Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0187F.1_g082200 Hydrangea macrophylla HOM05D000367 ORTHO05D004574 2.1e-41 171.8 79 100.0
Oeu008458.1 Olea europaea HOM05D000367 ORTHO05D004574 4.1e-37 157.5 79 91.1
Cc01_g21260 Coffea canephora HOM05D000175 ORTHO05D004574 1.6e-36 155.6 79 89.9
Ciclev10020947m.g Citrus clementina HOM05D000175 ORTHO05D004574 6.0e-36 153.7 79 88.6
Dinv10077 Davidia involucrata HOM05D000175 ORTHO05D004574 1.3e-35 152.5 79 88.6
Duzib138G1732 Durio zibethinus HOM05D000175 ORTHO05D004574 1.3e-35 152.5 79 88.6
Gorai.007G123700 Gossypium raimondii HOM05D000175 ORTHO05D004574 1.3e-35 152.5 79 88.6
Gorai.007G123900 Gossypium raimondii HOM05D000175 ORTHO05D004574 1.3e-35 152.5 79 88.6
Actinidia21009 Actinidia chinensis HOM05D000175 ORTHO05D004574 1.7e-35 152.1 79 88.6
Duzib211G0540 Durio zibethinus HOM05D000175 ORTHO05D004574 2.3e-35 151.8 79 86.1
Glyma.03G218300 Glycine max HOM05D000175 ORTHO05D004574 2.3e-35 151.8 79 86.1
Gohir.A11G110500 Gossypium hirsutum HOM05D000175 ORTHO05D004574 3.0e-35 151.4 79 87.3
Gohir.D11G115700 Gossypium hirsutum HOM05D000175 ORTHO05D004574 3.0e-35 151.4 79 87.3
arahy.Tifrunner.gnm1.ann1.EL2JAL Arachis hypogaea HOM05D000367 ORTHO05D004574 3.9e-35 151.0 79 88.6
Gohir.A11G110600 Gossypium hirsutum HOM05D000175 ORTHO05D004574 5.1e-35 150.6 79 87.3
Nitab4.5_0010861g0010 Nicotiana tabacum HOM05D000175 ORTHO05D004574 5.1e-35 150.6 79 86.1
Nitab4.5_0011161g0010 Nicotiana tabacum HOM05D000175 ORTHO05D004574 5.1e-35 150.6 79 86.1
TAR362G0675 Trochodendron aralioides HOM05D000175 ORTHO05D004574 6.6e-35 150.2 79 88.6
Gohir.D11G115600 Gossypium hirsutum HOM05D000175 ORTHO05D004574 8.6e-35 149.8 79 87.3
MD03G1297000 Malus domestica HOM05D000175 ORTHO05D004574 8.6e-35 149.8 80 85.0
MD11G1316600 Malus domestica HOM05D000175 ORTHO05D004574 8.6e-35 149.8 80 85.0
Oeu047381.1 Olea europaea HOM05D000175 ORTHO05D004574 8.6e-35 149.8 79 86.1
Thecc.01G310900 Theobroma cacao HOM05D000175 ORTHO05D004574 8.6e-35 149.8 77 88.3
ATR0706G028 Amborella trichopoda HOM05D000175 ORTHO05D004574 1.1e-34 149.4 77 87.0
Haze_05016 Corylus avellana HOM05D000175 ORTHO05D004574 1.1e-34 149.4 79 87.3
Atru.chr5.1042 Acer truncatum HOM05D000175 ORTHO05D004574 1.5e-34 149.1 79 87.3
arahy.Tifrunner.gnm1.ann1.LP608C Arachis hypogaea HOM05D000367 ORTHO05D004574 1.5e-34 149.1 80 88.8
arahy.Tifrunner.gnm1.ann1.LYW6AZ Arachis hypogaea HOM05D000175 ORTHO05D004574 1.5e-34 149.1 80 88.8
Duzib133G0406 Durio zibethinus HOM05D000175 ORTHO05D004574 1.9e-34 148.7 79 86.1
Cpa.g.sc18.17 Carica papaya HOM05D000175 ORTHO05D004574 9.5e-34 146.4 78 87.2
THA.LOC104802195 Tarenaya hassleriana HOM05D000175 ORTHO05D004574 9.5e-34 146.4 78 84.6
CiPaw.08G091300 Carya illinoinensis HOM05D000367 ORTHO05D004574 1.6e-33 145.6 77 87.0
