Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0164F.1_g073150 Hydrangea macrophylla HOM05D000555 ORTHO05D001906 6.1e-42 173.7 86 100.0
Hma1.2p1_1175F.1_g264040 Hydrangea macrophylla HOM05D000555 ORTHO05D001906 1.1e-14 83.2 43 95.3
Dinv04395 Davidia involucrata HOM05D000555 ORTHO05D001906 7.0e-14 80.5 72 62.5
CSS0012615 Camellia sinensis var. sinensis HOM05D000555 ORTHO05D001906 2.0e-13 79.0 42 92.9
CSS0028716 Camellia sinensis var. sinensis HOM05D000555 ORTHO05D001906 2.0e-13 79.0 42 92.9
TAR624G0718 Trochodendron aralioides HOM05D000555 ORTHO05D001906 2.7e-13 78.6 42 88.1
GSVIVG01002731001 Vitis vinifera HOM05D000555 ORTHO05D001906 2.7e-13 78.6 42 88.1
Rhsim13G0140500 Rhododendron simsii HOM05D000555 ORTHO05D001906 4.5e-13 77.8 42 88.1
Dinv15337 Davidia involucrata HOM05D000555 ORTHO05D001906 7.7e-13 77.0 42 90.5
CAN.G1156.22 Capsicum annuum HOM05D000555 ORTHO05D001906 2.3e-12 75.5 42 83.3
Lj2C256T17 Lonicera japonica HOM05D000555 ORTHO05D001906 2.3e-12 75.5 42 88.1
CSS0020180 Camellia sinensis var. sinensis HOM05D000555 ORTHO05D001906 2.9e-12 75.1 42 88.1
Peaxi162Scf00827g00520 Petunia axillaris HOM05D000555 ORTHO05D001906 2.9e-12 75.1 42 83.3
Actinidia01447 Actinidia chinensis HOM05D000555 ORTHO05D001906 6.6e-12 73.9 42 83.3
Cc09_g00310 Coffea canephora HOM05D000555 ORTHO05D001906 8.6e-12 73.6 42 81.0
Nitab4.5_0001296g0110 Nicotiana tabacum HOM05D000555 ORTHO05D001906 1.5e-11 72.8 42 78.6
vmacro03607 Vaccinium macrocarpon HOM05D000555 ORTHO05D001906 1.5e-11 72.8 42 83.3
MSTRG.13105 Avicennia marina HOM05D000555 ORTHO05D001906 1.9e-11 72.4 42 78.6
Duzib192G0010 Durio zibethinus HOM05D000555 ORTHO05D001906 1.9e-11 72.4 42 78.6
Migut.M01445 Erythranthe guttata HOM05D000555 ORTHO05D001906 1.9e-11 72.4 42 78.6
Nn1g03168 Nelumbo nucifera HOM05D000555 ORTHO05D001906 1.9e-11 72.4 42 76.2
Oeu057018.1 Olea europaea HOM05D000555 ORTHO05D001906 2.5e-11 72.0 42 76.2
SGA_v2.0_scaffold49G18219 Striga asiatica HOM05D000555 ORTHO05D001906 3.3e-11 71.6 42 78.6
Solyc11g012770.2 Solanum lycopersicum HOM05D000555 ORTHO05D001906 4.2e-11 71.2 42 78.6
Sopen11g007510 Solanum pennellii HOM05D000555 ORTHO05D001906 4.2e-11 71.2 42 78.6
Atru.chr1.2254 Acer truncatum HOM05D000555 ORTHO05D001906 7.2e-11 70.5 42 81.0
DCAR_030833 Daucus carota HOM05D000555 ORTHO05D001906 7.2e-11 70.5 42 81.0
ECA248G1369 Erigeron canadensis HOM05D000555 ORTHO05D001906 7.2e-11 70.5 42 78.6
Migut.H01632 Erythranthe guttata HOM05D000555 ORTHO05D001906 7.2e-11 70.5 42 73.8
Gohir.A09G067800 Gossypium hirsutum HOM05D000555 ORTHO05D001906 7.2e-11 70.5 42 78.6
Gohir.D09G067600 Gossypium hirsutum HOM05D000555 ORTHO05D001906 7.2e-11 70.5 42 78.6
Gorai.006G082000 Gossypium raimondii HOM05D000555 ORTHO05D001906 7.2e-11 70.5 42 78.6
