Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0160F.1_g070650 Hydrangea macrophylla HOM05D000197 ORTHO05D000114 1.2e-32 142.5 69 100.0
Dinv31005 Davidia involucrata HOM05D000197 ORTHO05D000114 2.1e-13 78.6 49 79.6
Dinv31097 Davidia involucrata HOM05D000197 ORTHO05D000114 2.1e-13 78.6 49 79.6
Hma1.2p1_1017F.1_g248290 Hydrangea macrophylla HOM05D000197 ORTHO05D000114 8.1e-13 76.6 49 75.5
TAR622G0624 Trochodendron aralioides HOM05D000197 ORTHO05D000114 4.0e-12 74.3 49 75.5
Dinv24891 Davidia involucrata HOM05D000197 ORTHO05D000114 9.0e-12 73.2 49 73.5
AUR62013976 Chenopodium quinoa HOM05D000197 ORTHO05D000114 4.5e-11 70.9 49 71.4
Manes.05G090000 Manihot esculenta HOM05D000197 ORTHO05D000114 7.6e-11 70.1 49 67.3
Nitab4.5_0001474g0070 Nicotiana tabacum HOM05D000197 ORTHO05D000114 7.6e-11 70.1 49 69.4
Sabra10G0068600 Salix brachista HOM05D000197 ORTHO05D000114 7.6e-11 70.1 49 63.3
Potri.010G096000 Populus trichocarpa HOM05D000197 ORTHO05D000114 9.9e-11 69.7 49 65.3
AUR62005328 Chenopodium quinoa HOM05D000197 ORTHO05D000114 1.3e-10 69.3 49 69.4
Nitab4.5_0005555g0020 Nicotiana tabacum HOM05D000197 ORTHO05D000114 1.3e-10 69.3 49 67.3
vmacro16272 Vaccinium macrocarpon HOM05D000197 ORTHO05D000114 1.7e-10 68.9 49 67.3
Psat2g109600 Pisum sativum HOM05D000197 ORTHO05D000114 2.2e-10 68.6 49 65.3
Psat2g109640 Pisum sativum HOM05D000197 ORTHO05D000114 2.2e-10 68.6 49 65.3
TAR374G0922 Trochodendron aralioides HOM05D000197 ORTHO05D000114 2.9e-10 68.2 49 69.4
EL10Ac6g13631 Beta vulgaris HOM05D000197 ORTHO05D000114 3.8e-10 67.8 71 49.3
Lj3A1050T27 Lonicera japonica HOM05D000197 ORTHO05D000114 3.8e-10 67.8 49 67.3
TPR.G4411 Trifolium pratense HOM05D000197 ORTHO05D000114 3.8e-10 67.8 48 66.7
Peaxi162Scf00421g00328 Petunia axillaris HOM05D000197 ORTHO05D000114 4.9e-10 67.4 46 69.6
Ah.03g132470 Amaranthus hybridus HOM05D000197 ORTHO05D000114 8.4e-10 66.6 61 55.7
Rhsim12G0123000 Rhododendron simsii HOM05D000197 ORTHO05D000114 8.4e-10 66.6 49 65.3
Atru.chr11.1977 Acer truncatum HOM05D000197 ORTHO05D000114 1.1e-09 66.2 49 63.3
Ca_22763_v3 Cicer arietinum L. HOM05D000197 ORTHO05D000114 1.1e-09 66.2 49 63.3
GSVIVG01020183001 Vitis vinifera HOM05D000197 ORTHO05D000114 1.1e-09 66.2 47 66.0
Lalb_Chr16g0382431 Lupinus albus HOM05D000197 ORTHO05D000114 1.9e-09 65.5 49 61.2
Medtr5g035010 Medicago truncatula HOM05D000197 ORTHO05D000114 1.9e-09 65.5 49 59.2
Actinidia15014 Actinidia chinensis HOM05D000197 ORTHO05D000114 2.4e-09 65.1 49 63.3
CAN.G205.30 Capsicum annuum HOM05D000197 ORTHO05D000114 2.4e-09 65.1 45 66.7
Cpa.g.sc258.3 Carica papaya HOM05D000197 ORTHO05D000114 3.2e-09 64.7 49 65.3
MD13G1088200 Malus domestica HOM05D000197 ORTHO05D000114 3.2e-09 64.7 59 57.6
MD16G1088600 Malus domestica HOM05D000197 ORTHO05D000114 3.2e-09 64.7 45 66.7
CANSAT01G0021 Cannabis sativa HOM05D000197 ORTHO05D000114 5.4e-09 63.9 49 63.3
Lj2g0009876 Lotus japonicus HOM05D000197 ORTHO05D000114 5.4e-09 63.9 63 52.4
ClCG05G025130 Citrullus lanatus HOM05D000197 ORTHO05D000114 7.1e-09 63.5 49 67.3
TPR.G4435 Trifolium pratense HOM05D000197 ORTHO05D000114 7.1e-09 63.5 48 62.5
DCAR_031085 Daucus carota HOM05D000197 ORTHO05D000114 9.3e-09 63.2 48 62.5
