Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0150F.1_g066845 Hydrangea macrophylla HOM05D003581 ORTHO05D004332 1.3e-51 206.1 102 100.0
Hma1.2p1_3411F.1_g335900 Hydrangea macrophylla HOM05D003581 ORTHO05D004332 1.3e-51 206.1 102 100.0
Hma1.2p1_0150F.1_g066840 Hydrangea macrophylla HOM05D003581 ORTHO05D004332 1.5e-47 192.6 117 85.5
Lsat_1_v5_gn_1_74961 Lactuca sativa HOM05D003581 ORTHO05D004332 1.0e-24 116.7 113 58.4
Hma1.2p1_0108F.1_g051730 Hydrangea macrophylla HOM05D003581 ORTHO05D004332 3.4e-23 111.7 120 58.3
PGR042G0246 Punica granatum HOM05D003581 ORTHO05D004332 3.4e-23 111.7 110 57.3
Dinv33206 Davidia involucrata HOM05D003581 ORTHO05D004332 5.7e-23 110.9 113 57.5
HanXRQChr11g0343141 Helianthus annuus HOM05D003581 ORTHO05D004332 6.3e-22 107.5 113 50.4
Duzib151G0128 Durio zibethinus HOM05D003581 ORTHO05D004332 1.4e-21 106.3 115 53.0
MSTRG.4302 Avicennia marina HOM05D003581 ORTHO05D004332 1.8e-21 105.9 115 52.2
Haze_01360 Corylus avellana HOM05D003581 ORTHO05D004332 1.8e-21 105.9 110 55.5
Lsat_1_v5_gn_6_65760 Lactuca sativa HOM05D003581 ORTHO05D004332 1.8e-21 105.9 111 54.1
QL10p055884 Quercus lobata HOM05D003581 ORTHO05D004332 2.4e-21 105.5 110 53.6
CSS0022611 Camellia sinensis var. sinensis HOM05D003581 ORTHO05D004332 3.1e-21 105.1 116 54.3
Duzib212G0814 Durio zibethinus HOM05D003581 ORTHO05D004332 3.1e-21 105.1 114 53.5
MD00G1149500 Malus domestica HOM05D003581 ORTHO05D004332 3.1e-21 105.1 115 53.9
Lj6A223G7 Lonicera japonica HOM05D003581 ORTHO05D004332 4.1e-21 104.8 100 54.0
GSVIVG01038144001 Vitis vinifera HOM05D003581 ORTHO05D004332 4.1e-21 104.8 111 53.2
Lj6A212G5 Lonicera japonica HOM05D003581 ORTHO05D004332 5.4e-21 104.4 100 54.0
RcHm_v2.0_Chr5g0060731 Rosa chinensis HOM05D003581 ORTHO05D004332 7.0e-21 104.0 114 55.3
TWI63G1729 Tripterygium wilfordii HOM05D003581 ORTHO05D004332 7.0e-21 104.0 117 50.4
Gohir.A02G009800 Gossypium hirsutum HOM05D003581 ORTHO05D004332 9.2e-21 103.6 113 52.2
Atru.chr4.1420 Acer truncatum HOM05D003581 ORTHO05D004332 1.2e-20 103.2 104 52.9
Cpa.g.sc9.368 Carica papaya HOM05D003581 ORTHO05D004332 1.2e-20 103.2 109 50.5
Cc03_g14130 Coffea canephora HOM05D003581 ORTHO05D004332 1.2e-20 103.2 106 50.9
Migut.G01176 Erythranthe guttata HOM05D003581 ORTHO05D004332 1.2e-20 103.2 121 48.8
Peaxi162Scf00180g00011 Petunia axillaris HOM05D003581 ORTHO05D004332 1.2e-20 103.2 123 46.3
Actinidia11443 Actinidia chinensis HOM05D003581 ORTHO05D004332 2.0e-20 102.4 110 55.5
Sopen08g005080 Solanum pennellii HOM05D003581 ORTHO05D004332 2.0e-20 102.4 112 52.7
