Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0178F.1_g078280 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 2.4e-66 255.4 130 100.0
Hma1.2p1_0178F.1_g078313 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 2.4e-66 255.4 130 100.0
Hma1.2p1_0170F.1_g075030 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 2.2e-51 205.7 165 68.5
Hma1.2p1_0293F.1_g116340 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 9.2e-34 147.1 160 57.5
Hma1.2p1_0129F.1_g060190 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 3.0e-24 115.5 78 78.2
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 6.6e-24 114.4 61 93.4
Hma1.2p1_0400F.1_g144500 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 8.6e-24 114.0 100 63.0
Hma1.2p1_0375F.1_g139000 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 4.3e-23 111.7 78 75.6
Hma1.2p1_0419F.1_g149380 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 3.6e-22 108.6 78 74.4
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 1.6e-14 83.2 81 51.9
Lj6P690T34 Lonicera japonica HOM05D005742 ORTHO05D001888 3.6e-14 82.0 59 64.4
CSS0018184 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 1.1e-13 80.5 59 67.8
CSS0026509 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 1.1e-13 80.5 59 67.8
Dinv44293 Davidia involucrata HOM05D005742 ORTHO05D001888 2.0e-12 76.3 97 48.5
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 2.6e-12 75.9 60 65.0
Actinidia18454 Actinidia chinensis HOM05D005742 ORTHO05D001888 1.3e-11 73.6 60 61.7
Actinidia40376 Actinidia chinensis HOM05D005742 ORTHO05D001888 1.3e-11 73.6 60 61.7
vmacro08056 Vaccinium macrocarpon HOM05D001258 ORTHO05D000158 1.7e-11 73.2 58 65.5
Actinidia13362 Actinidia chinensis HOM05D005742 ORTHO05D001888 3.8e-11 72.0 73 50.7
DCAR_027000 Daucus carota HOM05D005742 ORTHO05D001888 3.8e-11 72.0 57 57.9
Actinidia06790 Actinidia chinensis HOM05D005742 ORTHO05D001888 4.9e-11 71.6 60 58.3
DCAR_023352 Daucus carota HOM05D005742 ORTHO05D001888 1.4e-10 70.1 58 53.4
Oeu032017.1 Olea europaea HOM05D005742 ORTHO05D001888 1.9e-10 69.7 61 59.0
CiPaw.02G075500 Carya illinoinensis HOM05D005742 ORTHO05D001888 2.4e-10 69.3 66 54.5
Ciclev10007183m.g Citrus clementina HOM05D005742 ORTHO05D001888 2.4e-10 69.3 118 34.7
Cc03_g00920 Coffea canephora HOM05D005742 ORTHO05D001888 2.4e-10 69.3 61 57.4
Prupe.1G118800 Prunus persica HOM05D005742 ORTHO05D001888 2.4e-10 69.3 60 56.7
Oeu003757.1 Olea europaea HOM05D005742 ORTHO05D001888 3.2e-10 68.9 61 57.4
SGA_v2.0_scaffold104G30095 Striga asiatica HOM05D005742 ORTHO05D001888 3.2e-10 68.9 62 58.1
Actinidia15607 Actinidia chinensis HOM05D005742 ORTHO05D001888 4.2e-10 68.6 60 56.7
Ah.04g157100 Amaranthus hybridus HOM05D005742 ORTHO05D001888 9.3e-10 67.4 83 45.8
Rhsim02G0004500 Rhododendron simsii HOM05D005742 ORTHO05D001888 1.2e-09 67.0 61 63.9
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 1.6e-09 66.6 63 50.8
MSTRG.24819 Avicennia marina HOM05D005742 ORTHO05D001888 2.1e-09 66.2 60 55.0
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 3.5e-09 65.5 124 36.3
unitig_0.g2583 Utricularia gibba HOM05D005742 ORTHO05D001888 4.6e-09 65.1 62 51.6
