Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0155F.1_g068550 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 2.6e-83 312.0 159 100.0
Hma1.2p1_0155F.1_g068540 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 5.7e-62 241.1 150 86.0
Dinv17375 Davidia involucrata HOM05D007006 ORTHO05D008925 2.8e-61 238.8 164 77.4
Actinidia07621 Actinidia chinensis HOM05D007006 ORTHO05D008925 5.4e-60 234.6 160 77.5
CSS0027125 Camellia sinensis var. sinensis HOM05D007006 ORTHO05D008925 1.6e-59 233.0 161 75.2
TAR626G0127 Trochodendron aralioides HOM05D007006 ORTHO05D008925 6.6e-58 227.6 160 72.5
GSVIVG01021151001 Vitis vinifera HOM05D007006 ORTHO05D008925 1.6e-56 223.0 161 70.8
Oeu001091.1 Olea europaea HOM05D007006 ORTHO05D008925 1.4e-55 219.9 160 71.9
Atru.chr10.1745 Acer truncatum HOM05D007006 ORTHO05D008925 2.3e-55 219.2 163 69.9
CiPaw.10G055000 Carya illinoinensis HOM05D007006 ORTHO05D008925 2.3e-55 219.2 163 72.4
Nn1g04307 Nelumbo nucifera HOM05D007006 ORTHO05D008925 8.9e-55 217.2 150 74.0
Eucgr.E03165 Eucalyptus grandis HOM05D007006 ORTHO05D008925 1.2e-54 216.9 161 70.8
Prupe.4G056000 Prunus persica HOM05D007006 ORTHO05D008925 1.2e-54 216.9 162 71.6
Gohir.D10G029800 Gossypium hirsutum HOM05D007006 ORTHO05D008925 2.6e-54 215.7 163 68.7
Gorai.011G031700 Gossypium raimondii HOM05D007006 ORTHO05D008925 2.6e-54 215.7 163 68.7
Gohir.A10G029300 Gossypium hirsutum HOM05D007006 ORTHO05D008925 3.4e-54 215.3 163 68.7
Potri.011G062200 Populus trichocarpa HOM05D007006 ORTHO05D008925 3.4e-54 215.3 157 70.7
Duzib160G0118 Durio zibethinus HOM05D007006 ORTHO05D008925 5.7e-54 214.5 163 68.7
MD10G1285600 Malus domestica HOM05D007006 ORTHO05D008925 5.7e-54 214.5 162 71.6
Thhalv10026439m.g Eutrema salsugineum HOM05D007006 ORTHO05D008925 7.5e-54 214.2 161 70.2
Sopen02g022230 Solanum pennellii HOM05D007006 ORTHO05D008925 9.8e-54 213.8 151 74.2
PGSC0003DMG400010717 Solanum tuberosum HOM05D007006 ORTHO05D008925 9.8e-54 213.8 151 74.2
Manes.16G034601 Manihot esculenta HOM05D007006 ORTHO05D008925 1.7e-53 213.0 158 71.5
MSTRG.7381 Avicennia marina HOM05D007006 ORTHO05D008925 2.2e-53 212.6 165 66.1
Migut.M01077 Erythranthe guttata HOM05D007006 ORTHO05D008925 2.2e-53 212.6 157 71.3
Nitab4.5_0000376g0100 Nicotiana tabacum HOM05D007006 ORTHO05D008925 2.2e-53 212.6 151 73.5
PSO210G2152 Papaver somniferum HOM05D007006 ORTHO05D008925 2.9e-53 212.2 160 68.8
Solyc02g077310.4 Solanum lycopersicum HOM05D007006 ORTHO05D008925 3.7e-53 211.8 151 73.5
Rhsim02G0152900 Rhododendron simsii HOM05D007006 ORTHO05D008925 4.9e-53 211.5 159 73.6
Thecc.06G177200 Theobroma cacao HOM05D007006 ORTHO05D008925 4.9e-53 211.5 167 67.1
Haze_06320 Corylus avellana HOM05D007006 ORTHO05D008925 8.3e-53 210.7 163 69.9
ATR0602G073 Amborella trichopoda HOM05D007006 ORTHO05D008925 1.4e-52 209.9 158 69.6
CsaV3_1G012640 Cucumis sativus L. HOM05D007006 ORTHO05D008925 1.4e-52 209.9 163 68.1
ECA248G3223 Erigeron canadensis HOM05D007006 ORTHO05D008925 1.4e-52 209.9 160 67.5
TPR.G31857 Trifolium pratense HOM05D007006 ORTHO05D008925 1.4e-52 209.9 160 68.1
Zm00001eb122370 Zea mays HOM05D007006 ORTHO05D008925 1.4e-52 209.9 148 74.3
TWI63G0680 Tripterygium wilfordii HOM05D007006 ORTHO05D008925 2.4e-52 209.1 150 74.0
