Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0178F.1_g078980 Hydrangea macrophylla HOM05D004563 ORTHO05D002944 9.1e-78 293.5 148 100.0
TAR629G2655 Trochodendron aralioides HOM05D004563 ORTHO05D002944 3.1e-25 119.0 125 54.4
TAR626G0818 Trochodendron aralioides HOM05D008023 ORTHO05D002944 1.5e-24 116.7 126 48.4
CiPaw.04G131700 Carya illinoinensis HOM05D004563 ORTHO05D002944 4.4e-24 115.2 120 57.5
CSS0011468 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 7.5e-24 114.4 138 45.7
vmacro09223 Vaccinium macrocarpon HOM05D004563 ORTHO05D002944 1.7e-23 113.2 121 50.4
Actinidia10974 Actinidia chinensis HOM05D004563 ORTHO05D002944 2.2e-23 112.8 156 47.4
Prupe.3G122900 Prunus persica HOM05D004563 ORTHO05D002944 6.4e-23 111.3 158 46.8
Haze_13348 Corylus avellana HOM05D004563 ORTHO05D002944 4.6e-21 105.1 160 46.2
CSS0006802 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 1.1e-19 100.5 160 45.0
Atru.chr6.2814 Acer truncatum HOM05D004563 ORTHO05D002944 1.9e-19 99.8 120 47.5
Cc05_g08130 Coffea canephora HOM05D004563 ORTHO05D002944 2.5e-19 99.4 158 38.6
Rhsim04G0073900 Rhododendron simsii HOM05D004563 ORTHO05D002944 4.3e-19 98.6 145 41.4
Actinidia11133 Actinidia chinensis HOM05D004563 ORTHO05D002944 9.5e-19 97.4 155 44.5
GSVIVG01020684001 Vitis vinifera HOM05D004563 ORTHO05D002944 1.2e-18 97.1 122 44.3
QL08p041398 Quercus lobata HOM05D004563 ORTHO05D002944 1.6e-18 96.7 120 45.8
CANSAT64G2099 Cannabis sativa HOM05D004563 ORTHO05D002944 3.6e-18 95.5 133 45.9
Ciclev10015391m.g Citrus clementina HOM05D004563 ORTHO05D002944 1.1e-17 94.0 152 42.1
Oeu032703.1 Olea europaea HOM05D004563 ORTHO05D002944 6.8e-17 91.3 155 41.3
Oeu013689.1 Olea europaea HOM05D004563 ORTHO05D002944 1.2e-16 90.5 121 45.5
Nitab4.5_0003827g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 1.5e-16 90.1 113 45.1
PGSC0003DMG400020429 Solanum tuberosum HOM05D004563 ORTHO05D002944 5.8e-16 88.2 111 45.0
Dinv14970 Davidia involucrata HOM05D008023 ORTHO05D002944 7.5e-16 87.8 153 38.6
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 9.9e-16 87.4 137 40.9
TAR627G0246 Trochodendron aralioides HOM05D008023 ORTHO05D002944 1.3e-15 87.0 94 55.3
CAN.G456.28 Capsicum annuum HOM05D004563 ORTHO05D002944 1.7e-15 86.7 110 47.3
MD17G1232800 Malus domestica HOM05D004563 ORTHO05D002944 4.9e-15 85.1 149 38.3
Peaxi162Scf00384g00511 Petunia axillaris HOM05D004563 ORTHO05D002944 4.9e-15 85.1 116 44.0
TAR624G1329 Trochodendron aralioides HOM05D004563 ORTHO05D002944 4.9e-15 85.1 150 43.3
Potri.013G118000 Populus trichocarpa HOM05D004563 ORTHO05D002944 6.4e-15 84.7 156 39.7
Nitab4.5_0006772g0010 Nicotiana tabacum HOM05D004563 ORTHO05D002944 8.3e-15 84.3 158 34.8
Actinidia18792 Actinidia chinensis HOM05D008023 ORTHO05D002944 1.4e-14 83.6 113 43.4
Eucgr.A01904 Eucalyptus grandis HOM05D004563 ORTHO05D002944 1.4e-14 83.6 125 41.6
Solyc07g053320.4 Solanum lycopersicum HOM05D004563 ORTHO05D002944 1.9e-14 83.2 133 38.3
Peaxi162Scf00469g00139 Petunia axillaris HOM05D004563 ORTHO05D002944 3.2e-14 82.4 119 42.0
MD09G1239700 Malus domestica HOM05D004563 ORTHO05D002944 5.4e-14 81.6 150 42.0
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 7.1e-14 81.3 151 39.7