MD16G1155100 Malus domestica HOM05D005742 ORTHO05D001888 6.0e-09 64.7 92 43.5
CANSAT78G0521 Cannabis sativa HOM05D005742 ORTHO05D001888 7.8e-09 64.3 81 42.0
TWI09G1381 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 1.0e-08 63.9 56 50.0
TWI53G1179 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 1.0e-08 63.9 57 52.6
Nn4g25584 Nelumbo nucifera HOM05D005742 ORTHO05D001888 1.3e-08 63.5 64 46.9
RcHm_v2.0_Chr4g0424831 Rosa chinensis HOM05D005742 ORTHO05D001888 1.3e-08 63.5 60 50.0
SGA_v2.0_scaffold473G52104 Striga asiatica HOM05D005742 ORTHO05D001888 1.7e-08 63.2 58 56.9
Migut.G00051 Erythranthe guttata HOM05D005742 ORTHO05D001888 2.3e-08 62.8 62 50.0
PGR031G3690 Punica granatum HOM05D005742 ORTHO05D001888 3.0e-08 62.4 102 36.3
Solyc01g059940.2 Solanum lycopersicum HOM05D005742 ORTHO05D001888 3.0e-08 62.4 57 52.6
Sopen01g026080 Solanum pennellii HOM05D005742 ORTHO05D001888 3.0e-08 62.4 57 52.6
PGSC0003DMG400021845 Solanum tuberosum HOM05D005742 ORTHO05D001888 3.0e-08 62.4 57 52.6
Cpa.g.sc9.68 Carica papaya HOM05D005742 ORTHO05D001888 3.9e-08 62.0 61 47.5
vmacro15186 Vaccinium macrocarpon HOM05D005742 ORTHO05D001888 3.9e-08 62.0 61 57.4
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 5.1e-08 61.6 74 44.6
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 5.1e-08 61.6 82 41.5
CAN.G244.7 Capsicum annuum HOM05D005742 ORTHO05D001888 8.7e-08 60.8 57 50.9
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 1.1e-07 60.5 124 34.7
MSTRG.3861 Avicennia marina HOM05D005742 ORTHO05D001888 1.1e-07 60.5 60 50.0
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 1.1e-07 60.5 127 34.6
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 1.9e-07 59.7 124 35.5
MSTRG.21772 Avicennia marina HOM05D005742 ORTHO05D001888 1.9e-07 59.7 60 51.7
ATR0796G165 Amborella trichopoda HOM05D005742 ORTHO05D001888 3.3e-07 58.9 82 37.8
Lsat_1_v5_gn_1_41021 Lactuca sativa HOM05D005742 ORTHO05D001888 3.3e-07 58.9 61 45.9
MBI19_g03227_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 4.3e-07 58.5 97 36.1
FAN07G2165 Fragaria x ananassa HOM05D005742 ORTHO05D001888 5.6e-07 58.2 60 46.7
Nitab4.5_0000169g0180 Nicotiana tabacum HOM05D005742 ORTHO05D001888 5.6e-07 58.2 59 52.5
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 9.6e-07 57.4 124 34.7
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 9.6e-07 57.4 124 34.7
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 1.6e-06 56.6 124 33.9
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 1.6e-06 56.6 124 33.9
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 1.6e-06 56.6 61 47.5
Dinv15186 Davidia involucrata HOM05D001340 ORTHO05D002318 2.1e-06 56.2 77 45.5
Carub.0003s0619 Capsella rubella HOM05D005742 ORTHO05D001888 2.8e-06 55.8 55 49.1
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 2.8e-06 55.8 61 45.9
Nitab4.5_0002218g0040 Nicotiana tabacum HOM05D005742 ORTHO05D001888 3.6e-06 55.5 59 50.8
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 3.6e-06 55.5 106 34.0
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 8.1e-06 54.3 61 44.3


User provided reference genes

Program Settings