Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0152F.1_g067640 Hydrangea macrophylla HOM05D006013 ORTHO05D007383 1.8e-28 128.6 68 100.0
Hma1.2p1_0152F.1_g067630 Hydrangea macrophylla HOM05D006013 ORTHO05D007383 5.3e-25 117.1 60 100.0
Dinv37019 Davidia involucrata HOM05D006013 ORTHO05D007383 8.0e-21 103.2 60 86.7
Manes.09G140900 Manihot esculenta HOM05D006013 ORTHO05D007383 5.3e-17 90.5 61 73.8
CSS0008476 Camellia sinensis var. sinensis HOM05D006013 ORTHO05D007383 2.7e-16 88.2 64 76.6
Sabra19G0043600 Salix brachista HOM05D006013 ORTHO05D007383 2.7e-16 88.2 61 73.8
Peaxi162Scf00463g00021 Petunia axillaris HOM05D006013 ORTHO05D007383 4.5e-16 87.4 60 73.3
Atru.chr2.1392 Acer truncatum HOM05D006013 ORTHO05D007383 5.9e-16 87.0 60 71.7
Thecc.05G250300 Theobroma cacao HOM05D006013 ORTHO05D007383 5.9e-16 87.0 60 75.0
Lj1A1136T62 Lonicera japonica HOM05D006013 ORTHO05D007383 1.7e-15 85.5 70 67.1
Nitab4.5_0000626g0030 Nicotiana tabacum HOM05D006013 ORTHO05D007383 3.8e-15 84.3 60 70.0
COL.COLO4_36081 Corchorus olitorius HOM05D006013 ORTHO05D007383 6.5e-15 83.6 61 73.8
Potri.013G057700 Populus trichocarpa HOM05D006013 ORTHO05D007383 6.5e-15 83.6 60 71.7
Gohir.A11G235800 Gossypium hirsutum HOM05D006013 ORTHO05D007383 8.5e-15 83.2 61 73.8
Gohir.D11G246700 Gossypium hirsutum HOM05D006013 ORTHO05D007383 8.5e-15 83.2 61 73.8
Gorai.007G262600 Gossypium raimondii HOM05D006013 ORTHO05D007383 8.5e-15 83.2 61 73.8
Nitab4.5_0000394g0050 Nicotiana tabacum HOM05D006013 ORTHO05D007383 8.5e-15 83.2 60 68.3
Sabra19G0046900 Salix brachista HOM05D006013 ORTHO05D007383 1.9e-14 82.0 60 71.7
TAR623G1171 Trochodendron aralioides HOM05D006013 ORTHO05D007383 1.9e-14 82.0 60 70.0
Duzib106G1826 Durio zibethinus HOM05D006013 ORTHO05D007383 2.5e-14 81.6 62 69.4
vmacro09136 Vaccinium macrocarpon HOM05D006013 ORTHO05D007383 2.5e-14 81.6 59 69.5
DCAR_013685 Daucus carota HOM05D006013 ORTHO05D007383 3.2e-14 81.3 60 73.3
Cpa.g.sc51.125 Carica papaya HOM05D006013 ORTHO05D007383 4.2e-14 80.9 60 68.3
Duzib177G0997 Durio zibethinus HOM05D006013 ORTHO05D007383 4.2e-14 80.9 61 72.1
Rhsim04G0092500 Rhododendron simsii HOM05D006013 ORTHO05D007383 5.5e-14 80.5 53 75.5
Nn7g35862 Nelumbo nucifera HOM05D006013 ORTHO05D007383 7.2e-14 80.1 60 68.3
Sabra13G0051400 Salix brachista HOM05D006013 ORTHO05D007383 7.2e-14 80.1 61 67.2
Medtr7g085670 Medicago truncatula HOM05D006013 ORTHO05D007383 9.4e-14 79.7 61 72.1
MSTRG.26068 Avicennia marina HOM05D006013 ORTHO05D007383 1.2e-13 79.3 56 69.6
CiPaw.09G002300 Carya illinoinensis HOM05D006013 ORTHO05D007383 1.2e-13 79.3 61 67.2
SalBow1G1671 Salvia bowleyana HOM05D006013 ORTHO05D007383 1.2e-13 79.3 59 71.2
Actinidia17301 Actinidia chinensis HOM05D006013 ORTHO05D007383 2.7e-13 78.2 61 68.9
Phvul.001G111200 Phaseolus vulgaris HOM05D006013 ORTHO05D007383 2.7e-13 78.2 61 70.5
Cc06_g23030 Coffea canephora HOM05D006013 ORTHO05D007383 3.6e-13 77.8 59 67.8
Glyma.16G040700 Glycine max HOM05D006013 ORTHO05D007383 4.7e-13 77.4 61 70.5
