Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0158F.1_g069575 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 1.3e-249 865.9 430 100.0
Hma1.2p1_0158F.1_g069580 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 1.3e-249 865.9 430 100.0
CSS0014125 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 5.7e-165 584.7 436 66.3
CSS0009455 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 7.5e-165 584.3 436 66.3
Dinv19082 Davidia involucrata HOM05D000783 ORTHO05D000705 8.3e-164 580.9 405 73.3
Cfa007750 Carpinus fangiana HOM05D005252 ORTHO05D006788 1.4e-158 563.5 422 66.6
TAR622G0726 Trochodendron aralioides HOM05D005252 ORTHO05D006788 3.7e-156 555.4 429 64.6
Haze_14323 Corylus avellana HOM05D005252 ORTHO05D006788 9.1e-155 550.8 422 66.1
Actinidia28776 Actinidia chinensis HOM05D005252 ORTHO05D006788 1.6e-154 550.1 428 64.5
QL02p064187 Quercus lobata HOM05D005252 ORTHO05D006788 1.0e-153 547.4 431 62.9
Cpa.g.sc178.38 Carica papaya HOM05D005252 ORTHO05D006788 3.6e-151 538.9 429 63.2
Lj2C511T2 Lonicera japonica HOM05D005252 ORTHO05D006788 3.0e-150 535.8 428 62.9
Potri.004G081400 Populus trichocarpa HOM05D005252 ORTHO05D006788 4.0e-150 535.4 426 62.2
Atru.chr1.2124 Acer truncatum HOM05D005252 ORTHO05D006788 1.7e-148 530.0 431 62.2
FvH4_1g27420 Fragaria vesca HOM05D005252 ORTHO05D006788 4.9e-148 528.5 425 62.6
RcHm_v2.0_Chr3g0488621 Rosa chinensis HOM05D005252 ORTHO05D006788 5.4e-147 525.0 417 64.7
CiPaw.04G049400 Carya illinoinensis HOM05D005252 ORTHO05D006788 7.0e-147 524.6 395 65.3
Prupe.3G014000 Prunus persica HOM05D005252 ORTHO05D006788 2.0e-146 523.1 431 62.4
FAN28G2815 Fragaria x ananassa HOM05D005252 ORTHO05D006788 2.9e-145 519.2 421 62.7
DCAR_003403 Daucus carota HOM05D005252 ORTHO05D006788 4.7e-143 511.9 424 60.4
LjContig00141g0010829 Lotus japonicus HOM05D005252 ORTHO05D006788 3.1e-142 509.2 422 60.2
arahy.Tifrunner.gnm1.ann1.UX6KKC Arachis hypogaea HOM05D005252 ORTHO05D006788 5.2e-142 508.4 422 58.8
Ciclev10011537m.g Citrus clementina HOM05D005252 ORTHO05D006788 1.5e-141 506.9 424 63.0
MD17G1287300 Malus domestica HOM05D005252 ORTHO05D006788 3.4e-141 505.8 429 60.8
arahy.Tifrunner.gnm1.ann1.Y82BEI Arachis hypogaea HOM05D005252 ORTHO05D006788 5.8e-141 505.0 422 58.3
GSVIVG01035253001 Vitis vinifera HOM05D005252 ORTHO05D006788 8.3e-140 501.1 422 60.9
VMungo0647G0073 Vigna mungo HOM05D005252 ORTHO05D006788 4.1e-139 498.8 421 58.9
Nn5g27060 Nelumbo nucifera HOM05D005252 ORTHO05D006788 5.4e-139 498.4 427 59.3
FAN28G2525 Fragaria x ananassa HOM05D005252 ORTHO05D006788 2.7e-138 496.1 404 62.9
TWI74G0077 Tripterygium wilfordii HOM05D005252 ORTHO05D006788 7.8e-138 494.6 417 61.6
