Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0157F.1_g068960 Hydrangea macrophylla HOM05D005755 ORTHO05D007006 1.8e-54 215.7 108 100.0
Dinv04676 Davidia involucrata HOM05D005755 ORTHO05D007006 5.3e-43 177.6 112 80.4
Dinv11808 Davidia involucrata HOM05D005755 ORTHO05D007006 2.9e-41 171.8 112 77.7
TAR381G1573 Trochodendron aralioides HOM05D005755 ORTHO05D007006 1.1e-40 169.9 109 79.8
DCAR_015273 Daucus carota HOM05D005755 ORTHO05D007006 7.1e-40 167.2 112 75.0
CSS0044562 Camellia sinensis var. sinensis HOM05D005755 ORTHO05D007006 1.6e-39 166.0 111 77.5
Nn5g30302 Nelumbo nucifera HOM05D005755 ORTHO05D007006 2.1e-39 165.6 109 78.9
Ciclev10033129m.g Citrus clementina HOM05D005755 ORTHO05D007006 3.0e-38 161.8 110 76.4
Duzib106G1131 Durio zibethinus HOM05D005755 ORTHO05D007006 3.0e-38 161.8 112 75.9
FvH4_7g20160 Fragaria vesca HOM05D005755 ORTHO05D007006 3.0e-38 161.8 110 74.5
vmacro04890 Vaccinium macrocarpon HOM05D005755 ORTHO05D007006 6.7e-38 160.6 114 73.7
FAN10G3796 Fragaria x ananassa HOM05D005755 ORTHO05D007006 1.5e-37 159.5 110 73.6
Gohir.A01G133200 Gossypium hirsutum HOM05D005755 ORTHO05D007006 1.5e-37 159.5 112 73.2
Gorai.002G143500 Gossypium raimondii HOM05D005755 ORTHO05D007006 1.5e-37 159.5 112 73.2
Cc00_g19060 Coffea canephora HOM05D005755 ORTHO05D007006 2.5e-37 158.7 116 74.1
Glyma.05G164400 Glycine max HOM05D005755 ORTHO05D007006 2.5e-37 158.7 109 74.3
QL08p056843 Quercus lobata HOM05D005755 ORTHO05D007006 2.5e-37 158.7 111 73.9
CsaV3_3G030820 Cucumis sativus L. HOM05D005755 ORTHO05D007006 4.3e-37 157.9 110 73.6
Thecc.10G068000 Theobroma cacao HOM05D005755 ORTHO05D007006 4.3e-37 157.9 112 73.2
Eucgr.G02800 Eucalyptus grandis HOM05D005755 ORTHO05D007006 5.7e-37 157.5 109 72.5
FAN01G0677 Fragaria x ananassa HOM05D005755 ORTHO05D007006 5.7e-37 157.5 110 73.6
Lsat_1_v5_gn_2_46180 Lactuca sativa HOM05D005755 ORTHO05D007006 5.7e-37 157.5 111 73.0
Glyma.08G121800 Glycine max HOM05D005755 ORTHO05D007006 9.7e-37 156.8 109 73.4
Aqoxy3G01116 Aquilegia oxysepala HOM05D005755 ORTHO05D007006 1.3e-36 156.4 105 74.3
Hund18453 Selenicereus undatus HOM05D005755 ORTHO05D007006 1.3e-36 156.4 109 72.5
Manes.10G042600 Manihot esculenta HOM05D005755 ORTHO05D007006 1.6e-36 156.0 108 75.0
Ca_19066_v3 Cicer arietinum L. HOM05D005755 ORTHO05D007006 2.2e-36 155.6 107 72.9
FAN06G3582 Fragaria x ananassa HOM05D005755 ORTHO05D007006 2.2e-36 155.6 108 71.3
Atru.chr12.636 Acer truncatum HOM05D005755 ORTHO05D007006 2.8e-36 155.2 108 74.1
Actinidia38859 Actinidia chinensis HOM05D005755 ORTHO05D007006 2.8e-36 155.2 105 72.4
MD07G1179300 Malus domestica HOM05D005755 ORTHO05D007006 3.7e-36 154.8 110 72.7
RcHm_v2.0_Chr1g0364121 Rosa chinensis HOM05D005755 ORTHO05D007006 3.7e-36 154.8 110 70.9
Thhalv10015092m.g Eutrema salsugineum HOM05D005755 ORTHO05D007006 4.8e-36 154.5 106 72.6
TPR.G12499 Trifolium pratense HOM05D005755 ORTHO05D007006 4.8e-36 154.5 107 71.0
