Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 5.2e-62 240.7 111 100.0
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.7e-28 129.4 92 73.9
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 6.7e-25 117.5 92 63.0
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 8.4e-20 100.5 85 61.2
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 1.9e-19 99.4 91 56.0
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 2.5e-19 99.0 83 61.4
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 7.1e-19 97.4 92 57.6
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 9.3e-19 97.1 80 61.2
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 9.3e-19 97.1 104 56.7
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 9.3e-19 97.1 90 57.8
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.2e-18 96.7 73 68.5
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 1.2e-18 96.7 92 56.5
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 4.6e-18 94.7 88 58.0
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 1.0e-17 93.6 89 55.1
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 1.3e-17 93.2 73 65.8
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 2.3e-17 92.4 72 63.9
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 2.3e-17 92.4 86 57.0
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 3.0e-17 92.0 90 57.8
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 3.9e-17 91.7 73 58.9
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 3.9e-17 91.7 81 61.7
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 3.9e-17 91.7 81 59.3
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 3.9e-17 91.7 93 57.0
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 5.1e-17 91.3 73 60.3
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 5.1e-17 91.3 76 61.8
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 5.1e-17 91.3 83 57.8
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 6.7e-17 90.9 82 58.5
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 6.7e-17 90.9 85 56.5
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 6.7e-17 90.9 73 64.4
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 6.7e-17 90.9 92 50.0
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 6.7e-17 90.9 92 52.2
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 8.7e-17 90.5 91 52.7
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 8.7e-17 90.5 83 55.4
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 8.7e-17 90.5 83 55.4
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 8.7e-17 90.5 86 57.0
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 1.1e-16 90.1 79 58.2
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 1.1e-16 90.1 91 51.6
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 1.5e-16 89.7 78 59.0
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 1.5e-16 89.7 92 55.4
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 1.5e-16 89.7 73 63.0
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 1.5e-16 89.7 73 63.0
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 1.9e-16 89.4 77 58.4
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 1.9e-16 89.4 91 52.7
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 1.9e-16 89.4 93 53.8
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 2.5e-16 89.0 86 54.7
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 2.5e-16 89.0 87 57.5
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 2.5e-16 89.0 73 63.0
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 3.3e-16 88.6 80 62.5
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 3.3e-16 88.6 83 55.4
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 4.3e-16 88.2 76 59.2
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 4.3e-16 88.2 73 63.0
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 4.3e-16 88.2 90 54.4
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 5.7e-16 87.8 73 61.6
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 7.4e-16 87.4 77 58.4
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 7.4e-16 87.4 73 60.3
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 9.7e-16 87.0 72 59.7
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 1.3e-15 86.7 83 56.6
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 1.3e-15 86.7 73 63.0
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.3e-15 86.7 73 61.6
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 1.3e-15 86.7 79 54.4
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 1.3e-15 86.7 73 60.3
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 1.6e-15 86.3 73 63.0
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 1.6e-15 86.3 83 56.6
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 1.6e-15 86.3 73 61.6
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 1.6e-15 86.3 73 61.6
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 1.6e-15 86.3 73 63.0
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 2.2e-15 85.9 73 61.6
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 2.8e-15 85.5 75 57.3
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 2.8e-15 85.5 83 56.6
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 6.3e-15 84.3 92 50.0
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 6.3e-15 84.3 94 53.2
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 8.2e-15 84.0 86 60.5
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 8.2e-15 84.0 80 55.0
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 8.2e-15 84.0 72 56.9
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 8.2e-15 84.0 80 57.5
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 8.2e-15 84.0 80 55.0
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 1.1e-14 83.6 77 53.2
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.1e-14 83.6 80 50.0
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 1.8e-14 82.8 73 58.9
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 1.8e-14 82.8 77 54.5
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 1.8e-14 82.8 73 57.5
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 3.1e-14 82.0 90 51.1
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 3.1e-14 82.0 84 54.8
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 4.1e-14 81.6 90 50.0
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 5.3e-14 81.3 77 57.1
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 6.9e-14 80.9 80 50.0
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 6.9e-14 80.9 73 58.9
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 9.0e-14 80.5 72 58.3
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 9.0e-14 80.5 85 48.2
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 1.2e-13 80.1 90 50.0
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 1.5e-13 79.7 81 53.1
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 2.0e-13 79.3 80 51.2
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 2.0e-13 79.3 80 52.5
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 2.6e-13 79.0 87 48.3
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 2.6e-13 79.0 81 50.6
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 2.6e-13 79.0 86 44.2
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 4.5e-13 78.2 73 54.8
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 4.5e-13 78.2 73 54.8
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 4.5e-13 78.2 73 54.8
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 5.9e-13 77.8 98 41.8
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 7.6e-13 77.4 81 51.9
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 7.6e-13 77.4 71 56.3
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 1.3e-12 76.6 92 51.1
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 1.7e-12 76.3 72 56.9
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 2.2e-12 75.9 61 67.2
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 2.2e-12 75.9 79 53.2
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 5.0e-12 74.7 107 40.2
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 8.5e-12 73.9 84 47.6
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.1e-11 73.6 80 48.8
Hma1.2p1_0718F.1_g208290 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.1e-11 73.6 32 96.9
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.4e-11 73.2 73 50.7
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 1.4e-11 73.2 73 53.4
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.9e-11 72.8 82 47.6
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 2.5e-11 72.4 60 58.3
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 3.2e-11 72.0 75 50.7
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 1.6e-10 69.7 86 52.3
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 1.6e-10 69.7 83 47.0
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 2.7e-10 68.9 83 48.2
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 2.7e-10 68.9 80 50.0
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 6.1e-10 67.8 73 49.3
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 3.9e-09 65.1 59 55.9
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 5.1e-09 64.7 78 47.4
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 2.5e-08 62.4 77 46.8
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 2.5e-08 62.4 59 54.2
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 3.3e-08 62.0 66 47.0
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 5.7e-08 61.2 70 50.0
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.3e-07 60.1 66 51.5
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 2.8e-07 58.9 59 52.5
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 3.7e-07 58.5 82 43.9
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 6.3e-07 57.8 78 39.7
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 6.3e-07 57.8 59 52.5
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 8.2e-07 57.4 59 50.8
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 8.2e-07 57.4 37 67.6
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 8.2e-07 57.4 58 51.7
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 8.2e-07 57.4 91 42.9
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 1.1e-06 57.0 59 47.5
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 4.1e-06 55.1 72 43.1
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 4.1e-06 55.1 59 49.2


User provided reference genes

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