Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0150F.1_g066800 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 1.3e-30 135.6 62 100.0
CSS0039414 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 2.9e-30 134.4 62 98.4
CSS0047181 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 2.9e-30 134.4 62 98.4
Hma1.2p1_0307F.1_g119895 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 2.9e-30 134.4 62 98.4
CiPaw.11G096400 Carya illinoinensis HOM05D004197 ORTHO05D004975 1.9e-29 131.7 62 95.2
Rhsim03G0176800 Rhododendron simsii HOM05D004197 ORTHO05D004975 4.3e-29 130.6 62 95.2
vmacro16589 Vaccinium macrocarpon HOM05D004197 ORTHO05D004975 4.3e-29 130.6 62 95.2
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 5.6e-29 130.2 62 95.2
Lalb_Chr04g0253841 Lupinus albus HOM05D004197 ORTHO05D004975 5.6e-29 130.2 62 96.8
Thecc.04G166300 Theobroma cacao HOM05D004197 ORTHO05D004975 5.6e-29 130.2 62 95.2
COL.COLO4_08144 Corchorus olitorius HOM05D004197 ORTHO05D004975 7.3e-29 129.8 62 93.5
TAR362G0244 Trochodendron aralioides HOM05D000090 ORTHO05D001584 7.3e-29 129.8 62 95.2
GSVIVG01038138001 Vitis vinifera HOM05D004197 ORTHO05D004975 7.3e-29 129.8 62 96.8
Atru.chr12.1293 Acer truncatum HOM05D004197 ORTHO05D004975 9.5e-29 129.4 62 93.5
Cpa.g.sc10.180 Carica papaya HOM05D004197 ORTHO05D004975 1.6e-28 128.6 62 93.5
ClCG07G015230 Citrullus lanatus HOM05D004197 ORTHO05D004975 1.6e-28 128.6 62 91.9
Gohir.A05G367700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.6e-28 128.6 62 93.5
Gohir.A10G143100 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.6e-28 128.6 62 93.5
Gohir.D10G123800 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.6e-28 128.6 62 93.5
Gorai.011G136700 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.6e-28 128.6 62 93.5
Gorai.012G053000 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.6e-28 128.6 62 93.5
Ca_10539_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 2.1e-28 128.3 62 93.5
Dinv33200 Davidia involucrata HOM05D004197 ORTHO05D004975 2.1e-28 128.3 62 93.5
Nn1g09691 Nelumbo nucifera HOM05D004197 ORTHO05D004975 2.1e-28 128.3 62 93.5
Phvul.003G238300 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 2.8e-28 127.9 62 91.9
TAR493G0004 Trochodendron aralioides HOM05D004197 ORTHO05D004975 2.8e-28 127.9 62 95.2
TAR629G0957 Trochodendron aralioides HOM05D004197 ORTHO05D004975 2.8e-28 127.9 62 95.2
Atru.chr4.2919 Acer truncatum HOM05D004197 ORTHO05D004975 3.6e-28 127.5 62 91.9
CsaV3_4G002820 Cucumis sativus L. HOM05D004197 ORTHO05D004975 3.6e-28 127.5 62 90.3
Duzib151G0052 Durio zibethinus HOM05D004197 ORTHO05D004975 4.7e-28 127.1 62 91.9
Glyma.05G102000 Glycine max HOM05D004197 ORTHO05D004975 4.7e-28 127.1 62 91.9
TWI32G1250 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 4.7e-28 127.1 62 90.3
Ca_23424_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 6.1e-28 126.7 62 93.5
Gohir.D04G047600 Gossypium hirsutum HOM05D004197 ORTHO05D004975 8.0e-28 126.3 62 91.9
Lalb_Chr10g0101191 Lupinus albus HOM05D004197 ORTHO05D004975 8.0e-28 126.3 62 91.9
arahy.Tifrunner.gnm1.ann1.4JR04K Arachis hypogaea HOM05D004197 ORTHO05D004975 1.0e-27 125.9 62 91.9
arahy.Tifrunner.gnm1.ann1.5DCW4K Arachis hypogaea HOM05D004197 ORTHO05D004975 1.0e-27 125.9 62 91.9
arahy.Tifrunner.gnm1.ann1.E9H45Q Arachis hypogaea HOM05D004197 ORTHO05D004975 1.0e-27 125.9 62 91.9
arahy.Tifrunner.gnm1.ann1.GGUP18 Arachis hypogaea HOM05D004197 ORTHO05D004975 1.0e-27 125.9 62 91.9
EL10Ac6g15364 Beta vulgaris HOM05D004197 ORTHO05D004975 1.4e-27 125.6 62 91.9
Phvul.010G124900 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 1.4e-27 125.6 62 91.9
PGR142G4086 Punica granatum HOM05D004197 ORTHO05D004975 1.4e-27 125.6 62 91.9
VMungo0251G3068 Vigna mungo HOM05D004197 ORTHO05D004975 1.4e-27 125.6 62 90.3
AUR62023799 Chenopodium quinoa HOM05D004197 ORTHO05D004975 1.8e-27 125.2 62 88.7
Sed0002539 Sechium edule HOM05D004197 ORTHO05D004975 1.8e-27 125.2 62 90.3