Glyma.02G013800 Glycine max HOM05D000175 ORTHO05D004574 1.6e-33 145.6 77 87.0
Sabra02G0159600 Salix brachista HOM05D000175 ORTHO05D004574 1.6e-33 145.6 79 84.8
Glyma.19G215100 Glycine max HOM05D000175 ORTHO05D004574 2.1e-33 145.2 77 85.7
Gohir.D08G139500 Gossypium hirsutum HOM05D000367 ORTHO05D004574 2.1e-33 145.2 79 83.5
Gorai.004G143600 Gossypium raimondii HOM05D000175 ORTHO05D004574 2.1e-33 145.2 79 83.5
Cfa005825 Carpinus fangiana HOM05D000175 ORTHO05D004574 4.7e-33 144.1 79 83.5
CiPaw.07G115600 Carya illinoinensis HOM05D000175 ORTHO05D004574 4.7e-33 144.1 80 83.8
Potri.014G122600 Populus trichocarpa HOM05D000175 ORTHO05D004574 6.2e-33 143.7 79 83.5
THA.LOC104817464 Tarenaya hassleriana HOM05D000175 ORTHO05D004574 1.1e-32 142.9 78 80.8
Actinidia27608 Actinidia chinensis HOM05D000175 ORTHO05D004574 1.4e-32 142.5 77 84.4
Sed0022601 Sechium edule HOM05D000175 ORTHO05D004574 1.4e-32 142.5 80 85.0
Eucgr.K03532 Eucalyptus grandis HOM05D000175 ORTHO05D004574 1.8e-32 142.1 79 83.5
Manes.05G002100 Manihot esculenta HOM05D000175 ORTHO05D004574 2.4e-32 141.7 77 83.1
CAN.G1280.19 Capsicum annuum HOM05D000175 ORTHO05D004574 3.1e-32 141.4 80 82.5
FvH4_5g39520 Fragaria vesca HOM05D000175 ORTHO05D004574 3.1e-32 141.4 78 82.1
FAN08G1436 Fragaria x ananassa HOM05D000175 ORTHO05D004574 4.0e-32 141.0 78 80.8
Lalb_Chr04g0259911 Lupinus albus HOM05D000175 ORTHO05D004574 4.0e-32 141.0 80 85.0
Gohir.A08G118800 Gossypium hirsutum HOM05D000175 ORTHO05D004574 5.2e-32 140.6 79 83.5
Prupe.8G270200 Prunus persica HOM05D000175 ORTHO05D004574 5.2e-32 140.6 77 80.5
PGR044G2705 Punica granatum HOM05D000367 ORTHO05D004574 6.8e-32 140.2 79 83.5
COL.COLO4_23256 Corchorus olitorius HOM05D000175 ORTHO05D004574 8.9e-32 139.8 100 68.0
arahy.Tifrunner.gnm1.ann1.3B4RP4 Arachis hypogaea HOM05D000367 ORTHO05D004574 1.2e-31 139.4 98 71.4
FAN18G2485 Fragaria x ananassa HOM05D000175 ORTHO05D004574 1.5e-31 139.0 77 79.2
DCAR_005773 Daucus carota HOM05D000175 ORTHO05D004574 2.0e-31 138.7 80 77.5
RcHm_v2.0_Chr7g0241831 Rosa chinensis HOM05D000175 ORTHO05D004574 2.0e-31 138.7 78 82.1
FAN04G1179 Fragaria x ananassa HOM05D000175 ORTHO05D004574 2.6e-31 138.3 78 80.8
FAN13G0801 Fragaria x ananassa HOM05D000175 ORTHO05D004574 2.6e-31 138.3 78 80.8
Hund09616 Selenicereus undatus HOM05D000175 ORTHO05D004574 2.6e-31 138.3 80 78.8
QL12p029060 Quercus lobata HOM05D000175 ORTHO05D004574 4.4e-31 137.5 79 79.7
Ah.11g049380 Amaranthus hybridus HOM05D000175 ORTHO05D004574 5.8e-31 137.1 78 79.5
Manes.01G226300 Manihot esculenta HOM05D000175 ORTHO05D004574 5.8e-31 137.1 78 83.3
HPP92_002617 Vanilla planifolia HOM05D000175 ORTHO05D004574 5.8e-31 137.1 79 78.5
HPP92_002678 Vanilla planifolia HOM05D000175 ORTHO05D004574 5.8e-31 137.1 79 78.5
CSS0011534 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D004574 7.6e-31 136.7 77 80.5