Actinidia02283 Actinidia chinensis HOM05D000555 ORTHO05D001906 9.5e-11 70.1 41 85.4
Ciclev10014035m.g Citrus clementina HOM05D000555 ORTHO05D001906 1.2e-10 69.7 42 76.2
Oeu044433.1 Olea europaea HOM05D000555 ORTHO05D001906 1.2e-10 69.7 42 73.8
SGA_v2.0_scaffold239G43974 Striga asiatica HOM05D000555 ORTHO05D001906 1.6e-10 69.3 42 73.8
Prupe.4G003600 Prunus persica HOM05D000555 ORTHO05D001906 2.1e-10 68.9 42 81.0
TWI38G2314 Tripterygium wilfordii HOM05D000555 ORTHO05D001906 2.1e-10 68.9 72 54.2
Manes.09G083700 Manihot esculenta HOM05D000555 ORTHO05D001906 2.8e-10 68.6 42 71.4
ClCG01G011160 Citrullus lanatus HOM05D000555 ORTHO05D001906 3.6e-10 68.2 42 73.8
Haze_07020 Corylus avellana HOM05D000555 ORTHO05D001906 4.7e-10 67.8 42 73.8
Manes.08G068700 Manihot esculenta HOM05D000555 ORTHO05D001906 4.7e-10 67.8 42 76.2
Nn1g07523 Nelumbo nucifera HOM05D000555 ORTHO05D001906 4.7e-10 67.8 71 53.5
Oeu025966.1 Olea europaea HOM05D000555 ORTHO05D001906 4.7e-10 67.8 42 71.4
Sed0016925 Sechium edule HOM05D000555 ORTHO05D001906 4.7e-10 67.8 42 73.8
TWI63G0122 Tripterygium wilfordii HOM05D000555 ORTHO05D001906 4.7e-10 67.8 42 73.8
DCAR_002243 Daucus carota HOM05D000555 ORTHO05D001906 6.1e-10 67.4 42 78.6
FvH4_3g00310 Fragaria vesca HOM05D000555 ORTHO05D001906 6.1e-10 67.4 42 78.6
FAN21G3189 Fragaria x ananassa HOM05D000555 ORTHO05D001906 6.1e-10 67.4 42 78.6
FAN25G3005 Fragaria x ananassa HOM05D000555 ORTHO05D001906 6.1e-10 67.4 42 78.6
RcHm_v2.0_Chr5g0000481 Rosa chinensis HOM05D000555 ORTHO05D001906 6.1e-10 67.4 42 78.6
SalBow1G3972 Salvia bowleyana HOM05D000555 ORTHO05D001906 6.1e-10 67.4 41 73.2
Sc17g0008000 Simmondsia chinensis HOM05D000555 ORTHO05D001906 6.1e-10 67.4 42 76.2
MSTRG.16054 Avicennia marina HOM05D000555 ORTHO05D001906 8.0e-10 67.0 42 73.8
CiPaw.09G108900 Carya illinoinensis HOM05D000555 ORTHO05D001906 8.0e-10 67.0 42 76.2
MELO3C025570.2 Cucumis melo HOM05D000555 ORTHO05D001906 8.0e-10 67.0 42 73.8
Lalb_Chr07g0176931 Lupinus albus HOM05D000555 ORTHO05D001906 8.0e-10 67.0 42 76.2
PSO210G1034 Papaver somniferum HOM05D000555 ORTHO05D001906 8.0e-10 67.0 42 73.8
SGA_v2.0_scaffold7G03693 Striga asiatica HOM05D000555 ORTHO05D001906 8.0e-10 67.0 42 73.8
Thecc.06G241200 Theobroma cacao HOM05D000555 ORTHO05D001906 8.0e-10 67.0 72 52.8
Potri.006G004750 Populus trichocarpa HOM05D000555 ORTHO05D001906 1.0e-09 66.6 42 73.8
Potri.016G005400 Populus trichocarpa HOM05D000555 ORTHO05D001906 1.0e-09 66.6 42 73.8
Sabra06G0004000 Salix brachista HOM05D000555 ORTHO05D001906 1.0e-09 66.6 42 73.8
Sabra16G0010300 Salix brachista HOM05D000555 ORTHO05D001906 1.0e-09 66.6 42 73.8
ECA234G0651 Erigeron canadensis HOM05D000555 ORTHO05D001906 1.4e-09 66.2 42 76.2
