Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 1.3e-143 513.1 260 100.0
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 1.2e-106 390.2 260 75.8
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 2.2e-103 379.4 248 76.6
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 1.3e-98 363.6 260 70.0
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 3.6e-98 362.1 260 70.4
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 3.1e-97 359.0 260 68.8
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.5e-96 356.7 260 70.4
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 2.6e-96 355.9 261 70.5
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 2.6e-96 355.9 251 72.1
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 9.3e-94 347.4 253 69.2
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 2.1e-93 346.3 262 67.2
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 2.7e-93 345.9 261 67.0
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 6.0e-93 344.7 246 70.3
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 1.0e-92 344.0 264 68.2
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 1.8e-92 343.2 250 68.8
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 3.0e-92 342.4 260 65.0
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 5.1e-92 341.7 262 67.9
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 6.7e-92 341.3 260 67.3
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 8.7e-92 340.9 250 68.4
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 8.7e-92 340.9 250 68.4
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 8.7e-92 340.9 250 68.4
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 8.7e-92 340.9 260 66.9
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 8.7e-92 340.9 257 66.1
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 1.1e-91 340.5 252 67.1
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 1.5e-91 340.1 257 65.8
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.9e-91 339.7 255 68.6
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 2.5e-91 339.3 256 67.2
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.3e-91 339.0 250 68.0
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 3.3e-91 339.0 260 69.2
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 5.6e-91 338.2 229 71.6
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 9.6e-91 337.4 250 68.0
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 9.6e-91 337.4 250 68.0
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 9.6e-91 337.4 226 72.6
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 1.3e-90 337.0 261 66.3
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 1.6e-90 336.7 237 69.2
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.6e-90 336.7 273 64.8
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 2.1e-90 336.3 226 72.1
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 2.1e-90 336.3 260 66.9
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 3.7e-90 335.5 226 71.7
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 3.7e-90 335.5 238 70.6
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 3.7e-90 335.5 238 68.9
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 4.8e-90 335.1 264 65.9
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 4.8e-90 335.1 257 65.4
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 6.2e-90 334.7 223 73.1
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 6.2e-90 334.7 263 66.2
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 6.9e-89 331.3 212 73.6
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 1.5e-88 330.1 226 69.5
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 1.5e-88 330.1 260 64.6
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 2.0e-88 329.7 261 65.9
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 2.0e-88 329.7 262 65.6
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 2.6e-88 329.3 257 64.2
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 3.4e-88 328.9 219 71.7
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 4.5e-88 328.6 261 65.5
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 5.8e-88 328.2 226 70.4
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.7e-87 326.6 269 64.7
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 4.9e-87 325.1 208 73.6
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 1.1e-86 323.9 256 64.8
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 1.1e-86 323.9 241 67.2
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 1.4e-86 323.6 239 66.5
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 1.9e-86 323.2 262 63.4
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 2.4e-86 322.8 258 64.0
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 4.2e-86 322.0 233 66.5
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 1.6e-85 320.1 262 64.9
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 2.1e-85 319.7 226 67.7
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 2.7e-85 319.3 258 65.1
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 2.7e-85 319.3 258 65.1
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 4.6e-85 318.5 261 63.6
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 6.0e-85 318.2 263 62.4
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 7.9e-85 317.8 263 62.4
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 1.3e-84 317.0 245 64.5
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 1.8e-84 316.6 253 64.0
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 3.0e-84 315.8 236 67.4
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 3.9e-84 315.5 250 62.4
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 3.9e-84 315.5 237 65.4
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 5.1e-84 315.1 258 65.5
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 6.7e-84 314.7 211 69.7
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 8.7e-84 314.3 269 63.2
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 1.1e-83 313.9 248 64.5
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 1.1e-83 313.9 260 61.2
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 1.9e-83 313.2 236 66.1
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 2.5e-83 312.8 208 70.2