AL7G35820 Arabidopsis lyrata HOM05D007006 ORTHO05D008925 4.1e-52 208.4 163 66.3
AT4G18460 Arabidopsis thaliana HOM05D007006 ORTHO05D008925 1.2e-51 206.8 150 70.7
Carub.0007s2277 Capsella rubella HOM05D007006 ORTHO05D008925 1.2e-51 206.8 158 67.7
Os01g0242500 Oryza sativa ssp. japonica HOM05D007006 ORTHO05D008925 1.2e-51 206.8 167 67.7
THA.LOC104798412 Tarenaya hassleriana HOM05D007006 ORTHO05D008925 1.2e-51 206.8 163 67.5
Sabra11G0042600 Salix brachista HOM05D007006 ORTHO05D008925 2.0e-51 206.1 170 66.5
Sabra11G0044100 Salix brachista HOM05D007006 ORTHO05D008925 2.0e-51 206.1 170 66.5
Phvul.006G179400 Phaseolus vulgaris HOM05D007006 ORTHO05D008925 2.7e-51 205.7 156 67.3
COL.COLO4_31384 Corchorus olitorius HOM05D007006 ORTHO05D008976 3.5e-51 205.3 176 63.6
arahy.Tifrunner.gnm1.ann1.PE4VQR Arachis hypogaea HOM05D000109 ORTHO05D000965 4.6e-51 204.9 160 66.9
CARHR225300 Cardamine hirsuta HOM05D007006 ORTHO05D008925 5.9e-51 204.5 150 69.3
FAN21G1832 Fragaria x ananassa HOM05D007006 ORTHO05D008925 5.9e-51 204.5 154 71.4
RcHm_v2.0_Chr5g0009821 Rosa chinensis HOM05D007006 ORTHO05D008925 5.9e-51 204.5 163 68.7
Sed0005765 Sechium edule HOM05D007006 ORTHO05D008925 5.9e-51 204.5 148 70.3
CDE02G4743 Ceratophyllum demersum HOM05D007006 ORTHO05D008925 7.8e-51 204.1 155 69.0
Nitab4.5_0011727g0040 Nicotiana tabacum HOM05D007006 ORTHO05D008925 7.8e-51 204.1 159 69.2
SalBow8G1160 Salvia bowleyana HOM05D007006 ORTHO05D008925 7.8e-51 204.1 150 70.0
BcaC09g51505 Brassica carinata HOM05D007006 ORTHO05D008925 1.7e-50 203.0 164 65.9
BraA01t00989Z Brassica rapa HOM05D007006 ORTHO05D008925 1.7e-50 203.0 150 69.3
Glyma.15G079600 Glycine max HOM05D007006 ORTHO05D008925 1.7e-50 203.0 151 68.9
HanXRQChr01g0008471 Helianthus annuus HOM05D007006 ORTHO05D008925 2.3e-50 202.6 162 66.0
VMungo0540G0068 Vigna mungo HOM05D007006 ORTHO05D008925 2.3e-50 202.6 160 66.2
Aa31LG6G1200 Aethionema arabicum HOM05D007006 ORTHO05D008925 2.9e-50 202.2 163 65.0
CAN.G79.66 Capsicum annuum HOM05D007006 ORTHO05D008925 2.9e-50 202.2 151 69.5
Lj6g0023400 Lotus japonicus HOM05D007006 ORTHO05D008925 3.9e-50 201.8 160 66.9
BolC1t01215H Brassica oleracea HOM05D007006 ORTHO05D008925 6.6e-50 201.1 151 69.5
Glyma.13G233500 Glycine max HOM05D007006 ORTHO05D008925 6.6e-50 201.1 151 68.2
Psat1g148320 Pisum sativum HOM05D007006 ORTHO05D008925 8.6e-50 200.7 151 68.9
CANSAT35G1771 Cannabis sativa HOM05D007006 ORTHO05D008925 1.5e-49 199.9 151 68.9
Sp7g15560 Schrenkiella parvula HOM05D007006 ORTHO05D008925 1.5e-49 199.9 163 65.6
Ca_11669_v3 Cicer arietinum L. HOM05D007006 ORTHO05D008925 1.9e-49 199.5 160 66.9
Sc05g0007280 Simmondsia chinensis HOM05D007006 ORTHO05D008925 1.9e-49 199.5 160 66.9
HPP92_002943 Vanilla planifolia HOM05D007006 ORTHO05D008925 2.5e-49 199.1 148 70.9
SEGI_08558 Sequoiadendron giganteum HOM05D007006 ORTHO05D008925 3.3e-49 198.7 148 70.3
MELO3C002631.2 Cucumis melo HOM05D007006 ORTHO05D008925 4.7e-48 194.9 165 66.1
Lj1A1197T80 Lonicera japonica HOM05D007006 ORTHO05D008925 4.7e-48 194.9 155 69.0
SGA_v2.0_scaffold309G48130 Striga asiatica HOM05D007006 ORTHO05D008925 5.8e-46 188.0 149 67.1
BcaNung05874 Brassica carinata HOM05D007006 ORTHO05D008925 7.5e-46 187.6 163 61.3
