Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 7.8e-95 350.5 186 100.0
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 3.6e-55 218.8 187 64.7
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 9.7e-53 210.7 189 63.0
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 9.7e-53 210.7 189 63.0
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 6.3e-52 208.0 185 60.0
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 8.2e-52 207.6 183 60.7
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 3.1e-51 205.7 189 64.0
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 5.3e-51 204.9 185 60.5
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 7.0e-51 204.5 186 59.7
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 1.5e-50 203.4 186 59.7
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 7.7e-50 201.1 185 61.1
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 1.7e-49 199.9 177 63.3
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 2.9e-49 199.1 191 62.3
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 3.8e-49 198.7 185 58.4
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 3.2e-48 195.7 185 58.4
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 4.2e-48 195.3 174 60.3
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 2.1e-47 193.0 174 60.3
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 1.0e-46 190.7 184 57.6
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 1.4e-46 190.3 185 59.5
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 1.8e-46 189.9 184 54.9
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.8e-46 189.9 186 55.4
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 6.7e-46 188.0 187 56.7
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.5e-45 186.8 186 56.5
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 2.0e-45 186.4 188 54.8
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 4.4e-45 185.3 186 60.8
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 7.4e-45 184.5 190 55.8
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 1.3e-44 183.7 183 60.1
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 2.2e-44 183.0 177 56.5
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 2.8e-44 182.6 183 56.3
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 8.2e-44 181.0 186 56.5
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 3.1e-43 179.1 188 55.9
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 3.5e-42 175.6 186 54.8
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.0e-41 174.1 190 53.7
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 2.9e-41 172.6 186 53.8
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 2.9e-41 172.6 206 48.5
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 2.9e-41 172.6 185 53.5
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 8.5e-41 171.0 172 57.0
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 5.5e-40 168.3 189 54.0
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 7.2e-40 167.9 185 53.0
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 6.1e-39 164.9 186 52.2
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 3.0e-38 162.5 185 50.8
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 8.8e-38 161.0 179 53.6
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 2.6e-37 159.5 193 53.9
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 2.6e-37 159.5 182 52.7
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 3.3e-37 159.1 176 53.4
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.3e-36 157.1 190 53.2
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 2.2e-36 156.4 147 60.5
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 2.2e-36 156.4 182 52.2
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 3.7e-36 155.6 187 48.1
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 8.3e-36 154.5 186 50.0
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 2.4e-35 152.9 192 52.6
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 3.1e-35 152.5 186 51.1
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 4.1e-35 152.1 188 47.3
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 4.1e-35 152.1 184 52.7
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 5.3e-35 151.8 197 49.2
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 7.0e-35 151.4 190 49.5
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 7.0e-35 151.4 185 52.4
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 3.5e-34 149.1 178 51.7
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 1.0e-33 147.5 178 49.4
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 1.7e-33 146.7 180 47.8
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 1.7e-33 146.7 190 47.4
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.2e-33 146.4 186 52.2
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 6.5e-33 144.8 181 48.6
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 1.1e-32 144.1 185 49.7
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 2.5e-32 142.9 160 55.0
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 4.2e-32 142.1 178 48.3
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 4.2e-32 142.1 180 47.2
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 9.4e-32 141.0 159 52.8
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.2e-31 140.6 183 50.8
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.1e-31 139.8 183 50.8
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 2.7e-31 139.4 189 46.6
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 2.7e-31 139.4 185 46.5
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 2.7e-31 139.4 179 46.4
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 4.7e-31 138.7 182 50.0
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 1.0e-30 137.5 180 48.9
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.4e-30 137.1 187 47.6
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 8.8e-30 134.4 186 47.3
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.2e-29 134.0 158 50.6
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 1.5e-29 133.7 180 45.0
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 1.3e-28 130.6 182 47.3
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 2.8e-28 129.4 175 46.9
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 3.7e-28 129.0 164 51.8