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 3.3e-83 312.4 262 64.1
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 5.6e-83 311.6 254 63.4
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 7.4e-83 311.2 255 62.0
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 7.4e-83 311.2 250 62.0
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 7.4e-83 311.2 297 56.2
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 1.3e-82 310.5 250 64.0
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 2.1e-82 309.7 250 61.6
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 2.1e-82 309.7 250 61.6
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 2.8e-82 309.3 256 61.7
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 2.8e-82 309.3 250 63.2
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 2.8e-82 309.3 210 73.8
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 3.7e-82 308.9 253 62.5
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 3.1e-81 305.8 252 61.9
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 3.1e-81 305.8 252 61.9
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 4.0e-81 305.4 250 62.4
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 1.2e-80 303.9 252 61.9
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 1.5e-80 303.5 244 63.1
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 2.0e-80 303.1 263 60.1
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 1.9e-78 296.6 251 62.2
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 5.5e-78 295.0 358 48.0
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 3.5e-77 292.4 256 59.8
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 4.6e-77 292.0 262 56.1
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.3e-76 290.4 238 64.3
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 4.1e-73 278.9 179 74.9
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 1.1e-70 270.8 323 49.8
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 1.4e-70 270.4 206 64.1
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.2e-66 256.5 282 52.8
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 5.5e-62 241.9 165 73.9
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 9.4e-62 241.1 219 58.4
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 2.3e-60 236.5 143 82.5
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 5.1e-60 235.3 256 52.3
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 3.2e-54 216.1 222 54.5
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 4.7e-53 212.2 199 52.3
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 6.7e-52 208.4 198 52.5
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 1.7e-50 203.8 152 66.4
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 8.2e-50 201.4 119 80.7
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 1.1e-49 201.1 187 51.3
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 3.0e-44 183.0 106 83.0
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 3.3e-43 179.5 197 45.2
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 1.8e-41 173.7 229 43.2
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 5.3e-41 172.2 161 54.0
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 9.1e-41 171.4 100 80.0
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 2.0e-40 170.2 100 82.0
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 2.2e-39 166.8 158 57.0
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 8.5e-39 164.9 100 79.0
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 5.5e-38 162.2 176 49.4
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 5.5e-38 162.2 97 80.4
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 9.4e-38 161.4 136 58.8
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 1.6e-32 144.1 87 80.5
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 2.0e-27 127.1 162 49.4
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 4.9e-26 122.5 109 52.3
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 1.8e-25 120.6 91 62.6
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 2.7e-24 116.7 194 39.7
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 2.7e-24 116.7 100 53.0
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 2.3e-23 113.6 72 73.6
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 2.3e-23 113.6 72 73.6
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 2.3e-23 113.6 72 73.6
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 2.3e-23 113.6 72 73.6
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 8.6e-23 111.7 71 73.2
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 1.1e-22 111.3 69 73.9
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 3.6e-21 106.3 80 56.2
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 6.1e-21 105.5 206 32.0
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 1.4e-20 104.4 102 55.9
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 1.9e-14 84.0 81 53.1
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 9.5e-14 81.6 180 31.1
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 1.1e-12 78.2 105 46.7
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 1.2e-11 74.7 46 71.7
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 1.2e-11 74.7 73 45.2
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 1.5e-11 74.3 51 70.6
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 1.5e-11 74.3 51 70.6
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 1.3e-10 71.2 42 83.3
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 2.9e-10 70.1 124 29.0
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 1.1e-09 68.2 56 58.9
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 5.4e-09 65.9 83 41.0
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 1.6e-08 64.3 55 56.4
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 1.0e-07 61.6 42 66.7
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 1.0e-07 61.6 47 61.7
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 1.7e-07 60.8 84 39.3
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 3.9e-07 59.7 40 65.0
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 3.9e-07 59.7 40 65.0
Medtr1g097880 Medicago truncatula HOM05D004920 ORTHO05D005998 1.1e-06 58.2 85 42.4


User provided reference genes

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