HanXRQChr01g0000821 Helianthus annuus HOM05D000367 ORTHO05D004574 7.6e-31 136.7 78 80.8
Potri.002G198000 Populus trichocarpa HOM05D000175 ORTHO05D004574 7.6e-31 136.7 79 81.0
MSTRG.18113 Avicennia marina HOM05D000367 ORTHO05D004574 9.9e-31 136.3 79 81.0
Dinv33103 Davidia involucrata HOM05D000367 ORTHO05D004574 3.8e-30 134.4 66 93.9
GSVIVG01028094001 Vitis vinifera HOM05D000175 ORTHO05D004574 6.4e-30 133.7 66 93.9
CANSAT25G3589 Cannabis sativa HOM05D000175 ORTHO05D004574 8.4e-30 133.3 80 80.0
Lalb_Chr18g0046791 Lupinus albus HOM05D000175 ORTHO05D004574 1.9e-29 132.1 80 81.2
Actinidia25839 Actinidia chinensis HOM05D000175 ORTHO05D004574 2.4e-29 131.7 65 92.3
FAN18G3231 Fragaria x ananassa HOM05D000175 ORTHO05D004574 2.4e-29 131.7 77 77.9
Lj2A1203T19 Lonicera japonica HOM05D000175 ORTHO05D004574 2.4e-29 131.7 66 90.9
Peaxi162Scf00058g03014 Petunia axillaris HOM05D000175 ORTHO05D004574 3.2e-29 131.3 66 90.9
Rhsim01G0289700 Rhododendron simsii HOM05D000367 ORTHO05D004574 3.2e-29 131.3 66 89.4
Aqoxy2G02796 Aquilegia oxysepala HOM05D000175 ORTHO05D004574 4.1e-29 131.0 66 90.9
Lj1g0010215 Lotus japonicus HOM05D000175 ORTHO05D004574 4.1e-29 131.0 66 90.9
Sabra14G0091000 Salix brachista HOM05D000175 ORTHO05D004574 4.1e-29 131.0 79 77.2
CSS0008924 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D004574 7.1e-29 130.2 66 90.9
CSS0027615 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D004574 7.1e-29 130.2 66 90.9
ClCG09G005240 Citrullus lanatus HOM05D000175 ORTHO05D004574 7.1e-29 130.2 80 76.2
MELO3C015938.2 Cucumis melo HOM05D000367 ORTHO05D004574 7.1e-29 130.2 80 77.5
CsaV3_7G029830 Cucumis sativus L. HOM05D000175 ORTHO05D004574 7.1e-29 130.2 80 77.5
Psat3g020280 Pisum sativum HOM05D000175 ORTHO05D004574 7.1e-29 130.2 66 89.4
TPR.G20287 Trifolium pratense HOM05D000175 ORTHO05D004574 7.1e-29 130.2 66 89.4
ECA248G0565 Erigeron canadensis HOM05D000367 ORTHO05D004574 9.2e-29 129.8 66 90.9
Migut.D00096 Erythranthe guttata HOM05D000175 ORTHO05D004574 9.2e-29 129.8 66 89.4
HanXRQChr11g0329371 Helianthus annuus HOM05D000367 ORTHO05D004574 9.2e-29 129.8 66 89.4
Solyc01g079610.3 Solanum lycopersicum HOM05D000175 ORTHO05D004574 9.2e-29 129.8 66 87.9
Sopen01g031390 Solanum pennellii HOM05D000175 ORTHO05D004574 9.2e-29 129.8 66 87.9
Nitab4.5_0001301g0160 Nicotiana tabacum HOM05D000175 ORTHO05D004574 1.2e-28 129.4 80 78.8
Phvul.001G211800 Phaseolus vulgaris HOM05D000175 ORTHO05D004574 1.2e-28 129.4 66 90.9
TAR633G2011 Trochodendron aralioides HOM05D000367 ORTHO05D004574 1.2e-28 129.4 65 90.8
Lsat_1_v5_gn_5_191561 Lactuca sativa HOM05D000367 ORTHO05D004574 1.6e-28 129.0 66 87.9
PSO170G5121 Papaver somniferum HOM05D000175 ORTHO05D004574 1.6e-28 129.0 67 86.6
PSO210G3769 Papaver somniferum HOM05D000175 ORTHO05D004574 1.6e-28 129.0 66 89.4