Ciclev10019423m.g Citrus clementina HOM05D003581 ORTHO05D004332 2.7e-20 102.1 113 51.3
Ciclev10019435m.g Citrus clementina HOM05D003581 ORTHO05D004332 2.7e-20 102.1 113 51.3
Duzib268G0130 Durio zibethinus HOM05D003581 ORTHO05D004332 2.7e-20 102.1 110 50.9
Gohir.D02G010000 Gossypium hirsutum HOM05D003581 ORTHO05D004332 2.7e-20 102.1 113 50.4
Gorai.005G012300 Gossypium raimondii HOM05D003581 ORTHO05D004332 2.7e-20 102.1 113 50.4
Oeu015720.1 Olea europaea HOM05D003581 ORTHO05D004332 3.5e-20 101.7 115 50.4
Eucgr.L00003 Eucalyptus grandis HOM05D003581 ORTHO05D004332 5.9e-20 100.9 107 55.1
Lju470A15G16 Lonicera japonica HOM05D003581 ORTHO05D004332 7.8e-20 100.5 130 46.2
Nitab4.5_0002544g0010 Nicotiana tabacum HOM05D003581 ORTHO05D004332 7.8e-20 100.5 104 50.0
MELO3C017762.2 Cucumis melo HOM05D003581 ORTHO05D004332 1.0e-19 100.1 118 53.4
SGA_v2.0_scaffold283G46956 Striga asiatica HOM05D003581 ORTHO05D004332 1.0e-19 100.1 115 48.7
Actinidia02585 Actinidia chinensis HOM05D003581 ORTHO05D004332 1.3e-19 99.8 102 55.9
PSO837G0047 Papaver somniferum HOM05D003581 ORTHO05D004332 1.3e-19 99.8 112 50.9
ClCG07G015200 Citrullus lanatus HOM05D003581 ORTHO05D004332 1.7e-19 99.4 113 54.9
CsaV3_4G002790 Cucumis sativus L. HOM05D003581 ORTHO05D004332 1.7e-19 99.4 118 53.4
Nitab4.5_0000013g0560 Nicotiana tabacum HOM05D003581 ORTHO05D004332 1.7e-19 99.4 112 50.0
Ciclev10019432m.g Citrus clementina HOM05D003581 ORTHO05D004332 2.3e-19 99.0 113 50.4
ECA248G0552 Erigeron canadensis HOM05D003581 ORTHO05D004332 2.3e-19 99.0 106 56.6
PSO017G3340 Papaver somniferum HOM05D003581 ORTHO05D004332 2.3e-19 99.0 112 51.8
Nitab4.5_0001411g0030 Nicotiana tabacum HOM05D003581 ORTHO05D004332 2.9e-19 98.6 112 50.9
TWI15G0618 Tripterygium wilfordii HOM05D003581 ORTHO05D004332 2.9e-19 98.6 116 50.9
MSTRG.22033 Avicennia marina HOM05D003581 ORTHO05D004332 3.8e-19 98.2 113 50.4
Oeu016612.2 Olea europaea HOM05D003581 ORTHO05D004332 3.8e-19 98.2 100 54.0
FvH4_3g33330 Fragaria vesca HOM05D003581 ORTHO05D004332 8.6e-19 97.1 113 51.3
FAN11G3774 Fragaria x ananassa HOM05D003581 ORTHO05D004332 8.6e-19 97.1 113 51.3
Lalb_Chr05g0218901 Lupinus albus HOM05D003581 ORTHO05D004332 8.6e-19 97.1 106 52.8
Peaxi162Scf00075g01320 Petunia axillaris HOM05D003581 ORTHO05D004332 1.1e-18 96.7 112 49.1
Sed0001548 Sechium edule HOM05D003581 ORTHO05D004332 1.1e-18 96.7 111 53.2
Actinidia28979 Actinidia chinensis HOM05D003581 ORTHO05D004332 1.5e-18 96.3 108 52.8
FAN16G1590 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.5e-18 96.3 113 50.4
