Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 3.4e-52 208.0 102 100.0
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 4.5e-52 207.6 101 100.0
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 1.3e-46 189.5 101 91.1
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 4.1e-45 184.5 101 87.1
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 3.5e-44 181.4 101 84.2
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 3.5e-44 181.4 101 86.1
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 4.5e-44 181.0 101 85.1
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 5.9e-44 180.6 101 86.1
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 5.9e-44 180.6 101 86.1
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 7.7e-44 180.3 101 83.2
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 1.3e-43 179.5 101 86.1
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 1.3e-43 179.5 101 86.1
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 1.3e-43 179.5 101 84.2
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 3.8e-43 177.9 101 86.1
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 3.8e-43 177.9 101 84.2
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 5.0e-43 177.6 101 82.2
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 5.0e-43 177.6 101 85.1
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 5.0e-43 177.6 101 85.1
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 1.1e-42 176.4 101 84.2
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 1.1e-42 176.4 101 85.1
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 1.5e-42 176.0 101 85.1
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 1.5e-42 176.0 101 83.2
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 1.9e-42 175.6 101 85.1
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 2.5e-42 175.3 101 82.2
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 2.5e-42 175.3 101 81.2
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 4.2e-42 174.5 101 83.2
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 5.5e-42 174.1 101 84.2
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 5.5e-42 174.1 101 83.2
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 7.2e-42 173.7 101 81.2
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 7.2e-42 173.7 101 82.2
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 7.2e-42 173.7 101 81.2
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 7.2e-42 173.7 101 81.2
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 7.2e-42 173.7 101 80.2
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 7.2e-42 173.7 101 82.2
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 9.4e-42 173.3 101 82.2
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 9.4e-42 173.3 101 80.2
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 9.4e-42 173.3 101 80.2
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 9.4e-42 173.3 101 83.2
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 1.2e-41 172.9 101 83.2
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 1.2e-41 172.9 101 82.2
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 2.1e-41 172.2 100 81.0
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 2.1e-41 172.2 100 81.0
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 2.1e-41 172.2 101 84.2
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 2.7e-41 171.8 101 79.2
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 2.7e-41 171.8 101 80.2
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 2.7e-41 171.8 101 83.2
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 2.7e-41 171.8 101 78.2
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 2.7e-41 171.8 101 82.2
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 2.7e-41 171.8 101 82.2
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 3.6e-41 171.4 101 79.2
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 3.6e-41 171.4 101 80.2
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 3.6e-41 171.4 101 81.2
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 4.7e-41 171.0 101 78.2
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 4.7e-41 171.0 101 81.2
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 4.7e-41 171.0 101 81.2
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 4.7e-41 171.0 101 83.2
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 4.7e-41 171.0 101 79.2
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 4.7e-41 171.0 101 80.2
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 6.1e-41 170.6 101 81.2
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 1.0e-40 169.9 101 78.2
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 1.0e-40 169.9 101 78.2
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 1.0e-40 169.9 101 77.2
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 1.0e-40 169.9 101 79.2
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 1.0e-40 169.9 101 78.2
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 1.4e-40 169.5 101 77.2
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 1.4e-40 169.5 101 81.2
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 2.3e-40 168.7 101 79.2
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 3.0e-40 168.3 101 78.2
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 3.0e-40 168.3 101 78.2
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 5.2e-40 167.5 101 78.2
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 5.2e-40 167.5 101 78.2
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 5.2e-40 167.5 101 79.2
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 1.5e-39 166.0 101 76.2
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 1.5e-39 166.0 101 78.2
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 2.0e-39 165.6 102 77.5
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 2.0e-39 165.6 102 77.5
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 2.0e-39 165.6 101 79.2
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 3.3e-39 164.9 102 76.5
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 3.3e-39 164.9 102 76.5
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 3.3e-39 164.9 102 76.5
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 3.3e-39 164.9 101 77.2
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 4.4e-39 164.5 101 77.2
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 5.7e-39 164.1 101 79.2
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 1.7e-38 162.5 102 80.4
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 3.7e-38 161.4 101 77.2
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 3.7e-38 161.4 101 76.2
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.6e-36 156.0 100 75.0
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 1.3e-35 152.9 101 68.3
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 1.7e-35 152.5 101 68.3
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 1.0e-32 143.3 101 64.4
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 4.4e-31 137.9 100 59.0
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 1.7e-30 136.0 101 60.4
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 1.4e-29 132.9 81 79.0
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 2.4e-29 132.1 76 80.3
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 8.9e-24 113.6 106 50.9
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 4.1e-21 104.8 57 84.2
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 4.1e-21 104.8 57 84.2
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 7.0e-21 104.0 108 43.5
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 7.0e-21 104.0 53 90.6
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 5.9e-20 100.9 54 83.3
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 1.2e-17 93.2 60 78.3
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 1.7e-11 72.8 119 33.6


User provided reference genes

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