORTHO05D009557 2.7e-19 98.6 73 64.4
Lalb_Chr13g0292571 Lupinus albus HOM05D000540 ORTHO05D009557 3.5e-19 98.2 53 84.9
Nn4g25228 Nelumbo nucifera HOM05D000540 ORTHO05D009557 4.5e-19 97.8 49 89.8
CDE04G1374 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 7.7e-19 97.1 70 58.6
CDE07G1014 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 7.7e-19 97.1 70 58.6
AL1G45050 Arabidopsis lyrata HOM05D000540 ORTHO05D009557 1.0e-18 96.7 49 85.7
AL2G20510 Arabidopsis lyrata HOM05D000540 ORTHO05D009557 1.0e-18 96.7 49 85.7
BNapus_Darmor_BZH_scaffold_253p00380 Brassica napus HOM05D000540 ORTHO05D009557 1.0e-18 96.7 49 85.7
BolSC56t61244H Brassica oleracea HOM05D000540 ORTHO05D009557 1.0e-18 96.7 49 85.7
BraSC103t45442Z Brassica rapa HOM05D000540 ORTHO05D009557 1.0e-18 96.7 49 85.7
Lsat_1_v5_gn_7_110000 Lactuca sativa HOM05D000540 ORTHO05D009557 1.3e-18 96.3 73 64.4
RcHm_v2.0_Chr2g0118531 Rosa chinensis HOM05D000540 ORTHO05D009557 1.7e-18 95.9 49 91.8
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 2.2e-18 95.5 92 45.7
BolC7t41706H Brassica oleracea HOM05D000540 ORTHO05D009557 3.8e-18 94.7 49 83.7
Lsat_1_v5_gn_5_185760 Lactuca sativa HOM05D000540 ORTHO05D009557 6.5e-18 94.0 73 63.0
unitig_699.g19584 Utricularia gibba HOM05D000218 ORTHO05D000125 3.2e-17 91.7 80 55.0
MBI12_g18826_MAGBIO Magnolia biondii HOM05D000540 ORTHO05D009557 5.5e-17 90.9 48 83.3
PSO675G7318 Papaver somniferum HOM05D000540 ORTHO05D009557 2.3e-15 85.5 56 66.1
Sc25g0002530 Simmondsia chinensis HOM05D000540 ORTHO05D000681 2.3e-15 85.5 58 70.7
PSO349G0315 Papaver somniferum HOM05D000540 ORTHO05D009557 1.2e-14 83.2 56 62.5
Nitab4.5_0004376g0170 Nicotiana tabacum HOM05D002578 ORTHO05D009557 1.4e-12 76.3 37 94.6
Migut.J00430 Erythranthe guttata HOM05D000540 ORTHO05D009557 4.1e-12 74.7 64 54.7
Medtr8g038480 Medicago truncatula HOM05D000540 ORTHO05D009557 2.7e-11 72.0 38 81.6
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 2.3e-10 68.9 86 45.3
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 6.6e-10 67.4 86 44.2
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 1.5e-09 66.2 86 43.0
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 2.5e-09 65.5 89 40.4
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 2.5e-09 65.5 82 43.9
BraA01t03249Z Brassica rapa HOM05D000540 ORTHO05D008105 4.3e-09 64.7 89 40.4
BolC1t03932H Brassica oleracea HOM05D000540 ORTHO05D008105 7.3e-09 63.9 89 40.4
DCAR_015262 Daucus carota HOM05D000540 ORTHO05D008105 7.3e-09 63.9 86 44.2
BcaB04g20419 Brassica carinata HOM05D000540 ORTHO05D008105 9.5e-09 63.5 86 41.9
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 9.5e-09 63.5 86 41.9
BcaC06g35575 Brassica carinata HOM05D000540 ORTHO05D008105 9.5e-09 63.5 86 41.9
A01p31250 Brassica napus HOM05D000540 ORTHO05D008105 9.5e-09 63.5 86 41.9
A03p43380 Brassica napus HOM05D000540 ORTHO05D008105 9.5e-09 63.5 86 41.9
A07p08550 Brassica napus HOM05D000540 ORTHO05D008105 9.5e-09 63.5 86 41.9
C07p13360 Brassica napus HOM05D000540 ORTHO05D008105 9.5e-09 63.5 86 41.9
BolC7t41830H Brassica oleracea HOM05D000540 ORTHO05D008105 9.5e-09 63.5 86 41.9
BraA03t13476Z Brassica rapa HOM05D000540 ORTHO05D008105 9.5e-09 63.5 86 41.9
BraA07t28644Z Brassica rapa HOM05D000540 ORTHO05D008105 9.5e-09 63.5 86 41.9
Nn6g34181 Nelumbo nucifera HOM05D000540 ORTHO05D009557 9.5e-09 63.5 60 53.3
Sp3g21530 Schrenkiella parvula HOM05D000540 ORTHO05D008105 9.5e-09 63.5 86 41.9
Thhalv10002665m.g Eutrema salsugineum HOM05D000540 ORTHO05D008105 1.2e-08 63.2 85 42.4
Hund07747 Selenicereus undatus HOM05D000540 ORTHO05D008105 1.6e-08 62.8 90 43.3
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 2.1e-08 62.4 77 44.2
Sc06g0008940 Simmondsia chinensis HOM05D000540 ORTHO05D008105 2.1e-08 62.4 75 46.7