HanXRQChr01g0003561 Helianthus annuus HOM05D000555 ORTHO05D001906 1.4e-09 66.2 42 76.2
Duzib235G0542 Durio zibethinus HOM05D000555 ORTHO05D001906 1.8e-09 65.9 42 73.8
MD05G1361800 Malus domestica HOM05D000555 ORTHO05D001906 1.8e-09 65.9 42 76.2
CiPaw.10G082000 Carya illinoinensis HOM05D000555 ORTHO05D001906 2.3e-09 65.5 42 76.2
CsaV3_1G015470 Cucumis sativus L. HOM05D000555 ORTHO05D001906 2.3e-09 65.5 42 71.4
Cpa.g.sc27.226 Carica papaya HOM05D000555 ORTHO05D001906 3.0e-09 65.1 42 73.8
Os06g0286351 Oryza sativa ssp. japonica HOM05D000555 ORTHO05D001906 3.0e-09 65.1 71 45.1
Glyma.17G005500 Glycine max HOM05D000555 ORTHO05D001906 4.0e-09 64.7 42 73.8
HanXRQChr16g0515741 Helianthus annuus HOM05D000555 ORTHO05D001906 4.0e-09 64.7 58 58.6
Lsat_1_v5_gn_1_130161 Lactuca sativa HOM05D000555 ORTHO05D001906 4.0e-09 64.7 42 73.8
CDE05G2238 Ceratophyllum demersum HOM05D000555 ORTHO05D001906 5.2e-09 64.3 42 71.4
CDE05G2436 Ceratophyllum demersum HOM05D000555 ORTHO05D001906 5.2e-09 64.3 42 71.4
Lalb_Chr20g0119541 Lupinus albus HOM05D000555 ORTHO05D001906 6.8e-09 63.9 42 71.4
QL05p067756 Quercus lobata HOM05D000555 ORTHO05D001906 6.8e-09 63.9 42 71.4
Gohir.A06G203800 Gossypium hirsutum HOM05D000555 ORTHO05D001906 8.9e-09 63.5 42 69.0
Gohir.D06G217750 Gossypium hirsutum HOM05D000555 ORTHO05D001906 8.9e-09 63.5 42 69.0
Gorai.010G248500 Gossypium raimondii HOM05D000555 ORTHO05D001906 8.9e-09 63.5 42 69.0
Zm00001eb280900 Zea mays HOM05D000555 ORTHO05D001906 8.9e-09 63.5 71 45.1
Glyma.07G268200 Glycine max HOM05D000555 ORTHO05D001906 1.2e-08 63.2 42 71.4
arahy.Tifrunner.gnm1.ann1.BX9WGX Arachis hypogaea HOM05D000555 ORTHO05D001906 1.5e-08 62.8 42 71.4
arahy.Tifrunner.gnm1.ann1.JIL7XJ Arachis hypogaea HOM05D000555 ORTHO05D001906 1.5e-08 62.8 42 71.4
Eucgr.E03853 Eucalyptus grandis HOM05D000555 ORTHO05D001906 1.5e-08 62.8 42 69.0
Lsat_1_v5_gn_4_63920 Lactuca sativa HOM05D000555 ORTHO05D001906 2.0e-08 62.4 43 74.4
unitig_21.g20239 Utricularia gibba HOM05D000555 ORTHO05D001906 2.0e-08 62.4 39 66.7
MBI14_g10147_MAGBIO Magnolia biondii HOM05D000555 ORTHO05D001906 2.6e-08 62.0 42 61.9
CANSAT56G1713 Cannabis sativa HOM05D000555 ORTHO05D001906 3.4e-08 61.6 42 66.7
AUR62012854 Chenopodium quinoa HOM05D000555 ORTHO05D001906 3.4e-08 61.6 42 66.7
Lj4g0005227 Lotus japonicus HOM05D000555 ORTHO05D001906 3.4e-08 61.6 37 78.4
PGR042G1037 Punica granatum HOM05D000555 ORTHO05D001906 3.4e-08 61.6 42 66.7
EL10Ac8g20267 Beta vulgaris HOM05D000555 ORTHO05D001906 7.5e-08 60.5 42 64.3
Phvul.003G087100 Phaseolus vulgaris HOM05D000555 ORTHO05D001906 7.5e-08 60.5 42 69.0
Hund21131 Selenicereus undatus HOM05D000555 ORTHO05D001906 7.5e-08 60.5 42 66.7
VMungo1215G2808 Vigna mungo HOM05D000555 ORTHO05D001906 9.8e-08 60.1 42 66.7