FAN25G3295 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.5e-18 96.3 113 50.4
Nn7g37551 Nelumbo nucifera HOM05D003581 ORTHO05D004332 1.5e-18 96.3 107 51.4
Nitab4.5_0001586g0020 Nicotiana tabacum HOM05D003581 ORTHO05D004332 1.5e-18 96.3 119 43.7
Sc19g0002230 Simmondsia chinensis HOM05D003581 ORTHO05D004332 1.5e-18 96.3 118 50.8
TPR.G23544 Trifolium pratense HOM05D003581 ORTHO05D004332 1.9e-18 95.9 106 53.8
FAN21G3444 Fragaria x ananassa HOM05D003581 ORTHO05D004332 2.5e-18 95.5 113 50.4
HanXRQChr02g0059151 Helianthus annuus HOM05D003581 ORTHO05D004332 3.3e-18 95.1 103 54.4
Potri.013G127000 Populus trichocarpa HOM05D003581 ORTHO05D004332 4.3e-18 94.7 114 49.1
Rhsim02G0084300 Rhododendron simsii HOM05D003581 ORTHO05D004332 4.3e-18 94.7 113 47.8
Sp5g03520 Schrenkiella parvula HOM05D003581 ORTHO05D004332 5.6e-18 94.4 117 47.9
Solyc06g053420.4 Solanum lycopersicum HOM05D003581 ORTHO05D004332 7.3e-18 94.0 120 45.8
Aa31LG10G13950 Aethionema arabicum HOM05D003581 ORTHO05D004332 9.5e-18 93.6 117 47.0
SalBow6G2049 Salvia bowleyana HOM05D003581 ORTHO05D004332 9.5e-18 93.6 115 52.2
AT3G59660 Arabidopsis thaliana HOM05D003581 ORTHO05D004332 1.2e-17 93.2 118 45.8
Medtr4g087320 Medicago truncatula HOM05D003581 ORTHO05D004332 1.2e-17 93.2 106 52.8
Gohir.A10G143900 Gossypium hirsutum HOM05D003581 ORTHO05D004332 1.6e-17 92.8 113 48.7
COL.COLO4_06497 Corchorus olitorius HOM05D003581 ORTHO05D004332 2.1e-17 92.4 111 49.5
Gohir.D10G123100 Gossypium hirsutum HOM05D003581 ORTHO05D004332 2.1e-17 92.4 113 48.7
Gorai.011G135600 Gossypium raimondii HOM05D003581 ORTHO05D004332 2.1e-17 92.4 113 48.7
BcaC07g40497 Brassica carinata HOM05D003581 ORTHO05D004332 2.8e-17 92.0 113 48.7
C08p34660 Brassica napus HOM05D003581 ORTHO05D004332 2.8e-17 92.0 113 48.7
BolC8t51068H Brassica oleracea HOM05D003581 ORTHO05D004332 2.8e-17 92.0 113 48.7
CiPaw.01G170400 Carya illinoinensis HOM05D003581 ORTHO05D004332 2.8e-17 92.0 107 52.3
Glyma.02G137700 Glycine max HOM05D003581 ORTHO05D004332 2.8e-17 92.0 99 55.6
Psat7g120160 Pisum sativum HOM05D003581 ORTHO05D004332 2.8e-17 92.0 100 54.0
CARHR170030 Cardamine hirsuta HOM05D003581 ORTHO05D004332 3.6e-17 91.7 117 49.6
Sed0016715 Sechium edule HOM05D003581 ORTHO05D004332 3.6e-17 91.7 108 50.0
AL5G41730 Arabidopsis lyrata HOM05D003581 ORTHO05D004332 4.7e-17 91.3 120 45.8
Sabra13G0106000 Salix brachista HOM05D003581 ORTHO05D004332 6.1e-17 90.9 152 40.1
Sopen06g018480 Solanum pennellii HOM05D003581 ORTHO05D004332 8.0e-17 90.5 116 46.6