MBI15_g00934_MAGBIO Magnolia biondii HOM05D000197 ORTHO05D000114 9.3e-09 63.2 45 64.4
TAR622G0730 Trochodendron aralioides HOM05D000197 ORTHO05D000114 9.3e-09 63.2 45 64.4
HanXRQChr11g0351041 Helianthus annuus HOM05D000197 ORTHO05D000114 1.2e-08 62.8 49 61.2
Sc04g0008950 Simmondsia chinensis HOM05D000197 ORTHO05D000114 1.2e-08 62.8 44 65.9
TPR.G25548 Trifolium pratense HOM05D000197 ORTHO05D000114 1.2e-08 62.8 45 62.2
TAR629G0887 Trochodendron aralioides HOM05D000197 ORTHO05D000114 1.2e-08 62.8 49 63.3
arahy.Tifrunner.gnm1.ann1.GR2U56 Arachis hypogaea HOM05D000197 ORTHO05D000114 1.6e-08 62.4 49 59.2
arahy.Tifrunner.gnm1.ann1.WD2ETH Arachis hypogaea HOM05D000197 ORTHO05D000114 1.6e-08 62.4 49 59.2
Cfa009126 Carpinus fangiana HOM05D000197 ORTHO05D000114 1.6e-08 62.4 49 63.3
Ciclev10032973m.g Citrus clementina HOM05D000197 ORTHO05D000114 1.6e-08 62.4 45 66.7
Glyma.01G034000 Glycine max HOM05D000197 ORTHO05D000114 1.6e-08 62.4 49 61.2
Lsat_1_v5_gn_3_48941 Lactuca sativa HOM05D000197 ORTHO05D000114 1.6e-08 62.4 49 63.3
MSTRG.611 Avicennia marina HOM05D000197 ORTHO05D000114 2.1e-08 62.0 47 59.6
Glyma.02G032300 Glycine max HOM05D000197 ORTHO05D000114 2.1e-08 62.0 49 59.2
Psat4g125760 Pisum sativum HOM05D000197 ORTHO05D000114 2.1e-08 62.0 49 57.1
Prupe.1G258100 Prunus persica HOM05D000197 ORTHO05D000114 2.1e-08 62.0 45 62.2
Sed0020136 Sechium edule HOM05D000197 ORTHO05D000114 2.1e-08 62.0 49 63.3
TPR.G6735 Trifolium pratense HOM05D000197 ORTHO05D000114 2.1e-08 62.0 45 62.2
Migut.L01436 Erythranthe guttata HOM05D000197 ORTHO05D000114 2.7e-08 61.6 47 59.6
CSS0039522 Camellia sinensis var. sinensis HOM05D000197 ORTHO05D000114 3.5e-08 61.2 49 57.1
PSO478G3712 Papaver somniferum HOM05D000197 ORTHO05D000114 4.6e-08 60.8 49 61.2
TWI36G1572 Tripterygium wilfordii HOM05D000197 ORTHO05D000114 4.6e-08 60.8 49 55.1
CiPaw.06G073000 Carya illinoinensis HOM05D000197 ORTHO05D000114 6.0e-08 60.5 49 65.3
FvH4_4g34890 Fragaria vesca HOM05D000197 ORTHO05D000114 6.0e-08 60.5 45 68.9
FAN12G1601 Fragaria x ananassa HOM05D000197 ORTHO05D000114 6.0e-08 60.5 45 68.9
QL03p062127 Quercus lobata HOM05D000197 ORTHO05D000114 7.9e-08 60.1 49 59.2
RcHm_v2.0_Chr4g0444321 Rosa chinensis HOM05D000197 ORTHO05D000114 7.9e-08 60.1 45 66.7
Solyc05g005865.1 Solanum lycopersicum HOM05D000197 ORTHO05D000114 7.9e-08 60.1 45 64.4
PGSC0003DMG400004131 Solanum tuberosum HOM05D000197 ORTHO05D000114 7.9e-08 60.1 45 62.2
Haze_12156 Corylus avellana HOM05D000197 ORTHO05D000114 1.0e-07 59.7 49 59.2
MELO3C012016.2 Cucumis melo HOM05D000197 ORTHO05D000114 1.0e-07 59.7 49 63.3
FAN07G2092 Fragaria x ananassa HOM05D000197 ORTHO05D000114 1.0e-07 59.7 45 66.7
FAN17G2379 Fragaria x ananassa HOM05D000197 ORTHO05D000114 1.0e-07 59.7 45 66.7
FAN22G1220 Fragaria x ananassa HOM05D000197 ORTHO05D000114 1.0e-07 59.7 45 66.7
vmacro16271 Vaccinium macrocarpon HOM05D000197 ORTHO05D000114 1.0e-07 59.7 48 60.4
Aqoxy3G00934 Aquilegia oxysepala HOM05D000197 ORTHO05D000114 1.3e-07 59.3 45 57.8
Cc11_g14370 Coffea canephora HOM05D000197 ORTHO05D000114 1.8e-07 58.9 47 61.7
Lj6C802G2 Lonicera japonica HOM05D000197 ORTHO05D000114 1.8e-07 58.9 49 53.1