Phvul.002G244400 Phaseolus vulgaris HOM05D005755 ORTHO05D007006 8.2e-36 153.7 109 70.6
Sed0018161 Sechium edule HOM05D005755 ORTHO05D007006 8.2e-36 153.7 110 71.8
Duzib114G0063 Durio zibethinus HOM05D005755 ORTHO05D007006 1.4e-35 152.9 112 71.4
GSVIVG01016339001 Vitis vinifera HOM05D005755 ORTHO05D007006 1.4e-35 152.9 109 72.5
MSTRG.8164 Avicennia marina HOM05D005755 ORTHO05D007006 1.8e-35 152.5 100 76.0
MD01G1131200 Malus domestica HOM05D005755 ORTHO05D007006 1.8e-35 152.5 110 71.8
PGR142G0594 Punica granatum HOM05D005755 ORTHO05D007006 1.8e-35 152.5 109 72.5
Sp6g14210 Schrenkiella parvula HOM05D005755 ORTHO05D007006 1.8e-35 152.5 107 71.0
Cpa.g.sc53.20 Carica papaya HOM05D005755 ORTHO05D007006 2.4e-35 152.1 100 77.0
CiPaw.15G145100 Carya illinoinensis HOM05D005755 ORTHO05D007006 2.4e-35 152.1 110 72.7
MBI19_g25006_MAGBIO Magnolia biondii HOM05D005755 ORTHO05D007006 3.1e-35 151.8 109 72.5
ECA238G0308 Erigeron canadensis HOM05D005755 ORTHO05D007006 4.1e-35 151.4 110 70.9
FAN03G2322 Fragaria x ananassa HOM05D005755 ORTHO05D007006 4.1e-35 151.4 105 73.3
Peaxi162Scf00373g00210 Petunia axillaris HOM05D005755 ORTHO05D007006 4.1e-35 151.4 114 69.3
BcaC03g14561 Brassica carinata HOM05D005755 ORTHO05D007006 5.3e-35 151.0 107 70.1
C02p20090 Brassica napus HOM05D005755 ORTHO05D007006 5.3e-35 151.0 107 70.1
Potri.008G044200 Populus trichocarpa HOM05D005755 ORTHO05D007006 5.3e-35 151.0 110 70.9
Prupe.2G218600 Prunus persica HOM05D005755 ORTHO05D007006 5.3e-35 151.0 110 68.2
BolC2t08139H Brassica oleracea HOM05D005755 ORTHO05D007006 6.9e-35 150.6 107 69.2
Medtr6g068850 Medicago truncatula HOM05D005755 ORTHO05D007006 6.9e-35 150.6 107 68.2
CARHR264900 Cardamine hirsuta HOM05D005755 ORTHO05D007006 9.0e-35 150.2 107 69.2
Sc05g0001890 Simmondsia chinensis HOM05D005755 ORTHO05D007006 9.0e-35 150.2 109 69.7
CANSAT11G0923 Cannabis sativa HOM05D005755 ORTHO05D007006 1.2e-34 149.8 110 70.0
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 1.2e-34 149.8 111 68.5
THA.LOC104799357 Tarenaya hassleriana HOM05D005755 ORTHO05D007006 1.5e-34 149.4 110 67.3
BraA02t06267Z Brassica rapa HOM05D005755 ORTHO05D007006 2.0e-34 149.1 107 69.2
Peaxi162Scf00111g00718 Petunia axillaris HOM05D005755 ORTHO05D007006 2.0e-34 149.1 113 69.9
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 2.0e-34 149.1 139 61.9
BcaB08g35550 Brassica carinata HOM05D005755 ORTHO05D007006 2.6e-34 148.7 101 71.3
Gohir.D01G118000 Gossypium hirsutum HOM05D005755 ORTHO05D007006 3.4e-34 148.3 130 63.1
Nitab4.5_0000061g0170 Nicotiana tabacum HOM05D005755 ORTHO05D007006 4.5e-34 147.9 114 68.4
Nitab4.5_0001721g0080 Nicotiana tabacum HOM05D005755 ORTHO05D007006 4.5e-34 147.9 114 68.4
AT5G51960 Arabidopsis thaliana HOM05D005755 ORTHO05D007006 5.9e-34 147.5 106 68.9
TWI15G0398 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 5.9e-34 147.5 108 69.4