Ah.08g216160 Amaranthus hybridus HOM05D000540 ORTHO05D008105 2.8e-08 62.0 91 42.9
BcaC01g03363 Brassica carinata HOM05D000540 ORTHO05D008105 2.8e-08 62.0 87 42.5
BolC3t17591H Brassica oleracea HOM05D000540 ORTHO05D008105 2.8e-08 62.0 87 42.5
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 2.8e-08 62.0 77 44.2
C03p53300 Brassica napus HOM05D000540 ORTHO05D008105 4.7e-08 61.2 87 42.5
Cre08.g375250 Chlamydomonas reinhardtii HOM05D000540 ORTHO05D009557 4.7e-08 61.2 88 39.8
FvH4_5g23230 Fragaria vesca HOM05D000540 ORTHO05D008105 1.0e-07 60.1 59 47.5
FAN04G1833 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.0e-07 60.1 59 47.5
FAN18G0695 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.0e-07 60.1 59 47.5
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.0e-07 60.1 59 47.5
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 1.0e-07 60.1 69 46.4
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 1.0e-07 60.1 83 42.2
Zm00001eb321840 Zea mays HOM05D000540 ORTHO05D008105 1.0e-07 60.1 83 42.2
Zm00001eb321850 Zea mays HOM05D000540 ORTHO05D008105 1.0e-07 60.1 83 42.2
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 1.4e-07 59.7 77 41.6
Peaxi162Scf00211g00236 Petunia axillaris HOM05D000540 ORTHO05D000681 1.4e-07 59.7 27 100.0
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 1.8e-07 59.3 74 43.2
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 1.8e-07 59.3 59 47.5
Aa31LG8G10410 Aethionema arabicum HOM05D000540 ORTHO05D008105 2.3e-07 58.9 83 39.8
BraSC138t45550Z Brassica rapa HOM05D000540 ORTHO05D009557 2.3e-07 58.9 30 80.0
FAN08G1475 Fragaria x ananassa HOM05D000540 ORTHO05D008105 3.0e-07 58.5 59 45.8
Eucgr.D00430 Eucalyptus grandis HOM05D000540 ORTHO05D008105 4.0e-07 58.2 92 38.0
Zm00001eb003570 Zea mays HOM05D000540 ORTHO05D008105 5.2e-07 57.8 83 41.0
Zm00001eb049250 Zea mays HOM05D000540 ORTHO05D008105 5.2e-07 57.8 83 41.0
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 8.9e-07 57.0 74 41.9
CsaV3_2G032570 Cucumis sativus L. HOM05D000540 ORTHO05D008105 8.9e-07 57.0 75 41.3
Mapoly0157s0025 Marchantia polymorpha HOM05D000540 ORTHO05D008105 1.2e-06 56.6 77 42.9
AagrBONN_evm.TU.Sc2ySwM_228.180 Anthoceros agrestis HOM05D000540 ORTHO05D008105 1.5e-06 56.2 77 40.3
Ciclev10002977m.g Citrus clementina HOM05D000540 ORTHO05D008105 1.5e-06 56.2 75 41.3
MELO3C011310.2 Cucumis melo HOM05D000540 ORTHO05D008105 1.5e-06 56.2 75 40.0
SGA_v2.0_scaffold123G33382 Striga asiatica HOM05D000540 ORTHO05D400302 2.0e-06 55.8 34 73.5
A09p08050 Brassica napus HOM05D000856 ORTHO05D001792 2.6e-06 55.5 75 36.0
C09p09120 Brassica napus HOM05D000856 ORTHO05D001792 3.4e-06 55.1 78 37.2
BolC9t53824H Brassica oleracea HOM05D000856 ORTHO05D001792 3.4e-06 55.1 78 37.2
CARHR276880 Cardamine hirsuta HOM05D000856 ORTHO05D001792 3.4e-06 55.1 87 36.8
AT5G63070 Arabidopsis thaliana HOM05D000856 ORTHO05D001792 5.7e-06 54.3 84 35.7
Carub.0008s2379 Capsella rubella HOM05D000856 ORTHO05D001792 5.7e-06 54.3 84 38.1
SMO358G0711 Selaginella moellendorffii HOM05D000540 ORTHO05D008105 5.7e-06 54.3 90 37.8
Gorai.005G267300 Gossypium raimondii HOM05D000540 ORTHO05D008105 7.5e-06 53.9 83 39.8
Thecc.02G009100 Theobroma cacao HOM05D000540 ORTHO05D008105 7.5e-06 53.9 69 43.5
Atru.chr1.3246 Acer truncatum HOM05D000540 ORTHO05D008105 9.8e-06 53.5 75 38.7
BraA09t36458Z Brassica rapa HOM05D000856 ORTHO05D001792 9.8e-06 53.5 72 36.1
CANSAT16G0016 Cannabis sativa HOM05D000540 ORTHO05D008105 9.8e-06 53.5 75 40.0
Gohir.A03G217200 Gossypium hirsutum HOM05D000540 ORTHO05D008105 9.8e-06 53.5 83 39.8
Gohir.D02G238800 Gossypium hirsutum HOM05D000540 ORTHO05D008105 9.8e-06 53.5 83 39.8


User provided reference genes

Program Settings