Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 2.9e-88 328.6 167 100.0
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 5.1e-37 158.3 113 78.8
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.1e-34 150.6 113 72.6
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 1.5e-33 146.7 113 69.0
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 2.6e-33 146.0 113 73.5
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 1.0e-32 144.1 113 69.9
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 2.9e-32 142.5 113 66.4
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 2.9e-32 142.5 117 71.8
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.9e-32 142.5 113 68.1
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.5e-31 139.4 113 69.0
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 4.2e-31 138.7 113 65.5
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 4.2e-31 138.7 113 68.1
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 5.5e-31 138.3 116 68.1
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 7.2e-31 137.9 117 69.2
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 9.4e-31 137.5 119 67.2
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 1.6e-30 136.7 116 66.4
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.1e-30 136.3 116 67.2
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.7e-30 136.0 119 67.2
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 2.7e-30 136.0 119 63.0
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.0e-29 134.0 113 64.6
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 1.4e-29 133.7 113 65.5
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 1.4e-29 133.7 113 66.4
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 2.3e-29 132.9 113 64.6
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 3.0e-29 132.5 118 66.9
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 3.9e-29 132.1 113 63.7
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 5.1e-29 131.7 113 63.7
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 6.7e-29 131.3 114 62.3
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 8.8e-29 131.0 116 62.9
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 8.8e-29 131.0 113 65.5
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 8.8e-29 131.0 113 64.6
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 1.5e-28 130.2 150 54.0
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 1.5e-28 130.2 111 69.4
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 2.0e-28 129.8 113 63.7
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.6e-28 129.4 113 62.8
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 2.6e-28 129.4 118 65.3
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 3.3e-28 129.0 113 63.7
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 4.4e-28 128.6 116 63.8
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 5.7e-28 128.3 114 64.0
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 7.4e-28 127.9 113 66.4
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 9.7e-28 127.5 113 65.5
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 9.7e-28 127.5 113 65.5
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 1.3e-27 127.1 114 64.0
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 2.2e-27 126.3 113 62.8
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 2.2e-27 126.3 113 62.8
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.8e-27 125.9 113 63.7
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 3.7e-27 125.6 113 64.6
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 4.8e-27 125.2 166 47.0
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 6.3e-27 124.8 166 47.0
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 6.3e-27 124.8 113 61.9
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 8.2e-27 124.4 113 61.9
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.1e-26 124.0 113 61.9
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 1.4e-26 123.6 113 64.6
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 1.4e-26 123.6 113 60.2
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 4.1e-26 122.1 113 62.8
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 4.1e-26 122.1 107 63.6
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 4.1e-26 122.1 114 63.2
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 5.3e-26 121.7 118 60.2
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 9.1e-26 120.9 113 62.8
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 9.1e-26 120.9 114 62.3
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 9.1e-26 120.9 117 62.4
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 1.2e-25 120.6 117 62.4
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 1.5e-25 120.2 114 63.2
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 1.5e-25 120.2 107 62.6
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 2.0e-25 119.8 113 60.2
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 2.6e-25 119.4 113 60.2
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.6e-25 119.4 113 61.9
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 3.4e-25 119.0 117 65.0
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 3.4e-25 119.0 119 60.5
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.4e-25 119.0 130 56.9
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 4.5e-25 118.6 114 62.3
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 1.3e-24 117.1 113 61.1
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.7e-24 116.7 116 62.1
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.2e-24 116.3 116 62.1
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 2.2e-24 116.3 114 60.5
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 2.2e-24 116.3 116 58.6
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 2.9e-24 115.9 113 62.8
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 3.8e-24 115.5 113 59.3
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 3.8e-24 115.5 113 59.3
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 6.5e-24 114.8 123 60.2
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 1.1e-23 114.0 116 58.6
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 1.1e-23 114.0 116 58.6
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 1.4e-23 113.6 113 60.2
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 2.5e-23 112.8 116 58.6
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 2.5e-23 112.8 116 58.6
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 3.2e-23 112.5 116 58.6
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 3.2e-23 112.5 114 56.1
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 4.2e-23 112.1 113 59.3
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 5.5e-23 111.7 116 58.6
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 5.5e-23 111.7 114 56.1
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 7.2e-23 111.3 113 60.2
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 1.6e-22 110.2 112 60.7
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 4.7e-22 108.6 116 56.9
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 6.1e-22 108.2 116 56.9
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 8.0e-22 107.8 113 56.6
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 1.0e-21 107.5 116 57.8
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 1.4e-21 107.1 116 56.9
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 2.3e-21 106.3 113 54.9
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 2.3e-21 106.3 117 58.1
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 3.0e-21 105.9 116 56.0
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 6.7e-21 104.8 117 57.3
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.0e-20 103.2 114 59.6
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 5.7e-20 101.7 115 55.7
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 7.4e-20 101.3 116 54.3
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 9.7e-20 100.9 86 65.1
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 1.7e-19 100.1 116 53.4
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 1.7e-19 100.1 116 52.6
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 2.2e-19 99.8 116 51.7
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 3.7e-19 99.0 116 54.3
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 3.7e-19 99.0 58 86.2
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.1e-18 97.4 153 43.8
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.8e-18 96.7 115 50.4
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 1.6e-17 93.6 115 50.4
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 1.0e-16 90.9 102 56.9
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.0e-16 90.9 82 58.5
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 1.1e-15 87.4 113 49.6
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 2.5e-15 86.3 113 51.3
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 1.6e-14 83.6 120 50.8
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 2.1e-14 83.2 92 56.5
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 2.7e-14 82.8 113 48.7
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 1.0e-13 80.9 59 72.9
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 5.2e-13 78.6 113 46.0
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 8.8e-13 77.8 57 73.7
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 3.3e-12 75.9 116 47.4
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 3.3e-12 75.9 116 47.4
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 1.4e-10 70.5 81 51.9
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 3.1e-10 69.3 115 38.3
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 3.1e-10 69.3 59 59.3
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 5.3e-10 68.6 116 46.6
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 5.5e-07 58.5 30 86.7


User provided reference genes

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