PSO357G0591 Papaver somniferum HOM05D000175 ORTHO05D004574 1.6e-28 129.0 67 86.6
PSO761G0573 Papaver somniferum HOM05D000175 ORTHO05D004574 1.6e-28 129.0 66 89.4
PGSC0003DMG400009004 Solanum tuberosum HOM05D000175 ORTHO05D004574 1.6e-28 129.0 66 87.9
Medtr7g109340 Medicago truncatula HOM05D000175 ORTHO05D004574 2.1e-28 128.6 66 87.9
Nitab4.5_0000906g0010 Nicotiana tabacum HOM05D000175 ORTHO05D004574 2.1e-28 128.6 80 76.2
BcaB02g08110 Brassica carinata HOM05D000175 ORTHO05D004574 2.7e-28 128.3 65 89.2
Aa31LG10G16420 Aethionema arabicum HOM05D000175 ORTHO05D004574 3.5e-28 127.9 80 73.8
DCAR_002877 Daucus carota HOM05D000175 ORTHO05D004574 3.5e-28 127.9 66 87.9
MBI19_g37400_MAGBIO Magnolia biondii HOM05D000175 ORTHO05D004574 3.5e-28 127.9 65 89.2
AL5G45350 Arabidopsis lyrata HOM05D000175 ORTHO05D004574 4.6e-28 127.5 65 89.2
AT3G62600 Arabidopsis thaliana HOM05D000175 ORTHO05D004574 4.6e-28 127.5 65 89.2
Carub.0005s2926 Capsella rubella HOM05D000175 ORTHO05D004574 4.6e-28 127.5 65 89.2
CARHR172870 Cardamine hirsuta HOM05D000175 ORTHO05D004574 4.6e-28 127.5 65 89.2
Sp5g00900 Schrenkiella parvula HOM05D000175 ORTHO05D004574 4.6e-28 127.5 65 89.2
Ca_09201_v3 Cicer arietinum L. HOM05D000175 ORTHO05D004574 6.0e-28 127.1 66 87.9
Ca_30820_v3 Cicer arietinum L. HOM05D000175 ORTHO05D004574 6.0e-28 127.1 66 87.9
Thhalv10006078m.g Eutrema salsugineum HOM05D000175 ORTHO05D004574 6.0e-28 127.1 65 89.2
Zm00001eb345630 Zea mays HOM05D000367 ORTHO05D004574 6.0e-28 127.1 65 87.7
BcaC02g10299 Brassica carinata HOM05D000175 ORTHO05D004574 7.8e-28 126.7 65 87.7
A04p00600 Brassica napus HOM05D000175 ORTHO05D004574 7.8e-28 126.7 65 87.7
C04p30630 Brassica napus HOM05D000175 ORTHO05D004574 7.8e-28 126.7 65 87.7
BolC4t24588H Brassica oleracea HOM05D000175 ORTHO05D004574 7.8e-28 126.7 65 87.7
BraA04t15780Z Brassica rapa HOM05D000175 ORTHO05D004574 7.8e-28 126.7 65 87.7
HanXRQChr10g0285401 Helianthus annuus HOM05D000367 ORTHO05D004574 7.8e-28 126.7 66 86.4
VMungo1383G2171 Vigna mungo HOM05D000175 ORTHO05D004574 7.8e-28 126.7 65 89.2
Zm00001eb282660 Zea mays HOM05D000367 ORTHO05D004574 7.8e-28 126.7 66 84.8
BcaB02g07335 Brassica carinata HOM05D000175 ORTHO05D004574 1.7e-27 125.6 65 87.7
A07p26000 Brassica napus HOM05D000175 ORTHO05D004574 1.7e-27 125.6 65 87.7
C06p28290 Brassica napus HOM05D000175 ORTHO05D004574 1.7e-27 125.6 65 87.7
Sed0027598 Sechium edule HOM05D000175 ORTHO05D004574 2.3e-27 125.2 80 73.8
BcaC07g40735 Brassica carinata HOM05D000175 ORTHO05D004574 3.0e-27 124.8 65 87.7
A09p54470 Brassica napus HOM05D000175 ORTHO05D004574 3.0e-27 124.8 65 87.7
C08p37360 Brassica napus HOM05D000175 ORTHO05D004574 3.0e-27 124.8 65 87.7
BolC8t51314H Brassica oleracea HOM05D000175 ORTHO05D004574 3.0e-27 124.8 65 87.7
BraA09t40860Z Brassica rapa HOM05D000175 ORTHO05D004574 3.0e-27 124.8 65 87.7
