Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 6.5e-57 223.8 109 100.0
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 6.5e-57 223.8 109 100.0
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.4e-51 206.1 107 91.6
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.9e-49 198.4 106 91.5
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 8.5e-49 196.8 107 89.7
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.1e-48 196.4 106 88.7
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.1e-48 196.4 107 89.7
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 1.4e-48 196.1 107 86.0
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.9e-48 195.7 107 88.8
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 1.9e-48 195.7 107 86.9
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 4.2e-48 194.5 107 86.9
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 7.2e-48 193.7 107 86.0
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 1.6e-47 192.6 107 85.0
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 2.1e-47 192.2 103 90.3
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 2.1e-47 192.2 104 88.5
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 8.0e-47 190.3 103 88.3
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 1.0e-46 189.9 107 86.0
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.0e-46 189.9 108 85.2
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 1.8e-46 189.1 104 86.5
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 1.8e-46 189.1 104 86.5
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 2.3e-46 188.7 104 88.5
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 3.0e-46 188.3 107 83.2
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 3.0e-46 188.3 108 85.2
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 3.0e-46 188.3 107 85.0
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 3.9e-46 188.0 107 84.1
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 5.2e-46 187.6 104 85.6
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 5.2e-46 187.6 104 85.6
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 6.7e-46 187.2 107 86.0
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 8.8e-46 186.8 106 86.8
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 8.8e-46 186.8 106 84.9
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 1.1e-45 186.4 109 81.7
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 1.1e-45 186.4 107 84.1
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 1.1e-45 186.4 106 84.9
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 1.5e-45 186.0 109 81.7
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 2.0e-45 185.7 107 85.0
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 2.6e-45 185.3 106 83.0
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 3.3e-45 184.9 107 83.2
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 3.3e-45 184.9 103 83.5
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 4.4e-45 184.5 107 82.2
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 4.4e-45 184.5 107 82.2
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 4.4e-45 184.5 106 81.1
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 7.4e-45 183.7 107 84.1
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 9.7e-45 183.3 107 82.2
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 9.7e-45 183.3 106 84.0
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 9.7e-45 183.3 107 82.2
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 1.3e-44 183.0 106 80.2
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.7e-44 182.6 106 81.1
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 2.2e-44 182.2 104 83.7
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 2.2e-44 182.2 106 83.0
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 2.2e-44 182.2 107 84.1
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 2.8e-44 181.8 107 81.3
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 2.8e-44 181.8 107 80.4
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 3.7e-44 181.4 106 79.2
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 3.7e-44 181.4 107 81.3
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.7e-44 181.4 107 81.3
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.7e-44 181.4 107 81.3
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.7e-44 181.4 107 81.3
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 3.7e-44 181.4 107 81.3
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 6.3e-44 180.6 107 79.4
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 8.2e-44 180.3 105 80.0
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 8.2e-44 180.3 107 81.3
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.1e-43 179.9 103 82.5
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 1.1e-43 179.9 100 83.0
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 1.1e-43 179.9 106 82.1
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.4e-43 179.5 106 80.2
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 1.4e-43 179.5 107 83.2
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 1.8e-43 179.1 107 82.2
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 1.8e-43 179.1 107 82.2
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.8e-43 179.1 107 81.3
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 2.4e-43 178.7 108 79.6
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 2.4e-43 178.7 99 84.8
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 2.4e-43 178.7 106 79.2
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 2.4e-43 178.7 106 78.3
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 2.4e-43 178.7 101 82.2
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 3.1e-43 178.3 106 81.1
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 4.1e-43 177.9 106 78.3
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 4.1e-43 177.9 108 78.7
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 4.1e-43 177.9 105 79.0
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 4.1e-43 177.9 106 79.2
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 7.0e-43 177.2 107 80.4
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 7.0e-43 177.2 105 78.1
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 9.1e-43 176.8 100 83.0
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 1.6e-42 176.0 107 76.6
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 1.6e-42 176.0 105 77.1
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.6e-42 175.3 106 78.3
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 2.6e-42 175.3 98 86.7
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 4.5e-42 174.5 107 77.6
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 1.0e-41 173.3 107 75.7
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 1.0e-41 173.3 107 76.6
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 1.0e-41 173.3 98 86.7
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 1.3e-41 172.9 107 77.6
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.7e-41 172.6 107 75.7
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 1.7e-41 172.6 107 76.6
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 2.9e-41 171.8 95 88.4
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 2.9e-41 171.8 108 78.7
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 2.9e-41 171.8 107 78.5
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 3.8e-41 171.4 99 82.8
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 6.5e-41 170.6 107 74.8
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 1.1e-40 169.9 107 75.7
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.5e-40 169.5 107 74.8
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 4.2e-40 167.9 107 75.7
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 5.5e-40 167.5 104 76.0
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 2.1e-39 165.6 99 79.8
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 2.1e-39 165.6 104 75.0
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 6.1e-39 164.1 106 74.5
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 1.8e-38 162.5 107 74.8
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 1.2e-37 159.8 110 71.8
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 1.5e-37 159.5 98 77.6
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.5e-37 159.5 106 72.6
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 2.0e-37 159.1 107 72.0
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 2.6e-37 158.7 100 79.0
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.2e-36 155.6 107 76.6
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 4.1e-35 151.4 107 66.4
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 4.1e-35 151.4 98 73.5
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 1.2e-34 149.8 107 65.4
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 1.0e-33 146.7 107 65.4
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 1.3e-33 146.4 107 63.6
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 1.7e-33 146.0 107 65.4
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 1.7e-33 146.0 107 65.4
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 2.9e-33 145.2 107 63.6
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 5.0e-33 144.4 105 64.8
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 5.0e-33 144.4 107 64.5
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 5.0e-33 144.4 107 64.5
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 8.5e-33 143.7 107 63.6
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 8.5e-33 143.7 107 65.4
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 1.1e-32 143.3 107 62.6
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 1.9e-32 142.5 107 63.6
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 1.2e-31 139.8 108 63.9
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 1.2e-31 139.8 108 63.9
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 1.2e-31 139.8 108 63.9
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 1.2e-31 139.8 108 63.9
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 1.6e-31 139.4 84 78.6
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 3.6e-31 138.3 107 62.6
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 3.6e-31 138.3 99 67.7
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 3.0e-30 135.2 102 60.8
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 6.8e-30 134.0 107 64.5
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 2.6e-29 132.1 99 64.6
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 5.7e-29 131.0 92 73.9
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 3.7e-28 128.3 66 89.4
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 6.3e-28 127.5 91 69.2
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 1.2e-26 123.2 98 59.2
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.6e-26 122.9 66 86.4
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 2.9e-25 118.6 81 67.9
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 9.5e-24 113.6 75 77.3
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 3.6e-23 111.7 96 59.4
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 8.0e-23 110.5 96 59.4
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 2.3e-22 109.0 97 58.8
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 3.0e-22 108.6 91 60.4
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 5.2e-22 107.8 93 59.1
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 1.3e-20 103.2 87 56.3
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 4.1e-19 98.2 57 84.2
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 7.0e-19 97.4 56 78.6
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 1.6e-18 96.3 87 54.0
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.7e-18 95.5 58 81.0
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 3.5e-18 95.1 79 62.0
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 7.8e-18 94.0 56 82.1
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 2.3e-17 92.4 57 78.9
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 2.8e-15 85.5 107 45.8
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 1.3e-12 76.6 86 47.7
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 1.9e-11 72.8 44 81.8
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 1.6e-07 59.7 95 42.1


User provided reference genes

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