TAR362G0335 Trochodendron aralioides HOM05D003581 ORTHO05D004332 8.0e-17 90.5 115 47.8
arahy.Tifrunner.gnm1.ann1.CYNM9M Arachis hypogaea HOM05D003581 ORTHO05D004332 1.4e-16 89.7 110 52.7
BraA09t40631Z Brassica rapa HOM05D003581 ORTHO05D004332 1.4e-16 89.7 113 47.8
Thhalv10005851m.g Eutrema salsugineum HOM05D003581 ORTHO05D004332 1.4e-16 89.7 120 46.7
Ah.13g073460 Amaranthus hybridus HOM05D003581 ORTHO05D004332 1.8e-16 89.4 96 51.0
Migut.N03065 Erythranthe guttata HOM05D003581 ORTHO05D004332 1.8e-16 89.4 106 49.1
Carub.0005s2638 Capsella rubella HOM05D003581 ORTHO05D004332 4.0e-16 88.2 117 47.9
AUR62023792 Chenopodium quinoa HOM05D003581 ORTHO05D004332 4.0e-16 88.2 108 50.0
Phvul.003G296800 Phaseolus vulgaris HOM05D003581 ORTHO05D004332 4.0e-16 88.2 101 50.5
EL10Ac3g06090 Beta vulgaris HOM05D003581 ORTHO05D004332 5.2e-16 87.8 106 50.9
A09p51980 Brassica napus HOM05D003581 ORTHO05D004332 5.2e-16 87.8 114 45.6
DCAR_027523 Daucus carota HOM05D003581 ORTHO05D004332 5.2e-16 87.8 108 48.1
THA.LOC104817844 Tarenaya hassleriana HOM05D003581 ORTHO05D004332 5.2e-16 87.8 119 47.1
BcaC08g44999 Brassica carinata HOM05D003581 ORTHO05D004332 8.9e-16 87.0 112 45.5
C06p26310 Brassica napus HOM05D003581 ORTHO05D004332 8.9e-16 87.0 112 45.5
BolC6t37794H Brassica oleracea HOM05D003581 ORTHO05D004332 8.9e-16 87.0 112 45.5
Aqoxy2G04153 Aquilegia oxysepala HOM05D003581 ORTHO05D004332 1.5e-15 86.3 112 47.3
arahy.Tifrunner.gnm1.ann1.S0PZLW Arachis hypogaea HOM05D003581 ORTHO05D004332 1.5e-15 86.3 107 52.3
Glyma.07G207700 Glycine max HOM05D003581 ORTHO05D004332 1.5e-15 86.3 100 51.0
A07p24730 Brassica napus HOM05D003581 ORTHO05D004332 2.0e-15 85.9 112 45.5
Lj4g0012121 Lotus japonicus HOM05D003581 ORTHO05D004332 2.0e-15 85.9 98 52.0
BcaB02g07454 Brassica carinata HOM05D003581 ORTHO05D004332 3.4e-15 85.1 112 45.5
Ca_18637_v3 Cicer arietinum L. HOM05D003581 ORTHO05D004332 7.5e-15 84.0 137 40.9
VMungo0251G3355 Vigna mungo HOM05D003581 ORTHO05D004332 7.5e-15 84.0 103 48.5
CAN.G759.9 Capsicum annuum HOM05D003581 ORTHO05D004332 9.8e-15 83.6 110 44.5
AUR62002403 Chenopodium quinoa HOM05D003581 ORTHO05D004332 1.7e-14 82.8 107 46.7
Rhsim09G0009900 Rhododendron simsii HOM05D003581 ORTHO05D004332 3.7e-14 81.6 103 48.5
ATR0743G267 Amborella trichopoda HOM05D003581 ORTHO05D004332 6.4e-14 80.9 114 44.7
MBI11_g16039_MAGBIO Magnolia biondii HOM05D003581 ORTHO05D004332 1.1e-13 80.1 141 40.4
Os09g0516900 Oryza sativa ssp. japonica HOM05D003581 ORTHO05D004332 1.6e-12 76.3 109 45.9