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 6.3e-28 128.3 194 44.8
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 8.3e-28 127.9 163 49.7
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 1.1e-27 127.5 179 43.6
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 2.4e-27 126.3 183 47.0
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 2.4e-27 126.3 184 47.8
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 3.1e-27 125.9 179 46.4
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 5.4e-27 125.2 185 47.0
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 5.4e-27 125.2 185 47.0
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 7.0e-27 124.8 183 46.4
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 9.1e-27 124.4 183 47.0
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 2.7e-26 122.9 183 47.0
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 2.7e-26 122.9 183 47.0
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 2.7e-26 122.9 190 42.6
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 3.5e-26 122.5 181 46.4
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 3.5e-26 122.5 184 45.7
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 3.5e-26 122.5 184 45.1
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 3.5e-26 122.5 184 45.1
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 3.5e-26 122.5 172 48.3
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 5.9e-26 121.7 184 46.2
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 5.9e-26 121.7 184 46.2
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 7.7e-26 121.3 184 44.6
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 7.7e-26 121.3 185 45.9
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 1.0e-25 120.9 185 46.5
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 1.3e-25 120.6 184 46.2
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 1.3e-25 120.6 184 46.2
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 1.3e-25 120.6 185 44.9
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 1.7e-25 120.2 190 44.2
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 2.3e-25 119.8 184 44.6
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 2.3e-25 119.8 184 44.6
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 2.3e-25 119.8 157 49.0
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.3e-25 119.8 185 43.2
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 3.8e-25 119.0 157 49.7
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 3.8e-25 119.0 184 46.7
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 5.0e-25 118.6 157 49.0
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 5.0e-25 118.6 184 43.5
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 1.9e-24 116.7 173 46.8
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 1.2e-23 114.0 174 45.4
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 8.0e-23 111.3 85 64.7
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.4e-22 110.5 170 42.4
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 6.8e-22 108.2 168 42.3
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.5e-21 107.1 170 41.8
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 2.0e-21 106.7 175 43.4
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 2.8e-20 102.8 182 37.9
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 6.3e-20 101.7 180 41.1
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 6.3e-20 101.7 180 41.1
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 8.3e-20 101.3 180 40.6
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 3.1e-19 99.4 180 39.4
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 3.1e-19 99.4 180 40.0
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 3.1e-19 99.4 180 40.0
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 5.4e-19 98.6 180 39.4
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 2.0e-18 96.7 176 40.9
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 2.7e-18 96.3 180 38.9
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 7.8e-18 94.7 174 40.2
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 1.0e-17 94.4 176 36.9
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 2.3e-17 93.2 180 37.2
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 8.6e-17 91.3 182 39.0
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 5.6e-16 88.6 174 38.5
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 7.3e-16 88.2 198 29.3
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 1.6e-15 87.0 185 34.6
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 4.7e-15 85.5 194 34.0
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.5e-13 80.5 178 34.3
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 5.8e-13 78.6 138 42.0
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 2.4e-11 73.2 177 29.4
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 2.7e-10 69.7 59 55.9
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 2.7e-10 69.7 46 73.9
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 4.6e-10 68.9 186 30.1
CDE02G3054 Ceratophyllum demersum HOM05D001966 ORTHO05D011119 6.0e-10 68.6 88 44.3
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 3.0e-09 66.2 178 33.1
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 5.0e-09 65.5 188 33.0
Zm00001eb178020 Zea mays HOM05D004507 ORTHO05D004874 7.3e-08 61.6 187 24.6
SEGI_00160 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 2.1e-07 60.1 191 30.4
SHI24759 Sapria himalayana HOM05D016562 ORTHO05D004874 2.8e-07 59.7 41 68.3
Zm00001eb233860 Zea mays HOM05D004507 ORTHO05D004874 6.2e-07 58.5 55 49.1
unitig_37.g12687 Utricularia gibba HOM05D004507 ORTHO05D004874 8.0e-07 58.2 63 47.6
Os06g0653200 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.4e-06 57.4 160 29.4
SEGI_14977 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.4e-06 57.4 180 31.7
HPP92_015856 Vanilla planifolia HOM05D004507 ORTHO05D004874 2.3e-06 56.6 117 35.0
SEGI_00453 Sequoiadendron giganteum HOM05D001624 ORTHO05D001530 4.0e-06 55.8 157 29.3
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 8.9e-06 54.7 180 30.6
SEGI_30051 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 8.9e-06 54.7 138 31.9


User provided reference genes

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