Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 3.3e-49 198.0 93 100.0
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 8.3e-29 130.2 76 80.3
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 8.3e-29 130.2 76 80.3
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 8.3e-29 130.2 76 80.3
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 8.3e-29 130.2 76 80.3
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 1.1e-28 129.8 82 72.0
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 1.9e-28 129.0 86 69.8
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 1.9e-28 129.0 83 69.9
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 1.9e-28 129.0 76 78.9
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 2.4e-28 128.6 84 69.0
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 2.4e-28 128.6 82 72.0
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 3.2e-28 128.3 82 70.7
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 3.2e-28 128.3 76 78.9
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 5.4e-28 127.5 76 77.6
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 5.4e-28 127.5 79 72.2
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 5.4e-28 127.5 76 76.3
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 5.4e-28 127.5 82 70.7
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 7.1e-28 127.1 82 69.5
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 7.1e-28 127.1 76 77.6
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 7.1e-28 127.1 82 70.7
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 7.1e-28 127.1 76 77.6
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 7.1e-28 127.1 76 77.6
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 7.1e-28 127.1 76 77.6
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 7.1e-28 127.1 85 67.1
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 9.2e-28 126.7 76 76.3
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 9.2e-28 126.7 76 76.3
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 9.2e-28 126.7 76 76.3
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 1.2e-27 126.3 82 69.5
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.2e-27 126.3 82 69.5
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 1.6e-27 125.9 76 76.3
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 2.1e-27 125.6 76 76.3
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 2.7e-27 125.2 76 77.6
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 3.5e-27 124.8 76 75.0
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 3.5e-27 124.8 82 70.7
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 3.5e-27 124.8 76 75.0
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 3.5e-27 124.8 86 66.3
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 3.5e-27 124.8 85 65.9
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 4.6e-27 124.4 76 75.0
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 4.6e-27 124.4 76 75.0
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 4.6e-27 124.4 76 75.0
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 6.0e-27 124.0 82 67.1
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 6.0e-27 124.0 82 67.1
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 6.0e-27 124.0 82 69.5
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 6.0e-27 124.0 82 69.5
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 6.0e-27 124.0 82 69.5
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 6.0e-27 124.0 76 73.7
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 6.0e-27 124.0 76 73.7
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 6.0e-27 124.0 76 75.0
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 6.0e-27 124.0 82 69.5
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 6.0e-27 124.0 82 69.5
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 7.8e-27 123.6 82 68.3
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 7.8e-27 123.6 82 68.3
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 1.0e-26 123.2 76 76.3
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 1.0e-26 123.2 76 75.0
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.0e-26 123.2 76 73.7
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 1.0e-26 123.2 76 75.0
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 1.0e-26 123.2 86 62.8
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 1.3e-26 122.9 82 65.9
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 1.3e-26 122.9 82 65.9
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 1.3e-26 122.9 82 67.1
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 1.3e-26 122.9 82 65.9
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 1.3e-26 122.9 82 65.9
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 1.3e-26 122.9 82 65.9
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 1.3e-26 122.9 82 65.9
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.3e-26 122.9 82 69.5
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 1.3e-26 122.9 82 68.3
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 1.3e-26 122.9 82 65.9
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 1.7e-26 122.5 76 72.4
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 1.7e-26 122.5 76 75.0
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 2.3e-26 122.1 82 68.3
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 2.3e-26 122.1 82 68.3
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 2.3e-26 122.1 82 68.3
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 2.3e-26 122.1 82 68.3
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.3e-26 122.1 76 72.4
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 2.3e-26 122.1 82 68.3
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 2.3e-26 122.1 82 65.9
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 2.3e-26 122.1 76 75.0
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 2.3e-26 122.1 82 68.3
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 2.3e-26 122.1 82 68.3
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 3.0e-26 121.7 82 67.1
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 3.0e-26 121.7 82 64.6
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 3.9e-26 121.3 76 75.0
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 3.9e-26 121.3 76 72.4
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 3.9e-26 121.3 76 73.7
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.9e-26 121.3 76 73.7
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.9e-26 121.3 76 73.7
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.9e-26 121.3 76 73.7
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 3.9e-26 121.3 76 73.7
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 3.9e-26 121.3 82 67.1
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 6.6e-26 120.6 82 67.1
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 8.6e-26 120.2 76 73.7
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 8.6e-26 120.2 83 66.3
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 8.6e-26 120.2 83 66.3
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 8.6e-26 120.2 85 63.5
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 8.6e-26 120.2 83 66.3
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 8.6e-26 120.2 76 73.7
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 1.1e-25 119.8 76 72.4
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 1.1e-25 119.8 76 73.7
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.9e-25 119.0 82 65.9
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 1.9e-25 119.0 76 73.7
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.9e-25 119.0 76 73.7
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 2.5e-25 118.6 86 61.6
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 2.5e-25 118.6 82 65.9
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 2.5e-25 118.6 82 65.9
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 2.5e-25 118.6 82 65.9
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 2.5e-25 118.6 82 65.9
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 2.5e-25 118.6 82 65.9
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 3.3e-25 118.2 82 65.9
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 3.3e-25 118.2 83 65.1
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 3.3e-25 118.2 86 60.5
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 3.3e-25 118.2 82 65.9
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 4.3e-25 117.9 76 73.7
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 4.3e-25 117.9 76 73.7
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 4.3e-25 117.9 76 72.4
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 4.3e-25 117.9 76 69.7
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 4.3e-25 117.9 83 65.1
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 5.6e-25 117.5 76 72.4
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 1.2e-24 116.3 76 71.1
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 1.6e-24 115.9 76 68.4
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 2.1e-24 115.5 82 65.9
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 2.8e-24 115.2 85 61.2
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 2.8e-24 115.2 76 71.1
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.6e-24 114.8 72 73.6
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 3.6e-24 114.8 82 63.4
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 4.7e-24 114.4 82 62.2
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 6.2e-24 114.0 76 69.7
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 8.1e-24 113.6 85 60.0
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 5.8e-22 107.5 79 64.6
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 3.5e-19 98.2 66 71.2
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 3.0e-18 95.1 58 75.9
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 1.1e-09 66.6 35 85.7


User provided reference genes

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