Lsat_1_v5_gn_6_37360 Lactuca sativa HOM05D006013 ORTHO05D007383 4.7e-13 77.4 60 63.3
Prupe.7G004600 Prunus persica HOM05D006013 ORTHO05D007383 4.7e-13 77.4 60 68.3
Potri.019G035200 Populus trichocarpa HOM05D006013 ORTHO05D007383 8.0e-13 76.6 60 65.0
Sc25g0004990 Simmondsia chinensis HOM05D006013 ORTHO05D007383 8.0e-13 76.6 61 63.9
QL07p018334 Quercus lobata HOM05D006013 ORTHO05D007383 1.0e-12 76.3 59 69.5
Glyma.19G112500 Glycine max HOM05D006013 ORTHO05D007383 1.4e-12 75.9 61 68.9
HanXRQChr02g0054551 Helianthus annuus HOM05D006013 ORTHO05D007383 1.4e-12 75.9 60 63.3
MD14G1002900 Malus domestica HOM05D006013 ORTHO05D007383 2.3e-12 75.1 59 66.1
Ca_08269_v3 Cicer arietinum L. HOM05D006013 ORTHO05D007383 3.0e-12 74.7 61 67.2
PSO384G2178 Papaver somniferum HOM05D006013 ORTHO05D007383 4.0e-12 74.3 57 63.2
AL3G13780 Arabidopsis lyrata HOM05D006013 ORTHO05D007383 5.2e-12 73.9 60 61.7
Carub.0003s0312 Capsella rubella HOM05D006013 ORTHO05D007383 5.2e-12 73.9 60 65.0
PGR142G0352 Punica granatum HOM05D006013 ORTHO05D007383 5.2e-12 73.9 61 67.2
TWI60G0250 Tripterygium wilfordii HOM05D006013 ORTHO05D007383 5.2e-12 73.9 60 63.3
Eucgr.K01500 Eucalyptus grandis HOM05D006013 ORTHO05D007383 6.8e-12 73.6 57 66.7
Thhalv10021141m.g Eutrema salsugineum HOM05D006013 ORTHO05D007383 6.8e-12 73.6 59 64.4
Lj1g0017420 Lotus japonicus HOM05D006013 ORTHO05D007383 6.8e-12 73.6 61 63.9
Ciclev10021129m.g Citrus clementina HOM05D006013 ORTHO05D007383 8.8e-12 73.2 51 70.6
PSO339G6099 Papaver somniferum HOM05D006013 ORTHO05D007383 1.5e-11 72.4 59 62.7
Hund19233 Selenicereus undatus HOM05D006013 ORTHO05D007383 1.5e-11 72.4 54 64.8
Haze_19424 Corylus avellana HOM05D006013 ORTHO05D007383 2.0e-11 72.0 63 65.1
Sed0009892 Sechium edule HOM05D006013 ORTHO05D007383 2.0e-11 72.0 61 67.2
Aa31LG5G14470 Aethionema arabicum HOM05D006013 ORTHO05D007383 2.6e-11 71.6 60 60.0
AT3G03890 Arabidopsis thaliana HOM05D006013 ORTHO05D007383 3.4e-11 71.2 60 61.7
CARHR078010 Cardamine hirsuta HOM05D006013 ORTHO05D007383 3.4e-11 71.2 61 63.9
MD12G1004200 Malus domestica HOM05D006013 ORTHO05D007383 3.4e-11 71.2 58 63.8
THA.LOC104820775 Tarenaya hassleriana HOM05D006013 ORTHO05D007383 3.4e-11 71.2 61 63.9
Lsat_1_v5_gn_1_59740 Lactuca sativa HOM05D006013 ORTHO05D007383 4.4e-11 70.9 60 61.7
BraA05t23090Z Brassica rapa HOM05D006013 ORTHO05D007383 5.7e-11 70.5 60 61.7
ECA248G0640 Erigeron canadensis HOM05D006013 ORTHO05D007383 7.5e-11 70.1 60 60.0
Migut.K00008 Erythranthe guttata HOM05D006013 ORTHO05D007383 7.5e-11 70.1 58 70.7
TPR.G5910 Trifolium pratense HOM05D006013 ORTHO05D007383 7.5e-11 70.1 63 65.1
GSVIVG01033407001 Vitis vinifera HOM05D006013 ORTHO05D007383 7.5e-11 70.1 58 62.1
arahy.Tifrunner.gnm1.ann1.3D4EN7 Arachis hypogaea HOM05D006013 ORTHO05D007383 9.8e-11 69.7 61 63.9
arahy.Tifrunner.gnm1.ann1.779YCA Arachis hypogaea HOM05D006013 ORTHO05D007383 9.8e-11 69.7 61 63.9
Hund24832 Selenicereus undatus HOM05D006013 ORTHO05D007383 9.8e-11 69.7 61 59.0
Cfa016446 Carpinus fangiana HOM05D006013 ORTHO05D007383 1.3e-10 69.3 62 64.5