CANSAT56G0277 Cannabis sativa HOM05D005252 ORTHO05D006788 1.7e-137 493.4 429 57.6
MBI06_g19632_MAGBIO Magnolia biondii HOM05D005252 ORTHO05D006788 3.0e-137 492.7 429 58.3
Lalb_Chr04g0251511 Lupinus albus HOM05D005252 ORTHO05D006788 3.9e-137 492.3 421 56.8
Medtr5g076640 Medicago truncatula HOM05D005252 ORTHO05D006788 5.0e-137 491.9 422 59.0
TPR.G5289 Trifolium pratense HOM05D005252 ORTHO05D006788 5.0e-137 491.9 422 57.8
Duzib133G0566 Durio zibethinus HOM05D005252 ORTHO05D006788 8.6e-137 491.1 422 60.0
PSO063G5026 Papaver somniferum HOM05D005252 ORTHO05D006788 2.5e-136 489.6 429 57.1
PGR004G2027 Punica granatum HOM05D005252 ORTHO05D006788 3.3e-136 489.2 426 58.5
COL.COLO4_20051 Corchorus olitorius HOM05D005252 ORTHO05D006788 4.3e-136 488.8 422 58.5
Ca_05755_v3 Cicer arietinum L. HOM05D005252 ORTHO05D006788 1.2e-135 487.3 422 58.1
FAN19G2162 Fragaria x ananassa HOM05D005252 ORTHO05D006788 2.8e-135 486.1 384 63.5
Glyma.14G209800 Glycine max HOM05D005252 ORTHO05D006788 8.0e-135 484.6 422 55.9
PSO782G3987 Papaver somniferum HOM05D005252 ORTHO05D006788 8.0e-135 484.6 429 57.1
Phvul.008G241400 Phaseolus vulgaris HOM05D005252 ORTHO05D006788 8.0e-135 484.6 421 57.5
ClCG05G011370 Citrullus lanatus HOM05D005252 ORTHO05D006788 1.8e-134 483.4 430 57.4
Sed0007469 Sechium edule HOM05D005252 ORTHO05D006788 6.8e-134 481.5 424 57.8
Psat2g042800 Pisum sativum HOM05D005252 ORTHO05D006788 2.2e-132 476.5 422 56.9
Aqoxy3G04163 Aquilegia oxysepala HOM05D005252 ORTHO05D006788 2.9e-132 476.1 431 58.0
Cc07_g12720 Coffea canephora HOM05D005252 ORTHO05D006788 4.9e-132 475.3 414 58.9
Nitab4.5_0000483g0240 Nicotiana tabacum HOM05D005252 ORTHO05D006788 7.0e-131 471.5 429 55.0
Sabra04G0054100 Salix brachista HOM05D005252 ORTHO05D006788 1.6e-130 470.3 411 59.4
Gohir.D12G051000 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.7e-130 469.5 430 56.0
HanXRQChr14g0443361 Helianthus annuus HOM05D005252 ORTHO05D006788 4.6e-130 468.8 423 55.1
CAN.G1681.16 Capsicum annuum HOM05D005252 ORTHO05D006788 7.8e-130 468.0 429 56.2
Lsat_1_v5_gn_2_71861 Lactuca sativa HOM05D005252 ORTHO05D006788 7.8e-130 468.0 423 54.4
Gorai.008G054300 Gossypium raimondii HOM05D005252 ORTHO05D006788 1.0e-129 467.6 430 55.8
AUR62037491 Chenopodium quinoa HOM05D005252 ORTHO05D006788 3.9e-129 465.7 418 57.4
arahy.Tifrunner.gnm1.ann1.2Q625H Arachis hypogaea HOM05D005252 ORTHO05D006788 1.1e-128 464.2 393 59.0
Gohir.A12G052400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 3.3e-128 462.6 430 55.8
CsaV3_3G021090 Cucumis sativus L. HOM05D005252 ORTHO05D006788 9.5e-128 461.1 398 57.5
THA.LOC104820865 Tarenaya hassleriana HOM05D005252 ORTHO05D006788 9.5e-128 461.1 430 55.6
AL6G28290 Arabidopsis lyrata HOM05D005252 ORTHO05D006788 2.8e-127 459.5 432 55.8
