Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 4.0e-179 631.3 325 100.0
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 6.1e-127 458.0 336 73.8
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 2.4e-115 419.5 331 68.0
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 5.0e-113 411.8 337 66.5
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 3.7e-108 395.6 336 65.5
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 1.5e-93 347.1 339 60.5
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 2.0e-93 346.7 340 58.5
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 1.2e-90 337.4 423 50.8
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 5.0e-89 332.0 333 59.5
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 7.3e-88 328.2 335 56.7
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 1.2e-87 327.4 353 56.4
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 2.1e-87 326.6 223 76.7
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.8e-86 323.6 337 54.9
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 2.2e-84 316.6 343 54.5
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 2.9e-84 316.2 338 54.4
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 6.4e-84 315.1 341 56.0
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.1e-83 314.3 337 52.8
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 1.4e-83 313.9 336 54.8
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 2.7e-82 309.7 336 54.5
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 4.6e-82 308.9 336 54.2
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 6.0e-82 308.5 335 53.4
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.3e-81 307.4 337 52.5
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 8.6e-81 304.7 348 54.0
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 8.6e-81 304.7 356 52.8
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 1.1e-80 304.3 317 59.3
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 2.5e-80 303.1 338 53.6
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 5.6e-80 302.0 341 54.3
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 4.7e-79 298.9 330 53.3
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 3.1e-78 296.2 310 57.7
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 6.8e-78 295.0 338 53.6
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.2e-77 294.3 337 51.9
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 4.9e-76 288.9 340 54.1
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 4.9e-76 288.9 307 56.7
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 3.2e-75 286.2 311 53.1
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 5.4e-75 285.4 343 51.6
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 9.2e-75 284.6 338 53.8
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 4.6e-74 282.3 338 53.6
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.0e-73 281.2 341 51.6
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 1.7e-73 280.4 333 51.4
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 1.7e-73 280.4 270 58.1
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 8.6e-73 278.1 335 50.7
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 9.6e-72 274.6 336 50.3
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 1.6e-71 273.9 302 55.6
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 1.4e-70 270.8 333 49.8
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 2.4e-70 270.0 337 51.6
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 4.0e-70 269.2 269 56.1
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 2.0e-69 266.9 298 55.0
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 9.9e-69 264.6 248 58.5
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 3.8e-68 262.7 337 50.1
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 4.6e-66 255.8 359 49.0
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 6.6e-65 251.9 355 49.0
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 1.5e-64 250.8 276 55.4
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 1.6e-63 247.3 346 47.4
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 1.8e-62 243.8 266 56.8
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 4.0e-62 242.7 331 50.2
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.2e-60 236.9 271 52.4
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 9.6e-56 221.5 302 46.0
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 9.6e-56 221.5 309 47.6
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 8.1e-55 218.4 329 48.3
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 8.1e-55 218.4 331 45.0
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 1.5e-53 214.2 341 45.7
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 2.6e-53 213.4 331 44.4
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 7.6e-53 211.8 303 46.9
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 1.3e-52 211.1 338 44.7
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 2.9e-52 209.9 249 49.4
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 3.8e-52 209.5 308 45.1
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 1.4e-51 207.6 360 43.1
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 1.9e-51 207.2 301 46.5
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 1.9e-51 207.2 308 44.8
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 2.4e-51 206.8 334 44.6
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 3.2e-51 206.5 339 44.5
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 5.5e-51 205.7 232 53.9
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.6e-50 204.1 335 42.4
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 2.7e-50 203.4 334 42.2
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 6.0e-50 202.2 347 41.2
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 7.9e-50 201.8 318 44.7
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 3.9e-49 199.5 310 42.9
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 8.7e-49 198.4 211 54.0
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 1.5e-48 197.6 276 46.4
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 1.9e-48 197.2 307 45.3
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 2.5e-48 196.8 307 47.9
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 7.4e-48 195.3 308 47.7
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 3.7e-47 193.0 334 42.2
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 6.2e-47 192.2 263 46.8
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 1.1e-46 191.4 298 42.6
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 1.8e-46 190.7 302 44.7
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 1.8e-46 190.7 317 41.6
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 4.0e-46 189.5 322 42.9
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 4.0e-46 189.5 209 52.2
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 4.5e-45 186.0 347 40.1
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 4.5e-45 186.0 302 44.4
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 4.5e-45 186.0 319 44.8