Ca_04619_v3 Cicer arietinum L. HOM05D000197 ORTHO05D000114 2.3e-07 58.5 46 60.9
CsaV3_5G031770 Cucumis sativus L. HOM05D000197 ORTHO05D000114 2.3e-07 58.5 49 61.2
Duzib248G0646 Durio zibethinus HOM05D000197 ORTHO05D000114 2.3e-07 58.5 49 57.1
Lj3A1049T59 Lonicera japonica HOM05D000197 ORTHO05D000114 2.3e-07 58.5 49 55.1
ECA246G2358 Erigeron canadensis HOM05D000197 ORTHO05D000114 3.0e-07 58.2 49 57.1
PGR119G0191 Punica granatum HOM05D000197 ORTHO05D000114 3.0e-07 58.2 49 63.3
PSO017G5859 Papaver somniferum HOM05D000197 ORTHO05D000114 3.9e-07 57.8 45 55.6
PSO478G4376 Papaver somniferum HOM05D000197 ORTHO05D000114 3.9e-07 57.8 45 55.6
arahy.Tifrunner.gnm1.ann1.HV6VTP Arachis hypogaea HOM05D000197 ORTHO05D000114 5.1e-07 57.4 48 58.3
arahy.Tifrunner.gnm1.ann1.M7WURA Arachis hypogaea HOM05D000197 ORTHO05D000114 5.1e-07 57.4 48 58.3
HanXRQChr17g0563811 Helianthus annuus HOM05D000197 ORTHO05D000114 6.7e-07 57.0 49 55.1
Hund05969 Selenicereus undatus HOM05D000197 ORTHO05D000114 6.7e-07 57.0 49 53.1
Gohir.A01G139500 Gossypium hirsutum HOM05D000197 ORTHO05D000114 8.7e-07 56.6 49 57.1
Gohir.D01G130000 Gossypium hirsutum HOM05D000197 ORTHO05D000114 8.7e-07 56.6 49 57.1
Gorai.002G161000 Gossypium raimondii HOM05D000197 ORTHO05D000114 8.7e-07 56.6 49 57.1
unitig_22.g6474 Utricularia gibba HOM05D000197 ORTHO05D000114 8.7e-07 56.6 48 52.1
Thecc.02G247500 Theobroma cacao HOM05D000197 ORTHO05D000114 1.1e-06 56.2 49 55.1
arahy.Tifrunner.gnm1.ann1.MDNW8J Arachis hypogaea HOM05D000197 ORTHO05D000114 1.5e-06 55.8 44 56.8
Eucgr.B02546 Eucalyptus grandis HOM05D000197 ORTHO05D000114 1.5e-06 55.8 43 62.8
Os04g0465600 Oryza sativa ssp. japonica HOM05D000197 ORTHO05D000114 1.5e-06 55.8 47 53.2
Sopen05g001890 Solanum pennellii HOM05D000197 ORTHO05D000114 1.5e-06 55.8 45 60.0
Aa31LG7G7810 Aethionema arabicum HOM05D000197 ORTHO05D000114 1.9e-06 55.5 49 55.1
ATR1149G053 Amborella trichopoda HOM05D000197 ORTHO05D000114 1.9e-06 55.5 47 55.3
Zm00001eb080380 Zea mays HOM05D000197 ORTHO05D000114 2.5e-06 55.1 47 53.2
ECA246G3263 Erigeron canadensis HOM05D000197 ORTHO05D000114 3.3e-06 54.7 50 60.0
Gohir.A03G141700 Gossypium hirsutum HOM05D000197 ORTHO05D000114 3.3e-06 54.7 49 53.1
Gohir.D02G164700 Gossypium hirsutum HOM05D000197 ORTHO05D000114 3.3e-06 54.7 49 53.1
Gorai.005G184600 Gossypium raimondii HOM05D000197 ORTHO05D000114 3.3e-06 54.7 49 53.1
Lsat_1_v5_gn_5_100601 Lactuca sativa HOM05D000197 ORTHO05D000114 3.3e-06 54.7 49 55.1
SalBow2G0185 Salvia bowleyana HOM05D000197 ORTHO05D000114 3.3e-06 54.7 47 46.8
CARHR024320 Cardamine hirsuta HOM05D000197 ORTHO05D000114 4.3e-06 54.3 49 55.1
Lsat_1_v5_gn_5_100541 Lactuca sativa HOM05D000197 ORTHO05D000114 5.6e-06 53.9 49 55.1
Duzib268G1105 Durio zibethinus HOM05D000197 ORTHO05D000114 7.4e-06 53.5 49 51.0
Nn4g22865 Nelumbo nucifera HOM05D000197 ORTHO05D000114 7.4e-06 53.5 44 52.3
ECA246G1203 Erigeron canadensis HOM05D000226 ORTHO05D000114 9.6e-06 53.1 49 51.0
Thhalv10008991m.g Eutrema salsugineum HOM05D000197 ORTHO05D000114 9.6e-06 53.1 49 55.1
Lsat_1_v5_gn_5_100681 Lactuca sativa HOM05D000197 ORTHO05D000114 9.6e-06 53.1 49 57.1


User provided reference genes

Program Settings