Sopen12g006190 Solanum pennellii HOM05D004563 ORTHO05D002944 7.1e-14 81.3 117 44.4
Atru.chr2.2242 Acer truncatum HOM05D008023 ORTHO05D002944 9.2e-14 80.9 107 42.1
Sopen07g027280 Solanum pennellii HOM05D004563 ORTHO05D002944 9.2e-14 80.9 133 37.6
Thecc.01G148500 Theobroma cacao HOM05D004563 ORTHO05D002944 9.2e-14 80.9 133 39.1
PSO541G0319 Papaver somniferum HOM05D004563 ORTHO05D002944 1.2e-13 80.5 117 43.6
Aqoxy1G03185 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 1.6e-13 80.1 126 42.1
Solyc12g010830.2 Solanum lycopersicum HOM05D004563 ORTHO05D002944 1.6e-13 80.1 114 43.9
Dinv15459 Davidia involucrata HOM05D004563 ORTHO05D002944 2.1e-13 79.7 107 53.3
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 3.5e-13 79.0 107 45.8
Actinidia35220 Actinidia chinensis HOM05D008023 ORTHO05D002944 4.6e-13 78.6 113 42.5
CAN.G318.9 Capsicum annuum HOM05D004563 ORTHO05D002944 7.8e-13 77.8 159 36.5
COL.COLO4_33545 Corchorus olitorius HOM05D004563 ORTHO05D002944 7.8e-13 77.8 121 37.2
Sabra13G0099900 Salix brachista HOM05D004563 ORTHO05D002944 7.8e-13 77.8 145 37.9
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 7.8e-13 77.8 107 41.1
CSS0011548 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 1.3e-12 77.0 130 40.8
HanXRQChr17g0557991 Helianthus annuus HOM05D004563 ORTHO05D002944 1.3e-12 77.0 153 39.2
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 1.7e-12 76.6 107 43.9
FvH4_6g27121 Fragaria vesca HOM05D004563 ORTHO05D002944 2.3e-12 76.3 121 43.8
PSO675G1487 Papaver somniferum HOM05D004563 ORTHO05D002944 2.3e-12 76.3 109 45.0
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 3.0e-12 75.9 107 41.1
FAN02G0553 Fragaria x ananassa HOM05D004563 ORTHO05D002944 3.0e-12 75.9 121 43.8
FAN09G1171 Fragaria x ananassa HOM05D004563 ORTHO05D002944 3.0e-12 75.9 121 43.8
FAN09G4605 Fragaria x ananassa HOM05D004563 ORTHO05D002944 3.9e-12 75.5 120 43.3
FAN14G3451 Fragaria x ananassa HOM05D004563 ORTHO05D002944 3.9e-12 75.5 121 43.0
Nitab4.5_0000537g0100 Nicotiana tabacum HOM05D004563 ORTHO05D002944 3.9e-12 75.5 179 33.5
Nitab4.5_0010797g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 5.1e-12 75.1 142 36.6
Duzib147G1211 Durio zibethinus HOM05D004563 ORTHO05D002944 6.6e-12 74.7 116 39.7
Manes.03G103000 Manihot esculenta HOM05D008023 ORTHO05D002944 6.6e-12 74.7 141 39.7
Cc05_g11360 Coffea canephora HOM05D008023 ORTHO05D002944 8.6e-12 74.3 114 43.9
Manes.15G092100 Manihot esculenta HOM05D008023 ORTHO05D002944 8.6e-12 74.3 149 35.6
Aqoxy4G00427 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 1.1e-11 73.9 123 43.1
Cpa.g.sc209.31 Carica papaya HOM05D004563 ORTHO05D002944 1.1e-11 73.9 157 33.8
Psat4g175400 Pisum sativum HOM05D008023 ORTHO05D002944 1.1e-11 73.9 100 45.0
CSS0035750 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 2.5e-11 72.8 113 45.1
Manes.13G138000 Manihot esculenta HOM05D004563 ORTHO05D002944 3.3e-11 72.4 116 40.5
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 7.3e-11 71.2 149 35.6
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 7.3e-11 71.2 98 49.0
TPR.G12029 Trifolium pratense HOM05D008023 ORTHO05D002944 9.5e-11 70.9 100 42.0
