Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 2.5e-94 349.0 201 100.0
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 6.6e-55 218.0 123 82.9
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 9.2e-49 197.6 204 59.3
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 6.0e-48 194.9 180 60.6
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 4.3e-46 188.7 128 71.9
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 1.6e-45 186.8 206 55.8
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 8.0e-45 184.5 129 71.3
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 6.8e-44 181.4 127 70.1
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 1.2e-43 180.6 134 66.4
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.2e-43 180.6 126 71.4
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 1.2e-43 180.6 128 69.5
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 2.6e-43 179.5 132 68.9
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 5.8e-43 178.3 129 68.2
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 7.5e-43 177.9 119 73.9
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 1.7e-42 176.8 128 68.0
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 2.2e-42 176.4 122 68.9
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 4.9e-42 175.3 175 60.6
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 4.9e-42 175.3 130 64.6
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 9.2e-41 171.0 200 55.5
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.6e-40 170.2 107 76.6
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 2.7e-40 169.5 211 51.7
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 3.5e-40 169.1 121 68.6
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 4.6e-40 168.7 203 55.2
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 1.7e-39 166.8 206 50.0
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 2.3e-39 166.4 202 47.0
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 2.3e-39 166.4 202 47.0
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 3.0e-39 166.0 126 65.9
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 6.6e-39 164.9 121 66.1
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 8.6e-39 164.5 115 70.4
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 8.6e-39 164.5 127 66.1
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 8.6e-39 164.5 121 70.2
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 1.1e-38 164.1 102 74.5
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 1.1e-38 164.1 127 66.9
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 2.5e-38 162.9 192 52.6
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 4.3e-38 162.2 129 68.2
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 4.3e-38 162.2 127 64.6
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.2e-37 160.6 110 68.2
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.6e-37 160.2 119 68.9
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.6e-37 160.2 119 68.9
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 2.1e-37 159.8 127 66.1
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 8.1e-37 157.9 122 65.6
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.1e-36 157.5 213 52.6
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 2.3e-36 156.4 119 66.4
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 3.1e-36 156.0 118 65.3
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 4.0e-36 155.6 119 68.1
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 4.0e-36 155.6 123 64.2
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 8.9e-36 154.5 208 51.4
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 8.9e-36 154.5 96 79.2
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.2e-35 154.1 130 62.3
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 2.6e-35 152.9 146 53.4
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.4e-35 152.1 130 62.3
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 7.5e-35 151.4 111 66.7
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 7.5e-35 151.4 203 52.2
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 1.3e-34 150.6 121 61.2
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 1.3e-34 150.6 121 61.2
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 1.3e-34 150.6 121 61.2
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 2.9e-34 149.4 110 64.5
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 6.4e-34 148.3 100 75.0
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 6.4e-34 148.3 131 59.5
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 8.3e-34 147.9 92 73.9
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 8.3e-34 147.9 93 75.3
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 1.1e-33 147.5 94 72.3
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 1.4e-33 147.1 111 66.7
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 1.9e-33 146.7 204 53.9
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 3.2e-33 146.0 115 65.2
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 3.2e-33 146.0 115 65.2
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 3.2e-33 146.0 126 61.9
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 4.1e-33 145.6 128 60.2
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 5.4e-33 145.2 101 65.3
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 2.1e-32 143.3 120 60.8
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 2.1e-32 143.3 86 76.7
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.7e-32 142.9 95 73.7
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 3.5e-32 142.5 169 47.3
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.6e-32 142.1 96 72.9
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 4.6e-32 142.1 124 56.5
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 6.0e-32 141.7 99 73.7
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 7.8e-32 141.4 117 63.2
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 7.8e-32 141.4 117 63.2
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 2.3e-31 139.8 210 52.9
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 3.9e-31 139.0 206 48.5
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.9e-31 139.0 213 48.8
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 5.1e-31 138.7 98 70.4
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 1.1e-30 137.5 118 64.4
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.1e-30 137.5 95 73.7
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 1.5e-30 137.1 114 62.3
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 5.6e-30 135.2 212 50.9
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 7.3e-30 134.8 90 70.0