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 5.8e-45 185.7 303 43.2
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.3e-44 184.5 263 45.6
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.3e-44 184.5 341 41.9
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 4.9e-44 182.6 326 42.3
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 6.5e-44 182.2 340 41.2
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 1.4e-43 181.0 321 40.2
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 3.2e-43 179.9 317 42.0
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 4.2e-43 179.5 309 43.7
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 4.2e-43 179.5 262 47.3
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 7.1e-43 178.7 321 39.9
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 9.3e-43 178.3 327 43.4
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 9.3e-43 178.3 336 38.7
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 1.2e-42 177.9 303 43.2
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 3.5e-42 176.4 312 42.0
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 3.5e-42 176.4 325 43.1
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 3.5e-42 176.4 315 41.9
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 1.0e-41 174.9 300 43.0
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 1.0e-41 174.9 307 42.7
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 1.8e-41 174.1 325 42.8
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 2.3e-41 173.7 323 41.5
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 2.3e-41 173.7 336 39.0
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 3.0e-41 173.3 312 42.9
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 3.0e-41 173.3 264 45.5
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 1.9e-40 170.6 278 42.4
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 5.7e-40 169.1 335 39.1
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 5.7e-40 169.1 276 42.4
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 7.4e-40 168.7 284 43.0
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 7.4e-40 168.7 336 39.0
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 1.3e-39 167.9 331 38.4
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 1.6e-39 167.5 306 41.5
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 1.6e-39 167.5 331 40.5
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 2.1e-39 167.2 285 40.4
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 3.7e-39 166.4 330 38.2
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 1.8e-38 164.1 353 40.2
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 1.8e-38 164.1 226 45.6
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 2.4e-38 163.7 326 39.6
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 5.3e-38 162.5 332 37.7
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 5.3e-38 162.5 315 38.1
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 7.6e-37 158.7 209 46.4
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 7.6e-37 158.7 313 40.6
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 3.8e-36 156.4 186 50.0
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.8e-36 156.4 350 37.4
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 8.5e-36 155.2 349 38.1
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 8.5e-36 155.2 300 42.0
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 1.1e-35 154.8 313 37.4
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.9e-35 154.1 350 37.7
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 3.6e-34 149.8 257 41.6
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 4.6e-34 149.4 294 38.1
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 1.8e-30 137.5 317 36.6
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 1.5e-29 134.4 297 36.4
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 2.0e-29 134.0 145 55.2
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 1.4e-27 127.9 233 40.8
COL.COLO4_09196 Corchorus olitorius HOM05D004643 ORTHO05D005535 4.8e-23 112.8 168 45.8
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 5.3e-22 109.4 102 58.8
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 5.9e-21 105.9 239 35.1
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 7.7e-21 105.5 272 34.2
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 6.5e-20 102.4 121 52.9
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 1.9e-19 100.9 204 40.2
CSS0034684 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 3.2e-19 100.1 101 56.4
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 9.4e-19 98.6 156 39.7
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 6.1e-18 95.9 294 32.3
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 3.9e-17 93.2 241 32.0
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 1.1e-16 91.7 214 36.0
COL.COLO4_09197 Corchorus olitorius HOM05D004643 ORTHO05D005535 6.3e-15 85.9 105 52.4
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 2.6e-13 80.5 64 57.8
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 2.1e-10 70.9 95 42.1
Lsat_1_v5_gn_8_161541 Lactuca sativa HOM05D004643 ORTHO05D005535 2.1e-10 70.9 95 42.1
Pp3c16_13490 Physcomitrium patens HOM05D002346 ORTHO05D002452 5.7e-08 62.8 181 32.0
Glyma.09G071600 Glycine max HOM05D001047 ORTHO05D000768 9.7e-08 62.0 131 35.1
SEGI_39984 Sequoiadendron giganteum HOM05D002346 ORTHO05D002452 1.7e-07 61.2 197 30.5
Mapoly0097s0021 Marchantia polymorpha HOM05D002346 ORTHO05D002452 3.7e-07 60.1 216 31.0
CSS0031905 Camellia sinensis var. sinensis HOM05D001047 ORTHO05D000768 1.1e-06 58.5 185 30.3
Os07g0615200 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 1.1e-06 58.5 170 28.8
Glyma.15G179600 Glycine max HOM05D001047 ORTHO05D000768 1.4e-06 58.2 121 37.2
Zm00001eb327450 Zea mays HOM05D001047 ORTHO05D000768 1.4e-06 58.2 155 31.6
COL.COLO4_18064 Corchorus olitorius HOM05D001047 ORTHO05D000768 1.8e-06 57.8 142 35.2
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 2.4e-06 57.4 83 41.0
Dinv19403 Davidia involucrata HOM05D000943 ORTHO05D010024 2.4e-06 57.4 239 31.0
Duzib150G0095 Durio zibethinus HOM05D001047 ORTHO05D000768 2.4e-06 57.4 133 35.3
Pp3c6_23650 Physcomitrium patens HOM05D002346 ORTHO05D002452 3.1e-06 57.0 219 30.6
Zm00001eb109190 Zea mays HOM05D001047 ORTHO05D000768 3.1e-06 57.0 184 29.9
Glyma.09G077500 Glycine max HOM05D001047 ORTHO05D000768 4.1e-06 56.6 158 32.9
CDE04G1925 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 5.3e-06 56.2 138 35.5
Hma1.2p1_0884F.1_g232490 Hydrangea macrophylla HOM05D001047 ORTHO05D000768 5.3e-06 56.2 199 31.2
Prupe.7G189200 Prunus persica HOM05D001047 ORTHO05D000768 5.3e-06 56.2 198 30.8
Dinv42416 Davidia involucrata HOM05D001047 ORTHO05D000768 7.0e-06 55.8 131 35.1
Ah.16g109020 Amaranthus hybridus HOM05D004643 ORTHO05D059934 9.1e-06 55.5 31 80.6
Glyma.15G184900 Glycine max HOM05D001047 ORTHO05D000768 9.1e-06 55.5 161 32.3


User provided reference genes

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