TWI59G1400 Tripterygium wilfordii HOM05D004563 ORTHO05D002944 9.5e-11 70.9 143 38.5
Cc01_g02410 Coffea canephora HOM05D008023 ORTHO05D002944 1.6e-10 70.1 115 40.0
Potri.019G089900 Populus trichocarpa HOM05D004563 ORTHO05D002944 1.6e-10 70.1 156 39.1
RcHm_v2.0_Chr2g0129081 Rosa chinensis HOM05D004563 ORTHO05D002944 1.6e-10 70.1 140 37.1
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 4.7e-10 68.6 138 35.5
Gohir.A10G031400 Gossypium hirsutum HOM05D004563 ORTHO05D002944 4.7e-10 68.6 110 38.2
Gorai.011G033900 Gossypium raimondii HOM05D004563 ORTHO05D002944 4.7e-10 68.6 110 38.2
Thecc.06G172300 Theobroma cacao HOM05D004563 ORTHO05D002944 4.7e-10 68.6 136 34.6
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 6.2e-10 68.2 128 37.5
Lalb_Chr19g0133891 Lupinus albus HOM05D008023 ORTHO05D002944 8.1e-10 67.8 145 35.9
Peaxi162Scf00069g02022 Petunia axillaris HOM05D018586 ORTHO05D002944 8.1e-10 67.8 110 41.8
CANSAT35G0556 Cannabis sativa HOM05D008023 ORTHO05D010897 1.1e-09 67.4 117 37.6
Duzib192G1010 Durio zibethinus HOM05D004563 ORTHO05D017903 1.8e-09 66.6 101 38.6
Gohir.D10G112200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 1.8e-09 66.6 109 40.4
Nitab4.5_0006539g0020 Nicotiana tabacum HOM05D018586 ORTHO05D002944 2.4e-09 66.2 109 43.1
CSS0039922 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 3.1e-09 65.9 137 37.2
Gorai.009G372300 Gossypium raimondii HOM05D008023 ORTHO05D002944 3.1e-09 65.9 128 35.9
Gohir.A10G153900 Gossypium hirsutum HOM05D004563 ORTHO05D002944 4.0e-09 65.5 113 38.1
Gohir.D10G032200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 4.0e-09 65.5 110 37.3
MD10G1281200 Malus domestica HOM05D016724 ORTHO05D017903 4.0e-09 65.5 116 30.2
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 5.2e-09 65.1 116 37.9
FAN21G3564 Fragaria x ananassa HOM05D008023 ORTHO05D002944 5.2e-09 65.1 145 33.8
Gorai.011G124100 Gossypium raimondii HOM05D004563 ORTHO05D002944 5.2e-09 65.1 109 39.4
SalBow7G0314 Salvia bowleyana HOM05D004563 ORTHO05D002944 5.2e-09 65.1 118 37.3
ClCG11G017550 Citrullus lanatus HOM05D008023 ORTHO05D002944 6.8e-09 64.7 112 40.2
PGR042G0272 Punica granatum HOM05D004563 ORTHO05D002944 6.8e-09 64.7 100 41.0
vmacro09501 Vaccinium macrocarpon HOM05D008023 ORTHO05D002944 6.8e-09 64.7 143 35.0
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 8.9e-09 64.3 127 36.2
FvH4_3g18640 Fragaria vesca HOM05D008023 ORTHO05D002944 1.2e-08 63.9 145 32.4
FAN11G0626 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.2e-08 63.9 145 32.4
FAN16G2995 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.2e-08 63.9 145 32.4
VMungo1127G0722 Vigna mungo HOM05D008023 ORTHO05D002944 1.2e-08 63.9 97 43.3
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 1.5e-08 63.5 110 37.3
Lj3g0002978 Lotus japonicus HOM05D008023 ORTHO05D002944 1.5e-08 63.5 147 36.1
RcHm_v2.0_Chr5g0031461 Rosa chinensis HOM05D008023 ORTHO05D002944 1.5e-08 63.5 115 37.4
FvH4_3g07930 Fragaria vesca HOM05D016724 ORTHO05D017903 2.0e-08 63.2 129 31.8
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 2.6e-08 62.8 82 40.2
MELO3C025631.2 Cucumis melo HOM05D008023 ORTHO05D002944 3.4e-08 62.4 113 38.9