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 9.5e-30 134.4 85 75.3
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 1.2e-29 134.0 89 70.8
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.8e-29 132.9 127 57.5
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 6.2e-29 131.7 126 55.6
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 1.8e-28 130.2 124 56.5
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 3.1e-28 129.4 89 69.7
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 5.2e-28 128.6 78 84.6
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 9.9e-27 124.4 188 54.3
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 2.9e-26 122.9 211 39.8
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 3.8e-26 122.5 202 53.0
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 1.9e-25 120.2 73 80.8
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 3.2e-25 119.4 223 42.6
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 9.2e-25 117.9 92 66.3
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 1.2e-24 117.5 120 54.2
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 2.1e-24 116.7 80 75.0
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 2.1e-24 116.7 92 65.2
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 3.5e-24 115.9 74 78.4
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 6.0e-24 115.2 75 73.3
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 7.8e-24 114.8 110 61.8
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.0e-23 114.4 202 38.6
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 8.7e-23 111.3 72 70.8
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 1.1e-22 110.9 116 50.0
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 7.3e-22 108.2 70 75.7
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 9.6e-22 107.8 80 62.5
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 1.2e-21 107.5 73 75.3
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 1.2e-21 107.5 120 50.0
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 2.8e-21 106.3 205 43.9
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 4.7e-21 105.5 65 80.0
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 1.1e-20 104.4 108 50.9
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 3.1e-20 102.8 92 56.5
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 1.2e-19 100.9 60 78.3
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.2e-19 100.9 66 75.8
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 2.2e-18 96.7 71 67.6
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 2.2e-18 96.7 84 56.0
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 3.8e-18 95.9 114 50.9
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 6.4e-18 95.1 128 46.1
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 4.2e-17 92.4 119 47.9
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 4.2e-17 92.4 101 52.5
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 5.4e-17 92.0 69 65.2
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 7.1e-17 91.7 89 58.4
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 9.3e-17 91.3 135 37.0
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 1.6e-16 90.5 68 67.6
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.6e-16 90.5 65 75.4
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 2.7e-16 89.7 91 51.6
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 6.0e-16 88.6 90 51.1
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 6.0e-16 88.6 90 51.1
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 6.0e-16 88.6 123 45.5
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 1.7e-15 87.0 97 51.5
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 3.0e-15 86.3 107 47.7
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 3.0e-15 86.3 73 58.9
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 3.0e-15 86.3 72 54.2
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 5.1e-15 85.5 60 68.3
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 5.1e-15 85.5 104 49.0
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 5.1e-15 85.5 61 67.2
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 1.1e-14 84.3 121 45.5
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 3.3e-14 82.8 118 45.8
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 5.6e-14 82.0 106 45.3
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 7.3e-14 81.6 61 65.6
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 2.8e-13 79.7 52 76.9
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 3.6e-13 79.3 124 42.7
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 3.6e-13 79.3 116 46.6
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 1.1e-12 77.8 63 68.3
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 1.4e-12 77.4 56 73.2
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 1.8e-12 77.0 78 51.3
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.8e-12 77.0 48 85.4
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 1.2e-11 74.3 51 68.6
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.2e-11 74.3 126 36.5
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.2e-11 74.3 45 80.0
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 2.0e-11 73.6 48 70.8
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 3.4e-11 72.8 47 74.5
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 4.5e-11 72.4 79 53.2
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 7.6e-11 71.6 47 78.7
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 1.3e-10 70.9 65 58.5
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.3e-10 70.9 48 75.0
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 3.8e-10 69.3 42 78.6
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 4.9e-10 68.9 38 84.2
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 1.1e-09 67.8 58 63.8
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 1.4e-09 67.4 45 71.1
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 1.9e-09 67.0 44 72.7
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 4.2e-09 65.9 38 81.6
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.6e-08 63.9 63 50.8
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 6.0e-08 62.0 61 50.8
AagrBONN_evm.TU.Sc2ySwM_362.2112 Anthoceros agrestis HOM05D002369 ORTHO05D002435 3.0e-07 59.7 106 31.1
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 5.1e-07 58.9 37 78.4
THA.LOC104808881 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 3.3e-06 56.2 52 57.7
Mapoly0073s0064 Marchantia polymorpha HOM05D002369 ORTHO05D002435 4.3e-06 55.8 105 35.2


User provided reference genes

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