vmacro18507 Vaccinium macrocarpon HOM05D005252 ORTHO05D006788 1.4e-126 457.2 432 55.3
Ah.06g191550 Amaranthus hybridus HOM05D005252 ORTHO05D006788 4.0e-126 455.7 426 54.9
EL10Ac4g08917 Beta vulgaris HOM05D005252 ORTHO05D006788 5.2e-126 455.3 427 57.4
SGA_v2.0_scaffold115G32046 Striga asiatica HOM05D005252 ORTHO05D006788 5.2e-126 455.3 423 55.1
Manes.01G124000 Manihot esculenta HOM05D005252 ORTHO05D006788 6.8e-126 454.9 403 57.6
FAN23G1936 Fragaria x ananassa HOM05D005252 ORTHO05D006788 8.9e-126 454.5 441 56.5
Sp6g26990 Schrenkiella parvula HOM05D005252 ORTHO05D006788 8.9e-126 454.5 436 54.8
BraA02t05370Z Brassica rapa HOM05D005252 ORTHO05D006788 1.5e-125 453.8 425 55.3
SalBow5G4267 Salvia bowleyana HOM05D005252 ORTHO05D006788 1.5e-125 453.8 423 52.7
CARHR195970 Cardamine hirsuta HOM05D005252 ORTHO05D006788 3.4e-125 452.6 430 54.7
AUR62004761 Chenopodium quinoa HOM05D005252 ORTHO05D006788 4.4e-125 452.2 398 58.3
BcaC03g18544 Brassica carinata HOM05D005252 ORTHO05D006788 1.3e-124 450.7 425 54.4
Eucgr.F02912 Eucalyptus grandis HOM05D005252 ORTHO05D006788 4.1e-123 445.7 403 57.6
A02p04080 Brassica napus HOM05D005252 ORTHO05D006788 5.4e-123 445.3 425 54.1
Rhsim08G0021900 Rhododendron simsii HOM05D005252 ORTHO05D006788 1.6e-122 443.7 347 63.1
BcaNung00410 Brassica carinata HOM05D005252 ORTHO05D006788 2.1e-122 443.4 426 54.5
Thhalv10015946m.g Eutrema salsugineum HOM05D005252 ORTHO05D006788 2.7e-122 443.0 438 53.9
SalBow5G4252 Salvia bowleyana HOM05D005252 ORTHO05D006788 2.7e-122 443.0 423 51.5
AT5G17240 Arabidopsis thaliana HOM05D005252 ORTHO05D006788 6.0e-122 441.8 432 54.2
BolC2t06801H Brassica oleracea HOM05D005252 ORTHO05D006788 6.0e-122 441.8 425 53.4
C02p08920 Brassica napus HOM05D005252 ORTHO05D006788 1.7e-121 440.3 426 53.5
Sopen02g025950 Solanum pennellii HOM05D005252 ORTHO05D006788 4.3e-120 435.6 417 52.8
Aa31LG11G12430 Aethionema arabicum HOM05D005252 ORTHO05D006788 5.6e-120 435.3 430 53.0
Nitab4.5_0008137g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 5.6e-120 435.3 429 52.7
Nitab4.5_0011448g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 2.8e-119 433.0 418 52.9
ECA238G3559 Erigeron canadensis HOM05D005252 ORTHO05D006788 6.2e-119 431.8 406 53.7
Solyc02g081320.4 Solanum lycopersicum HOM05D005252 ORTHO05D006788 8.1e-119 431.4 419 52.3
PGSC0003DMG400016732 Solanum tuberosum HOM05D005252 ORTHO05D006788 8.1e-119 431.4 417 52.5
Peaxi162Scf00713g00214 Petunia axillaris HOM05D005252 ORTHO05D006788 8.9e-118 427.9 420 51.7
Thecc.04G057900 Theobroma cacao HOM05D005252 ORTHO05D006788 2.9e-116 422.9 353 58.4
CSS0013830 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 5.4e-115 418.7 421 53.7
