Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 3.7e-171 604.7 300 100.0
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 7.9e-129 464.2 292 81.5
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 5.6e-127 458.0 292 79.5
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 1.3e-126 456.8 292 80.1
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 3.6e-126 455.3 292 79.1
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 1.2e-124 450.3 292 78.4
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 2.9e-123 445.7 292 78.1
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 8.4e-123 444.1 292 76.7
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 1.9e-122 443.0 292 76.4
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 4.6e-121 438.3 292 76.4
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 6.0e-121 438.0 292 75.0
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 7.9e-121 437.6 292 77.1
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 7.9e-121 437.6 292 76.4
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 1.3e-120 436.8 292 76.7
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 1.3e-120 436.8 292 75.7
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.8e-120 436.4 292 75.7
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 1.8e-120 436.4 292 75.0
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 2.3e-120 436.0 292 75.7
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 3.0e-120 435.6 292 76.7
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 3.9e-120 435.3 295 73.9
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 5.1e-120 434.9 292 76.7
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 5.1e-120 434.9 292 75.7
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 5.1e-120 434.9 292 75.0
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 6.7e-120 434.5 292 76.4
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 6.7e-120 434.5 291 76.3
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 1.1e-119 433.7 292 76.7
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 1.5e-119 433.3 292 75.7
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 1.5e-119 433.3 292 76.7
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 1.5e-119 433.3 292 75.0
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 2.5e-119 432.6 314 73.9
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 2.5e-119 432.6 314 73.9
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 3.3e-119 432.2 292 76.4
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 3.3e-119 432.2 297 73.7
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 7.4e-119 431.0 292 74.7
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 9.6e-119 430.6 292 76.0
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 9.6e-119 430.6 292 76.0
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 9.6e-119 430.6 292 76.0
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 9.6e-119 430.6 292 76.4
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 1.6e-118 429.9 292 75.7
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 1.6e-118 429.9 292 76.0
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 2.1e-118 429.5 292 75.7
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 2.1e-118 429.5 292 75.7
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 2.8e-118 429.1 292 74.0
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 4.8e-118 428.3 292 73.6
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 4.8e-118 428.3 292 73.6
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 6.2e-118 427.9 292 75.7
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 8.1e-118 427.6 292 75.0
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 8.1e-118 427.6 292 75.0
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 1.4e-117 426.8 292 75.0
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 1.4e-117 426.8 292 75.7
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 1.8e-117 426.4 292 74.7
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 4.0e-117 425.2 292 73.3
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 5.3e-117 424.9 292 74.3
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 6.9e-117 424.5 292 75.3
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 9.0e-117 424.1 295 74.2
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 2.0e-116 422.9 292 74.7
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 2.6e-116 422.5 292 74.3
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 2.6e-116 422.5 292 72.9
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 2.6e-116 422.5 296 73.0
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 4.5e-116 421.8 294 73.8
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 1.0e-115 420.6 292 72.3
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 1.0e-115 420.6 292 74.7
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 2.9e-115 419.1 295 71.2
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 3.8e-115 418.7 292 72.6
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 4.9e-115 418.3 297 72.4
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 4.9e-115 418.3 292 70.5
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 7.1e-114 414.5 292 71.6
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 1.6e-113 413.3 292 71.2
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 1.6e-113 413.3 292 71.9
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 2.7e-113 412.5 292 72.3
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 6.0e-113 411.4 292 71.6
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 7.9e-113 411.0 292 70.9
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 1.0e-112 410.6 292 70.9
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 1.3e-112 410.2 292 71.6
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 3.0e-112 409.1 292 72.3
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 3.9e-112 408.7 292 70.5
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 3.9e-112 408.7 293 72.7
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 5.1e-112 408.3 292 71.6
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 1.5e-111 406.8 292 70.9
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 1.5e-111 406.8 292 70.9
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 1.5e-111 406.8 292 71.6
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 3.3e-111 405.6 292 70.9
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 3.3e-111 405.6 292 71.6
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 7.4e-111 404.4 292 70.9
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 1.3e-110 403.7 292 70.2
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 1.6e-110 403.3 292 70.9
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 2.8e-110 402.5 293 69.3
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 3.7e-110 402.1 292 71.6
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 6.3e-110 401.4 292 70.5
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 1.8e-109 399.8 295 69.8
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 1.2e-108 397.1 292 69.9
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 3.4e-108 395.6 298 66.1
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 7.6e-108 394.4 292 66.8
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 5.5e-106 388.3 292 68.2
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 1.2e-105 387.1 294 71.1
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 1.1e-103 380.6 296 66.6
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 7.4e-103 377.9 307 66.4
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 1.0e-99 367.5 292 61.6
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 3.6e-97 359.0 293 62.1
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 9.7e-95 350.9 298 59.4
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 8.5e-91 337.8 292 58.2
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 1.4e-88 330.5 294 56.1
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 5.0e-83 312.0 292 56.2
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 9.4e-82 307.8 292 54.8
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.6e-76 290.4 296 49.7
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.0e-71 273.5 293 47.1
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.7e-70 270.4 292 48.3
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 3.3e-50 203.0 132 73.5
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 5.6e-50 202.2 110 90.9
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 5.6e-50 202.2 110 90.9
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 8.0e-49 198.4 133 73.7
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 1.7e-46 190.7 116 74.1
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 2.9e-46 189.9 103 92.2
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 8.3e-46 188.3 124 75.8
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.1e-45 188.0 139 63.3
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 2.2e-30 137.1 328 28.7
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 1.4e-24 117.9 62 95.2
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 5.8e-23 112.5 122 48.4
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 3.6e-17 93.2 62 74.2
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 4.0e-16 89.7 52 78.8
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 3.4e-15 86.7 47 83.0
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 2.4e-13 80.5 74 67.6
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 2.4e-13 80.5 74 67.6
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 1.6e-12 77.8 60 71.7
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 1.8e-11 74.3 45 73.3
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 2.8e-09 67.0 55 56.4
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 2.8e-09 67.0 53 66.0
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 5.3e-08 62.8 45 66.7
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 6.9e-08 62.4 52 59.6
BcaC03g13346 Brassica carinata HOM05D004589 ORTHO05D023960 3.4e-07 60.1 48 72.9
BcaC03g13345 Brassica carinata HOM05D004589 ORTHO05D023960 9.9e-07 58.5 47 72.3


User provided reference genes

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