SGA_v2.0_scaffold334G49057 Striga asiatica HOM05D000175 ORTHO05D004574 3.0e-27 124.8 65 87.7
unitig_85.g27179 Utricularia gibba HOM05D000175 ORTHO05D004574 6.6e-27 123.6 65 86.2
TWI36G0846 Tripterygium wilfordii HOM05D000175 ORTHO05D004574 8.7e-27 123.2 66 83.3
BcaC08g45205 Brassica carinata HOM05D000175 ORTHO05D004574 1.5e-26 122.5 65 86.2
BolC6t37999H Brassica oleracea HOM05D000175 ORTHO05D004574 1.5e-26 122.5 65 86.2
TWI18G0212 Tripterygium wilfordii HOM05D000175 ORTHO05D004574 2.5e-26 121.7 66 81.8
BraA07t30248Z Brassica rapa HOM05D000367 ORTHO05D004574 3.3e-26 121.3 65 84.6
Sc05g0000550 Simmondsia chinensis HOM05D000175 ORTHO05D004574 4.3e-26 120.9 65 83.1
AUR62024677 Chenopodium quinoa HOM05D000175 ORTHO05D004574 4.7e-25 117.5 66 78.8
AagrBONN_evm.TU.Sc2ySwM_228.5179 Anthoceros agrestis HOM05D000175 ORTHO05D004574 6.2e-25 117.1 87 63.2
EL10As5g23502 Beta vulgaris HOM05D000175 ORTHO05D004574 6.2e-25 117.1 65 81.5
SHI33201 Sapria himalayana HOM05D000175 ORTHO05D004574 6.2e-25 117.1 70 77.1
vmacro15121 Vaccinium macrocarpon HOM05D000175 ORTHO05D004574 8.1e-25 116.7 74 78.4
AUR62011835 Chenopodium quinoa HOM05D000175 ORTHO05D004574 1.1e-24 116.3 66 77.3
CDE02G0301 Ceratophyllum demersum HOM05D000175 ORTHO05D004574 9.0e-24 113.2 66 77.3
CDE09G1308 Ceratophyllum demersum HOM05D000175 ORTHO05D004574 1.2e-23 112.8 66 75.8
FAN18G2941 Fragaria x ananassa HOM05D000175 ORTHO05D004574 1.2e-23 112.8 93 58.1
Mapoly0115s0018 Marchantia polymorpha HOM05D000175 ORTHO05D004574 7.6e-23 110.2 76 64.5
CBR_g39261 Chara braunii HOM05D000175 ORTHO05D004574 1.3e-22 109.4 87 57.5
SMO165G0006 Selaginella moellendorffii HOM05D000175 ORTHO05D004574 8.4e-22 106.7 63 74.6
Zm00001eb340880 Zea mays HOM05D000175 ORTHO05D004574 3.2e-21 104.8 74 60.8
Actinidia12746 Actinidia chinensis HOM05D000367 ORTHO05D004574 7.1e-21 103.6 77 64.9
Pp3c12_8210 Physcomitrium patens HOM05D000175 ORTHO05D004574 2.7e-20 101.7 66 68.2
Pp3c4_21130 Physcomitrium patens HOM05D000175 ORTHO05D004574 1.7e-19 99.0 66 63.6
SGA_v2.0_scaffold376G50267 Striga asiatica HOM05D000175 ORTHO05D004574 8.7e-19 96.7 77 62.3
TAR371G0189 Trochodendron aralioides HOM05D066208 ORTHO05D051493 8.1e-17 90.1 41 95.1
MCO02G359 Micromonas commoda HOM05D000175 ORTHO05D004574 8.4e-14 80.1 75 44.0
PRCOL_00004895 Prasinoderma coloniale HOM05D000175 ORTHO05D004574 8.4e-14 80.1 79 44.3
MCO01G220 Micromonas commoda HOM05D000175 ORTHO05D004574 4.2e-13 77.8 76 43.4
Cre07.g320150 Chlamydomonas reinhardtii HOM05D000175 ORTHO05D004574 2.1e-09 65.5 58 48.3
Peaxi162Scf00001g02216 Petunia axillaris HOM05D000367 ORTHO05D004574 4.8e-09 64.3 28 96.4
SEGI_10547 Sequoiadendron giganteum HOM05D000175 ORTHO05D004574 6.4e-06 53.9 40 72.5


User provided reference genes

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