Medtr2g036040 Medicago truncatula HOM05D007006 ORTHO05D008925 1.1e-44 183.7 164 61.6
SGA_v2.0_scaffold309G48148 Striga asiatica HOM05D007006 ORTHO05D008925 9.2e-44 180.6 178 57.3
FvH4_3g08260 Fragaria vesca HOM05D007006 ORTHO05D008925 6.0e-43 177.9 136 69.9
Mapoly0096s0066 Marchantia polymorpha HOM05D007006 ORTHO05D008925 6.0e-43 177.9 148 64.9
FAN11G3635 Fragaria x ananassa HOM05D007006 ORTHO05D008925 2.3e-42 176.0 134 70.1
FAN16G3644 Fragaria x ananassa HOM05D007006 ORTHO05D008925 2.3e-42 176.0 134 70.1
SMO356G0615 Selaginella moellendorffii HOM05D007006 ORTHO05D008925 8.6e-42 174.1 156 58.3
CBR_g12914 Chara braunii HOM05D007006 ORTHO05D008925 1.5e-41 173.3 148 61.5
Cc02_g14310 Coffea canephora HOM05D007006 ORTHO05D008925 5.6e-41 171.4 138 66.7
AUR62031124 Chenopodium quinoa HOM05D007006 ORTHO05D008925 1.2e-40 170.2 146 61.6
Cpa.g.sc7.31 Carica papaya HOM05D007006 ORTHO05D008925 3.6e-40 168.7 134 67.2
ClCG03G007950 Citrullus lanatus HOM05D007006 ORTHO05D008925 3.6e-40 168.7 222 49.1
CBR_g28086 Chara braunii HOM05D007006 ORTHO05D008925 1.4e-39 166.8 148 58.1
Ciclev10016962m.g Citrus clementina HOM05D007006 ORTHO05D008925 4.0e-39 165.2 124 71.0
Eucgr.E02654 Eucalyptus grandis HOM05D007006 ORTHO05D008925 8.9e-39 164.1 124 70.2
AUR62014917 Chenopodium quinoa HOM05D007006 ORTHO05D008925 3.4e-38 162.2 146 59.6
A01p10430 Brassica napus HOM05D007006 ORTHO05D008925 5.8e-38 161.4 151 59.6
C01p12410 Brassica napus HOM05D007006 ORTHO05D008925 9.8e-38 160.6 152 58.6
Hund21193 Selenicereus undatus HOM05D007006 ORTHO05D008925 1.7e-37 159.8 139 64.0
Pp3c2_4790 Physcomitrium patens HOM05D007006 ORTHO05D008925 2.2e-37 159.5 134 60.4
RcHm_v2.0_Chr5g0007981 Rosa chinensis HOM05D007006 ORTHO05D008925 2.4e-36 156.0 123 68.3
MBI06_g25712_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 1.6e-35 153.3 98 77.6
PSO832G1055 Papaver somniferum HOM05D007006 ORTHO05D008925 1.7e-34 149.8 93 76.3
PGR042G2307 Punica granatum HOM05D007006 ORTHO05D008925 1.9e-33 146.4 94 72.3
Cfa000555 Carpinus fangiana HOM05D007006 ORTHO05D008925 1.6e-32 143.3 174 51.7
EL10Ac8g20473 Beta vulgaris HOM05D007006 ORTHO05D008925 1.1e-31 140.6 153 52.3
DCAR_004029 Daucus carota HOM05D007006 ORTHO05D008925 3.1e-31 139.0 92 73.9
Cre12.g542000 Chlamydomonas reinhardtii HOM05D007006 ORTHO05D008925 5.8e-30 134.8 157 48.4
Lsat_1_v5_gn_1_120360 Lactuca sativa HOM05D007006 ORTHO05D008925 4.9e-29 131.7 113 60.2
MCO06G160 Micromonas commoda HOM05D007006 ORTHO05D008925 6.0e-27 124.8 163 47.2
Peaxi162Scf00875g00318 Petunia axillaris HOM05D007006 ORTHO05D008925 2.1e-24 116.3 88 62.5
Haze_27122 Corylus avellana HOM05D007006 ORTHO05D008925 6.2e-24 114.8 162 39.5
PRCOL_00003508 Prasinoderma coloniale HOM05D007006 ORTHO05D008925 1.5e-22 110.2 148 43.2
CBR_g41520 Chara braunii HOM05D000019 ORTHO05D000002 4.2e-20 102.1 72 65.3
Lalb_Chr20g0121401 Lupinus albus HOM05D007006 ORTHO05D008925 1.6e-16 90.1 57 71.9
SGA_v2.0_scaffold309G48132 Striga asiatica HOM05D007006 ORTHO05D008925 3.6e-16 89.0 57 73.7
MBI06_g25714_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 9.3e-12 74.3 42 85.7
Actinidia39491 Actinidia chinensis HOM05D007006 ORTHO05D008925 4.3e-09 65.5 63 58.7


User provided reference genes

Program Settings