HPP92_025609 Vanilla planifolia HOM05D005252 ORTHO05D006788 5.1e-113 412.1 402 52.7
Sc20g0000830 Simmondsia chinensis HOM05D005252 ORTHO05D006788 8.7e-113 411.4 398 52.8
Oeu060821.2 Olea europaea HOM05D005252 ORTHO05D006788 3.8e-108 396.0 423 49.6
Zm00001eb320090 Zea mays HOM05D005252 ORTHO05D006788 6.4e-108 395.2 410 49.8
arahy.Tifrunner.gnm1.ann1.P1K6DT Arachis hypogaea HOM05D005252 ORTHO05D006788 6.2e-103 378.6 326 55.8
Hund22213 Selenicereus undatus HOM05D005252 ORTHO05D006788 5.8e-101 372.1 449 45.9
Os07g0471100 Oryza sativa ssp. japonica HOM05D005252 ORTHO05D006788 3.8e-100 369.4 420 47.4
Migut.K00975 Erythranthe guttata HOM05D005252 ORTHO05D006788 1.1e-99 367.9 428 47.9
SEGI_32636 Sequoiadendron giganteum HOM05D005252 ORTHO05D006788 1.8e-97 360.5 483 42.4
SHI24494 Sapria himalayana HOM05D005252 ORTHO05D006788 5.3e-94 349.0 636 35.5
Carub.0006s1543 Capsella rubella HOM05D005252 ORTHO05D006788 2.6e-85 320.1 276 61.6
unitig_748.g8447 Utricularia gibba HOM05D001485 ORTHO05D001384 6.5e-76 288.9 405 43.5
Pp3c1_22230 Physcomitrium patens HOM05D005252 ORTHO05D006788 1.6e-74 284.3 453 40.8
Glyma.02G240302 Glycine max HOM05D005252 ORTHO05D006788 4.6e-74 282.7 227 57.7
SMO244G0074 Selaginella moellendorffii HOM05D005252 ORTHO05D006788 2.2e-68 263.8 400 38.0
ATR0807G108 Amborella trichopoda HOM05D005252 ORTHO05D006788 1.3e-63 248.1 218 58.7
Nitab4.5_0009456g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 1.7e-63 247.7 217 59.4
AagrBONN_evm.TU.Sc2ySwM_344.1683 Anthoceros agrestis HOM05D005252 ORTHO05D006788 2.4e-62 243.8 293 45.7
CDE04G0719 Ceratophyllum demersum HOM05D005252 ORTHO05D006788 1.4e-57 228.0 219 53.9
Psat6g212680 Pisum sativum HOM05D005252 ORTHO05D006788 5.9e-45 186.0 164 57.9
CBR_g38413 Chara braunii HOM05D005252 ORTHO05D006788 2.3e-41 174.1 352 33.8
DCAR_003402 Daucus carota HOM05D005252 ORTHO05D006788 3.0e-41 173.7 147 55.8
ATR0807G103 Amborella trichopoda HOM05D005252 ORTHO05D006788 1.5e-40 171.4 224 44.2
Mapoly0060s0114 Marchantia polymorpha HOM05D005252 ORTHO05D006788 1.7e-39 167.9 252 40.1
CDE04G0131 Ceratophyllum demersum HOM05D005252 ORTHO05D006788 1.7e-36 157.9 138 57.2
TAR622G0830 Trochodendron aralioides HOM05D005252 ORTHO05D006788 1.7e-36 157.9 118 67.8
CSS0049209 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 3.6e-34 150.2 111 64.9
AagrBONN_evm.TU.Sc2ySwM_344.1689 Anthoceros agrestis HOM05D005252 ORTHO05D006788 6.1e-34 149.4 160 49.4
MCO06G238 Micromonas commoda HOM05D005252 ORTHO05D006788 9.2e-30 135.6 267 34.8
Cre10.g437829 Chlamydomonas reinhardtii HOM05D005252 ORTHO05D006788 5.9e-29 132.9 506 25.1
MELO3C020240.2 Cucumis melo HOM05D005252 ORTHO05D006788 1.5e-27 128.3 119 58.0