EL10Ac3g06003 Beta vulgaris HOM05D005755 ORTHO05D007006 7.6e-34 147.1 107 68.2
Psat1g119080 Pisum sativum HOM05D005755 ORTHO05D007006 7.6e-34 147.1 107 67.3
Cfa019629 Carpinus fangiana HOM05D005755 ORTHO05D007006 1.3e-33 146.4 108 69.4
HPP92_016041 Vanilla planifolia HOM05D005755 ORTHO05D007006 1.3e-33 146.4 110 68.2
VMungo0251G2378 Vigna mungo HOM05D001210 ORTHO05D001036 1.3e-33 146.4 104 72.1
Ah.04g160050 Amaranthus hybridus HOM05D005755 ORTHO05D007006 2.2e-33 145.6 105 70.5
EL10Ac6g13227 Beta vulgaris HOM05D005755 ORTHO05D007006 2.2e-33 145.6 107 68.2
Oeu057236.1 Olea europaea HOM05D005755 ORTHO05D007006 2.2e-33 145.6 95 75.8
EL10Ac7g15953 Beta vulgaris HOM05D005755 ORTHO05D007006 2.9e-33 145.2 107 68.2
Aa31LG7G12880 Aethionema arabicum HOM05D005755 ORTHO05D007006 3.8e-33 144.8 109 67.0
ATR1096G048 Amborella trichopoda HOM05D005755 ORTHO05D007006 3.8e-33 144.8 106 68.9
Lalb_Chr07g0186081 Lupinus albus HOM05D005755 ORTHO05D007006 3.8e-33 144.8 110 68.2
Sopen07g033930 Solanum pennellii HOM05D005755 ORTHO05D007006 3.8e-33 144.8 114 65.8
TWI38G1562 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 3.8e-33 144.8 107 69.2
AL8G32330 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 6.5e-33 144.1 106 67.9
Oeu017232.1 Olea europaea HOM05D005755 ORTHO05D007006 6.5e-33 144.1 95 73.7
Solyc07g065720.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 6.5e-33 144.1 113 66.4
AUR62037483 Chenopodium quinoa HOM05D005755 ORTHO05D007006 8.5e-33 143.7 110 69.1
AUR62004768 Chenopodium quinoa HOM05D005755 ORTHO05D007006 1.1e-32 143.3 107 68.2
Lj4g0006534 Lotus japonicus HOM05D005755 ORTHO05D007006 1.1e-32 143.3 109 68.8
PGSC0003DMG400022164 Solanum tuberosum HOM05D005755 ORTHO05D007006 1.1e-32 143.3 114 64.9
Sabra08G0030600 Salix brachista HOM05D005755 ORTHO05D007006 1.9e-32 142.5 108 68.5
A10p09750 Brassica napus HOM05D005755 ORTHO05D007006 3.2e-32 141.7 101 68.3
Migut.F01798 Erythranthe guttata HOM05D005755 ORTHO05D007006 4.2e-32 141.4 100 74.0
BcaB05g23952 Brassica carinata HOM05D005755 ORTHO05D007006 5.5e-32 141.0 107 64.5
AL8G26290 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 7.2e-32 140.6 104 67.3
BcaC04g20616 Brassica carinata HOM05D005755 ORTHO05D007006 7.2e-32 140.6 101 68.3
C09p41470 Brassica napus HOM05D005755 ORTHO05D007006 7.2e-32 140.6 101 68.3
BolC9t57024H Brassica oleracea HOM05D005755 ORTHO05D007006 7.2e-32 140.6 101 68.3
Carub.0008s1205 Capsella rubella HOM05D005755 ORTHO05D007006 7.2e-32 140.6 104 66.3
EL10Ac7g17935 Beta vulgaris HOM05D005755 ORTHO05D007006 9.3e-32 140.2 99 69.7
BraA10t43055Z Brassica rapa HOM05D005755 ORTHO05D007006 9.3e-32 140.2 101 67.3
Sopen04g020610 Solanum pennellii HOM05D005755 ORTHO05D007006 1.6e-31 139.4 114 64.9
arahy.Tifrunner.gnm1.ann1.FL0JYU Arachis hypogaea HOM05D005755 ORTHO05D007006 2.7e-31 138.7 107 66.4
arahy.Tifrunner.gnm1.ann1.QA5RE0 Arachis hypogaea HOM05D005755 ORTHO05D007006 2.7e-31 138.7 107 66.4