Zm00001eb102830 Zea mays HOM05D003581 ORTHO05D004332 1.6e-12 76.3 102 46.1
SalBow3G1683 Salvia bowleyana HOM05D003581 ORTHO05D004332 2.7e-12 75.5 107 44.9
Zm00001eb318620 Zea mays HOM05D003581 ORTHO05D004332 2.7e-12 75.5 102 44.1
CDE02G2835 Ceratophyllum demersum HOM05D003581 ORTHO05D004332 3.5e-12 75.1 113 40.7
vmacro00695 Vaccinium macrocarpon HOM05D003581 ORTHO05D004332 3.5e-12 75.1 115 45.2
HPP92_012802 Vanilla planifolia HOM05D003581 ORTHO05D004332 1.3e-11 73.2 127 38.6
Dinv07056 Davidia involucrata HOM05D003581 ORTHO05D004332 2.5e-10 68.9 33 93.9
CBR_g46857 Chara braunii HOM05D003581 ORTHO05D004332 4.3e-10 68.2 117 36.8
Peaxi162Scf00568g00013 Petunia axillaris HOM05D003581 ORTHO05D004332 4.3e-10 68.2 112 41.1
Manes.11G129000 Manihot esculenta HOM05D003581 ORTHO05D004332 7.3e-10 67.4 33 90.9
CiPaw.02G100300 Carya illinoinensis HOM05D003581 ORTHO05D004332 1.2e-09 66.6 33 90.9
Thecc.04G165500 Theobroma cacao HOM05D003581 ORTHO05D004332 1.6e-09 66.2 33 87.9
DCAR_005471 Daucus carota HOM05D003581 ORTHO05D004332 2.1e-09 65.9 33 87.9
Oeu050335.1 Olea europaea HOM05D003581 ORTHO05D004332 2.1e-09 65.9 33 87.9
SEGI_09954 Sequoiadendron giganteum HOM05D003581 ORTHO05D004332 2.1e-09 65.9 33 84.8
Cfa015269 Carpinus fangiana HOM05D003581 ORTHO05D004332 3.6e-09 65.1 33 87.9
MSTRG.9734 Avicennia marina HOM05D003581 ORTHO05D004332 6.2e-09 64.3 34 82.4
Solyc08g014150.4 Solanum lycopersicum HOM05D003581 ORTHO05D004332 6.2e-09 64.3 33 84.8
SHI33494 Sapria himalayana HOM05D003581 ORTHO05D000001 1.1e-08 63.5 36 75.0
SEGI_00445 Sequoiadendron giganteum HOM05D003581 ORTHO05D004332 1.4e-08 63.2 119 37.8
Lalb_Chr16g0384431 Lupinus albus HOM05D003581 ORTHO05D004332 2.3e-08 62.4 33 84.8
CAN.G136.12 Capsicum annuum HOM05D003581 ORTHO05D004332 3.1e-08 62.0 33 81.8
SMO358G0294 Selaginella moellendorffii HOM05D003581 ORTHO05D004332 4.0e-08 61.6 117 38.5
arahy.Tifrunner.gnm1.ann1.KL9X3Y Arachis hypogaea HOM05D003581 ORTHO05D004332 8.9e-08 60.5 53 52.8
Mapoly0029s0087 Marchantia polymorpha HOM05D003581 ORTHO05D004332 5.8e-07 57.8 126 35.7
arahy.Tifrunner.gnm1.ann1.QCV2L4 Arachis hypogaea HOM05D003581 ORTHO05D004332 7.5e-07 57.4 32 75.0
Pp3c15_5890 Physcomitrium patens HOM05D003581 ORTHO05D004332 7.5e-07 57.4 118 34.7
Zm00001eb246670 Zea mays HOM05D003581 ORTHO05D004332 1.7e-06 56.2 44 61.4
AUR62041506 Chenopodium quinoa HOM05D003581 ORTHO05D014148 2.2e-06 55.8 35 71.4
Oeu015722.1 Olea europaea HOM05D003581 ORTHO05D004332 2.2e-06 55.8 33 75.8


User provided reference genes

Program Settings