AUR62021811 Chenopodium quinoa HOM05D000555 ORTHO05D001906 2.2e-07 58.9 42 64.3
MD10G1339300 Malus domestica HOM05D000555 ORTHO05D001906 2.2e-07 58.9 42 66.7
Medtr4g134080 Medicago truncatula HOM05D000555 ORTHO05D001906 2.2e-07 58.9 42 64.3
Ca_20991_v3 Cicer arietinum L. HOM05D000555 ORTHO05D001906 2.8e-07 58.5 42 66.7
Lj6g0000834 Lotus japonicus HOM05D000555 ORTHO05D001906 2.8e-07 58.5 42 64.3
Glyma.09G014600 Glycine max HOM05D000555 ORTHO05D001906 3.7e-07 58.2 42 66.7
TPR.G5976 Trifolium pratense HOM05D000555 ORTHO05D001906 3.7e-07 58.2 42 64.3
Ah.09g233870 Amaranthus hybridus HOM05D000555 ORTHO05D001906 4.9e-07 57.8 42 64.3
Medtr2g027090 Medicago truncatula HOM05D000555 ORTHO05D001906 6.3e-07 57.4 43 69.8
VMungo0540G1053 Vigna mungo HOM05D000555 ORTHO05D001906 6.3e-07 57.4 42 64.3
Glyma.15G120300 Glycine max HOM05D000555 ORTHO05D001906 8.3e-07 57.0 42 64.3
Zm00001eb380840 Zea mays HOM05D000555 ORTHO05D001906 1.4e-06 56.2 37 67.6
arahy.Tifrunner.gnm1.ann1.AVE6NE Arachis hypogaea HOM05D000555 ORTHO05D001906 1.8e-06 55.8 42 61.9
arahy.Tifrunner.gnm1.ann1.M87LIL Arachis hypogaea HOM05D000555 ORTHO05D001906 1.8e-06 55.8 42 61.9
TPR.G17534 Trifolium pratense HOM05D000555 ORTHO05D001906 1.8e-06 55.8 44 63.6
ATR0751G127 Amborella trichopoda HOM05D000555 ORTHO05D001906 2.4e-06 55.5 44 56.8
Lalb_Chr15g0088251 Lupinus albus HOM05D000555 ORTHO05D001906 3.1e-06 55.1 42 61.9
MBI15_g03489_MAGBIO Magnolia biondii HOM05D000555 ORTHO05D001906 3.1e-06 55.1 43 60.5
BcaC06g31349 Brassica carinata HOM05D000555 ORTHO05D001906 4.1e-06 54.7 42 59.5
BcaC06g34231 Brassica carinata HOM05D000555 ORTHO05D001906 4.1e-06 54.7 72 48.6
A06p44850 Brassica napus HOM05D000555 ORTHO05D001906 4.1e-06 54.7 42 59.5
C02p48870 Brassica napus HOM05D000555 ORTHO05D001906 4.1e-06 54.7 42 59.5
C07p31350 Brassica napus HOM05D000555 ORTHO05D001906 4.1e-06 54.7 72 48.6
BolC7t43676H Brassica oleracea HOM05D000555 ORTHO05D001906 4.1e-06 54.7 72 48.6
BraA06t27357Z Brassica rapa HOM05D000555 ORTHO05D001906 4.1e-06 54.7 42 59.5
AT5G47690 Arabidopsis thaliana HOM05D000555 ORTHO05D001906 5.4e-06 54.3 72 47.2
Phvul.006G138400 Phaseolus vulgaris HOM05D000555 ORTHO05D001906 5.4e-06 54.3 42 59.5
Thhalv10000739m.g Eutrema salsugineum HOM05D000555 ORTHO05D001906 7.0e-06 53.9 72 45.8
Sp2g12400 Schrenkiella parvula HOM05D000555 ORTHO05D001906 7.0e-06 53.9 72 45.8
Aqoxy1G02801 Aquilegia oxysepala HOM05D000555 ORTHO05D001906 9.2e-06 53.5 42 54.8
BcaC03g16985 Brassica carinata HOM05D000555 ORTHO05D001906 9.2e-06 53.5 42 59.5
BolC2t10981H Brassica oleracea HOM05D000555 ORTHO05D001906 9.2e-06 53.5 42 59.5
SEGI_14130 Sequoiadendron giganteum HOM05D000555 ORTHO05D001906 9.2e-06 53.5 34 67.6


User provided reference genes

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