CDE10G1261 Ceratophyllum demersum HOM05D005755 ORTHO05D007006 4.6e-31 137.9 108 63.0
CAN.G79.77 Capsicum annuum HOM05D005755 ORTHO05D007006 6.1e-31 137.5 103 68.0
Solyc04g049970.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 7.9e-31 137.1 113 64.6
Potri.010G217300 Populus trichocarpa HOM05D005755 ORTHO05D007006 2.3e-30 135.6 104 67.3
SalBow1G5334 Salvia bowleyana HOM05D005755 ORTHO05D007006 2.3e-30 135.6 98 67.3
SalBow1G7067 Salvia bowleyana HOM05D005755 ORTHO05D007006 2.3e-30 135.6 98 67.3
SalBow3G2244 Salvia bowleyana HOM05D005755 ORTHO05D007006 6.7e-30 134.0 98 66.3
SalBow3G3619 Salvia bowleyana HOM05D005755 ORTHO05D007006 6.7e-30 134.0 98 66.3
PSO675G6920 Papaver somniferum HOM05D005755 ORTHO05D007006 1.5e-29 132.9 104 63.5
EL10Ac5g11654 Beta vulgaris HOM05D005755 ORTHO05D007006 1.9e-29 132.5 96 68.8
SGA_v2.0_scaffold71G24037 Striga asiatica HOM05D005755 ORTHO05D007006 1.4e-27 126.3 99 62.6
Os11g0133900 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 6.9e-27 124.0 97 64.9
Zm00001eb235420 Zea mays HOM05D005755 ORTHO05D007006 1.2e-26 123.2 102 63.7
unitig_8.g3685 Utricularia gibba HOM05D005755 ORTHO05D007006 1.3e-25 119.8 100 64.0
Zm00001eb163500 Zea mays HOM05D005755 ORTHO05D007006 3.8e-25 118.2 102 60.8
SEGI_41538 Sequoiadendron giganteum HOM05D005755 ORTHO05D007006 5.0e-25 117.9 104 55.8
Glyma.19G087500 Glycine max HOM05D005755 ORTHO05D007006 5.1e-22 107.8 101 59.4
Os12g0131266 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 9.7e-21 103.6 81 65.4
TPR.G31353 Trifolium pratense HOM05D005755 ORTHO05D007006 1.7e-20 102.8 56 85.7
SMO207G0003 Selaginella moellendorffii HOM05D005755 ORTHO05D007006 1.1e-19 100.1 97 54.6
AagrBONN_evm.TU.Sc2ySwM_362.2659 Anthoceros agrestis HOM05D005755 ORTHO05D007006 8.5e-17 90.5 101 45.5
Lj3g0006677 Lotus japonicus HOM05D005755 ORTHO05D007006 1.2e-15 86.7 72 62.5
Mapoly0006s0175 Marchantia polymorpha HOM05D005755 ORTHO05D007006 1.2e-15 86.7 102 42.2
Haze_18895 Corylus avellana HOM05D005755 ORTHO05D007006 3.6e-15 85.1 85 56.5
A02p12030 Brassica napus HOM05D005755 ORTHO05D007006 6.1e-15 84.3 72 59.7
HanXRQChr14g0436521 Helianthus annuus HOM05D005755 ORTHO05D007006 1.4e-14 83.2 74 55.4
AL792U10010 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 3.0e-14 82.0 68 60.3
Prupe.2G218400 Prunus persica HOM05D005755 ORTHO05D007006 1.5e-13 79.7 112 49.1
Oeu057237.1 Olea europaea HOM05D005755 ORTHO05D007006 2.0e-13 79.3 61 62.3
Pp3c3_10790 Physcomitrium patens HOM05D005755 ORTHO05D007006 7.4e-13 77.4 99 42.4
Lj3g0023846 Lotus japonicus HOM05D005755 ORTHO05D007006 3.7e-12 75.1 71 57.7
ClCG08G001190 Citrullus lanatus HOM05D005755 ORTHO05D007006 2.5e-08 62.4 43 69.8
CBR_g23899 Chara braunii HOM05D005755 ORTHO05D007006 8.8e-06 53.9 103 33.0


User provided reference genes

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