Phvul.005G096100 Phaseolus vulgaris HOM05D004563 ORTHO05D002944 3.4e-08 62.4 121 37.2
Gohir.D05G344300 Gossypium hirsutum HOM05D008023 ORTHO05D002944 4.4e-08 62.0 128 35.2
Phvul.011G159200 Phaseolus vulgaris HOM05D008023 ORTHO05D002944 4.4e-08 62.0 158 34.8
FAN11G3468 Fragaria x ananassa HOM05D016724 ORTHO05D017903 5.8e-08 61.6 130 30.8
FAN16G0791 Fragaria x ananassa HOM05D016724 ORTHO05D017903 5.8e-08 61.6 130 30.8
FAN25G1709 Fragaria x ananassa HOM05D008023 ORTHO05D002944 5.8e-08 61.6 145 32.4
MSTRG.14316 Avicennia marina HOM05D004563 ORTHO05D002944 7.6e-08 61.2 131 34.4
Glyma.13G291600 Glycine max HOM05D004563 ORTHO05D002944 7.6e-08 61.2 114 40.4
FAN25G1620 Fragaria x ananassa HOM05D016724 ORTHO05D017903 9.9e-08 60.8 130 32.3
Rhsim04G0024700 Rhododendron simsii HOM05D008023 ORTHO05D002944 1.3e-07 60.5 118 38.1
RcHm_v2.0_Chr5g0010561 Rosa chinensis HOM05D016724 ORTHO05D017903 1.3e-07 60.5 142 32.4
Ca_23071_v3 Cicer arietinum L. HOM05D008023 ORTHO05D002944 1.7e-07 60.1 92 45.7
FAN21G3782 Fragaria x ananassa HOM05D016724 ORTHO05D017903 2.9e-07 59.3 130 30.0
SalBow7G0936 Salvia bowleyana HOM05D004563 ORTHO05D002944 2.9e-07 59.3 143 31.5
CAN.G162.20 Capsicum annuum HOM05D018586 ORTHO05D002944 3.8e-07 58.9 155 34.8
Eucgr.L01514 Eucalyptus grandis HOM05D008023 ORTHO05D010897 3.8e-07 58.9 98 35.7
Gohir.A04G038800 Gossypium hirsutum HOM05D008023 ORTHO05D002944 3.8e-07 58.9 127 34.6
TWI39G0037 Tripterygium wilfordii HOM05D008023 ORTHO05D002944 3.8e-07 58.9 142 35.9
DCAR_013145 Daucus carota HOM05D008023 ORTHO05D002944 4.9e-07 58.5 115 37.4
Migut.M00253 Erythranthe guttata HOM05D004563 ORTHO05D002944 4.9e-07 58.5 168 29.2
Gohir.A11G287000 Gossypium hirsutum HOM05D008023 ORTHO05D002944 6.4e-07 58.2 114 36.8
VMungo1080G1187 Vigna mungo HOM05D002364 ORTHO05D002540 6.4e-07 58.2 122 40.2
Cpa.g.sc131.62 Carica papaya HOM05D008023 ORTHO05D002944 8.4e-07 57.8 117 36.8
CsaV3_4G033230 Cucumis sativus L. HOM05D008023 ORTHO05D010897 8.4e-07 57.8 116 37.9
MD03G1240400 Malus domestica HOM05D008023 ORTHO05D002944 8.4e-07 57.8 128 34.4
Medtr4g079720 Medicago truncatula HOM05D004563 ORTHO05D002944 8.4e-07 57.8 100 38.0
Eucgr.F01214 Eucalyptus grandis HOM05D008023 ORTHO05D010897 1.1e-06 57.4 136 29.4
Lsat_1_v5_gn_9_99560 Lactuca sativa HOM05D029722 ORTHO05D002944 1.1e-06 57.4 108 36.1
Actinidia16803 Actinidia chinensis HOM05D014353 ORTHO05D002944 1.9e-06 56.6 116 34.5
FvH4_3g25880 Fragaria vesca HOM05D008023 ORTHO05D010897 1.9e-06 56.6 116 35.3
Nitab4.5_0000246g0140 Nicotiana tabacum HOM05D018586 ORTHO05D002944 1.9e-06 56.6 109 40.4
Sabra16G0248200 Salix brachista HOM05D008023 ORTHO05D002944 1.9e-06 56.6 144 35.4
VMungo1127G1865 Vigna mungo HOM05D004563 ORTHO05D002944 1.9e-06 56.6 168 29.8
Phvul.011G134500 Phaseolus vulgaris HOM05D004563 ORTHO05D002944 2.4e-06 56.2 99 40.4
Glyma.12G209700 Glycine max HOM05D004563 ORTHO05D002944 3.2e-06 55.8 117 39.3
Hund07832 Selenicereus undatus HOM05D004563 ORTHO05D002944 3.2e-06 55.8 149 32.9
Medtr8g463800 Medicago truncatula HOM05D008023 ORTHO05D002944 9.2e-06 54.3 148 30.4


User provided reference genes

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