PRCOL_00004140 Prasinoderma coloniale HOM05D005252 ORTHO05D006788 2.8e-26 124.0 430 28.1
Gohir.A06G122900 Gossypium hirsutum HOM05D005252 ORTHO05D006788 6.8e-25 119.4 128 47.7
Gohir.A01G173232 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.0e-24 117.9 92 59.8
Gohir.A02G112713 Gossypium hirsutum HOM05D005252 ORTHO05D006788 3.4e-24 117.1 101 53.5
Mapoly0060s0113 Marchantia polymorpha HOM05D005252 ORTHO05D006788 1.3e-23 115.2 120 53.3
Gohir.A08G081162 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.7e-23 114.8 92 59.8
Gohir.A01G088400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 8.3e-23 112.5 98 55.1
Gohir.A11G239440 Gossypium hirsutum HOM05D005252 ORTHO05D006788 5.0e-20 103.2 73 64.4
Gohir.A13G083166 Gossypium hirsutum HOM05D005252 ORTHO05D006788 7.5e-16 89.4 64 64.1
BcaC03g18542 Brassica carinata HOM05D005252 ORTHO05D032136 3.7e-15 87.0 58 70.7
Oeu024984.1 Olea europaea HOM05D005252 ORTHO05D006788 1.1e-09 68.9 50 60.0
Gohir.A07G145950 Gossypium hirsutum HOM05D005252 ORTHO05D006788 4.0e-09 67.0 49 59.2
Zm00001eb070340 Zea mays HOM05D005252 ORTHO05D006788 9.9e-08 62.4 71 50.7
Cre08.g368700 Chlamydomonas reinhardtii HOM05D005416 ORTHO05D020352 1.3e-07 62.0 152 28.9
Cpa.g.sc136.38 Carica papaya HOM05D004224 ORTHO05D006437 1.7e-07 61.6 333 23.7
SMO356G0148 Selaginella moellendorffii HOM05D005416 ORTHO05D007956 2.9e-07 60.8 343 23.3
C02p08900 Brassica napus HOM05D005252 ORTHO05D032136 4.9e-07 60.1 117 35.9
BolC2t06799H Brassica oleracea HOM05D005252 ORTHO05D032136 4.9e-07 60.1 117 35.9
Carub.0003s0725 Capsella rubella HOM05D004224 ORTHO05D006437 4.9e-07 60.1 324 23.5
GSVIVG01000252001 Vitis vinifera HOM05D007044 ORTHO05D008981 8.4e-07 59.3 225 28.0
Aa31LG5G18250 Aethionema arabicum HOM05D004224 ORTHO05D006437 1.1e-06 58.9 326 23.9
BolC1t05538H Brassica oleracea HOM05D004224 ORTHO05D006437 1.1e-06 58.9 324 23.1
AT3G07670 Arabidopsis thaliana HOM05D004224 ORTHO05D006437 1.4e-06 58.5 324 23.1
Ah.03g137430 Amaranthus hybridus HOM05D005416 ORTHO05D007956 3.2e-06 57.4 358 26.0
Thhalv10020552m.g Eutrema salsugineum HOM05D004224 ORTHO05D006437 3.2e-06 57.4 324 22.8
Gohir.A05G375000 Gossypium hirsutum HOM05D007044 ORTHO05D008981 3.2e-06 57.4 246 27.6
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 3.2e-06 57.4 44 56.8
Gohir.D04G040700 Gossypium hirsutum HOM05D007044 ORTHO05D008981 3.2e-06 57.4 348 24.4
Sp3g06610 Schrenkiella parvula HOM05D004224 ORTHO05D006437 3.2e-06 57.4 324 23.5
Gorai.012G045900 Gossypium raimondii HOM05D007044 ORTHO05D008981 7.1e-06 56.2 246 27.2
THA.LOC104802631 Tarenaya hassleriana HOM05D004224 ORTHO05D006437 7.1e-06 56.2 324 22.5


User provided reference genes

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