ClCG04G005340 Citrullus lanatus HOM05D006013 ORTHO05D007383 1.3e-10 69.3 60 63.3
HanXRQChr03g0090471 Helianthus annuus HOM05D006013 ORTHO05D007383 1.3e-10 69.3 60 61.7
PGR142G2967 Punica granatum HOM05D006013 ORTHO05D007383 1.3e-10 69.3 61 63.9
RcHm_v2.0_Chr3g0497041 Rosa chinensis HOM05D006013 ORTHO05D007383 2.2e-10 68.6 65 58.5
BcaC05g30245 Brassica carinata HOM05D006013 ORTHO05D007383 2.8e-10 68.2 60 60.0
FvH4_1g28200 Fragaria vesca HOM05D006013 ORTHO05D007383 2.8e-10 68.2 60 58.3
FAN19G2205 Fragaria x ananassa HOM05D006013 ORTHO05D007383 2.8e-10 68.2 60 58.3
FAN26G3022 Fragaria x ananassa HOM05D006013 ORTHO05D007383 2.8e-10 68.2 60 58.3
FAN28G1937 Fragaria x ananassa HOM05D006013 ORTHO05D007383 2.8e-10 68.2 60 58.3
HPP92_018470 Vanilla planifolia HOM05D006013 ORTHO05D007383 2.8e-10 68.2 60 53.3
MBI01_g13088_MAGBIO Magnolia biondii HOM05D006013 ORTHO05D007383 3.7e-10 67.8 58 56.9
Solyc03g063240.3 Solanum lycopersicum HOM05D006013 ORTHO05D007383 3.7e-10 67.8 52 63.5
PGSC0003DMG400033345 Solanum tuberosum HOM05D006013 ORTHO05D007383 3.7e-10 67.8 52 63.5
HPP92_018481 Vanilla planifolia HOM05D006013 ORTHO05D007383 3.7e-10 67.8 60 53.3
VMungo1383G3468 Vigna mungo HOM05D006013 ORTHO05D007383 3.7e-10 67.8 61 63.9
EL10Ac3g06825 Beta vulgaris HOM05D006013 ORTHO05D007383 4.8e-10 67.4 60 56.7
unitig_46.g18447 Utricularia gibba HOM05D006013 ORTHO05D007383 4.8e-10 67.4 60 55.0
Sp3g02860 Schrenkiella parvula HOM05D006013 ORTHO05D007383 8.3e-10 66.6 59 59.3
MELO3C008805.2 Cucumis melo HOM05D006013 ORTHO05D007383 1.1e-09 66.2 59 61.0
Manes.08G144700 Manihot esculenta HOM05D006013 ORTHO05D007383 1.4e-09 65.9 59 57.6
CANSAT78G0686 Cannabis sativa HOM05D006013 ORTHO05D007383 1.8e-09 65.5 58 62.1
AUR62032048 Chenopodium quinoa HOM05D006013 ORTHO05D007383 1.8e-09 65.5 54 59.3
Lalb_Chr14g0364531 Lupinus albus HOM05D006013 ORTHO05D007383 2.4e-09 65.1 61 60.7
SGA_v2.0_scaffold94G28403 Striga asiatica HOM05D006013 ORTHO05D007383 2.4e-09 65.1 61 55.7
A05p43500 Brassica napus HOM05D006013 ORTHO05D007383 3.1e-09 64.7 60 61.7
SalBow6G2467 Salvia bowleyana HOM05D006013 ORTHO05D007383 3.1e-09 64.7 52 59.6
AUR62032699 Chenopodium quinoa HOM05D006013 ORTHO05D007383 5.4e-09 63.9 58 56.9
CsaV3_4G013250 Cucumis sativus L. HOM05D006013 ORTHO05D007383 7.0e-09 63.5 57 59.6
Aqoxy2G00451 Aquilegia oxysepala HOM05D006013 ORTHO05D007383 1.2e-08 62.8 60 55.0
MD12G1004000 Malus domestica HOM05D006013 ORTHO05D007383 1.6e-08 62.4 63 55.6
Migut.J01884 Erythranthe guttata HOM05D006013 ORTHO05D007383 2.7e-08 61.6 59 57.6
ATR0737G078 Amborella trichopoda HOM05D006013 ORTHO05D007383 3.5e-08 61.2 51 56.9
BcaC05g29895 Brassica carinata HOM05D006013 ORTHO05D007383 7.7e-08 60.1 54 57.4
BcaC05g30290 Brassica carinata HOM05D006013 ORTHO05D007383 1.7e-07 58.9 43 67.4
BolC5t34969H Brassica oleracea HOM05D006013 ORTHO05D007383 2.9e-07 58.2 59 57.6
CDE05G2375 Ceratophyllum demersum HOM05D006013 ORTHO05D007383 6.6e-07 57.0 60 53.3


User provided reference genes

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