CiPaw.12G066300 Carya illinoinensis HOM05D004197 ORTHO05D004975 2.3e-27 124.8 62 88.7
Duzib212G0574 Durio zibethinus HOM05D004197 ORTHO05D004975 2.3e-27 124.8 62 91.9
Cfa015042 Carpinus fangiana HOM05D004197 ORTHO05D004975 3.0e-27 124.4 62 90.3
Ciclev10022904m.g Citrus clementina HOM05D004197 ORTHO05D004975 3.0e-27 124.4 62 90.3
Eucgr.G02225 Eucalyptus grandis HOM05D004197 ORTHO05D004975 3.0e-27 124.4 62 90.3
MELO3C017759.2 Cucumis melo HOM05D004197 ORTHO05D004975 4.0e-27 124.0 62 88.7
QL10p055721 Quercus lobata HOM05D004197 ORTHO05D004975 4.0e-27 124.0 62 90.3
Hund04335 Selenicereus undatus HOM05D004197 ORTHO05D004975 4.0e-27 124.0 62 90.3
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 5.2e-27 123.6 62 87.1
CDE02G1869 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 6.8e-27 123.2 62 85.5
Glyma.17G164900 Glycine max HOM05D004197 ORTHO05D004975 6.8e-27 123.2 62 88.7
Ah.13g073520 Amaranthus hybridus HOM05D004197 ORTHO05D004975 8.9e-27 122.9 62 87.1
Lj1g0017974 Lotus japonicus HOM05D004197 ORTHO05D004975 8.9e-27 122.9 62 88.7
Psat1g223520 Pisum sativum HOM05D004197 ORTHO05D004975 1.2e-26 122.5 62 87.1
HPP92_007604 Vanilla planifolia HOM05D004197 ORTHO05D004975 1.2e-26 122.5 62 85.5
Os03g0207250 Oryza sativa ssp. japonica HOM05D004197 ORTHO05D004975 1.5e-26 122.1 62 85.5
CANSAT80G2644 Cannabis sativa HOM05D004197 ORTHO05D004975 2.6e-26 121.3 62 90.3
Peaxi162Scf00196g00222 Petunia axillaris HOM05D004197 ORTHO05D004975 4.4e-26 120.6 62 88.7
Aa31LG10G13940 Aethionema arabicum HOM05D004197 ORTHO05D004975 7.5e-26 119.8 62 85.5
Oeu016610.1 Olea europaea HOM05D004197 ORTHO05D004975 7.5e-26 119.8 62 87.1
Aqoxy7G00569 Aquilegia oxysepala HOM05D004197 ORTHO05D004975 9.8e-26 119.4 62 87.1
CAN.G525.23 Capsicum annuum HOM05D004197 ORTHO05D004975 9.8e-26 119.4 62 87.1
FvH4_7g06200 Fragaria vesca HOM05D004197 ORTHO05D004975 9.8e-26 119.4 62 87.1
Medtr8g022770 Medicago truncatula HOM05D004197 ORTHO05D004975 9.8e-26 119.4 62 85.5
Nitab4.5_0007872g0010 Nicotiana tabacum HOM05D004197 ORTHO05D004975 9.8e-26 119.4 62 87.1
CARHR170020 Cardamine hirsuta HOM05D004197 ORTHO05D004975 1.3e-25 119.0 62 85.5
Psat4g166320 Pisum sativum HOM05D004197 ORTHO05D004975 1.3e-25 119.0 62 82.3
Prupe.1G206900 Prunus persica HOM05D004197 ORTHO05D004975 1.3e-25 119.0 62 87.1
RcHm_v2.0_Chr1g0333831 Rosa chinensis HOM05D004197 ORTHO05D004975 1.3e-25 119.0 62 87.1
AL5G41720 Arabidopsis lyrata HOM05D004197 ORTHO05D004975 1.7e-25 118.6 62 85.5
Carub.0005s2637 Capsella rubella HOM05D004197 ORTHO05D004975 1.7e-25 118.6 62 85.5
Zm00001eb400580 Zea mays HOM05D004197 ORTHO05D004975 1.7e-25 118.6 62 83.9
AT3G59650 Arabidopsis thaliana HOM05D004197 ORTHO05D004975 2.2e-25 118.2 62 83.9
Cc02_g26370 Coffea canephora HOM05D004197 ORTHO05D004975 2.2e-25 118.2 62 85.5
FAN01G1948 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.9e-25 117.9 62 85.5
FAN06G1493 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.9e-25 117.9 62 85.5
HanXRQChr10g0286001 Helianthus annuus HOM05D004197 ORTHO05D004975 2.9e-25 117.9 62 83.9
Manes.06G021100 Manihot esculenta HOM05D004197 ORTHO05D004975 2.9e-25 117.9 62 85.5
ATR0733G162 Amborella trichopoda HOM05D004197 ORTHO05D004975 3.7e-25 117.5 62 82.3
ECA247G1539 Erigeron canadensis HOM05D004197 ORTHO05D004975 3.7e-25 117.5 62 85.5
TPR.G16667 Trifolium pratense HOM05D004197 ORTHO05D004975 3.7e-25 117.5 62 83.9
BcaB02g07455 Brassica carinata HOM05D004197 ORTHO05D004975 4.9e-25 117.1 62 85.5
BcaC07g40496 Brassica carinata HOM05D004197 ORTHO05D004975 4.9e-25 117.1 62 85.5
A09p51920 Brassica napus HOM05D004197 ORTHO05D004975 4.9e-25 117.1 62 85.5
C08p34650 Brassica napus HOM05D004197 ORTHO05D004975 4.9e-25 117.1 62 85.5
BolC8t51067H Brassica oleracea HOM05D004197 ORTHO05D004975 4.9e-25 117.1 62 85.5
BraA09t40628Z Brassica rapa HOM05D004197 ORTHO05D004975 4.9e-25 117.1 62 85.5
Thhalv10006316m.g Eutrema salsugineum HOM05D004197 ORTHO05D004975 4.9e-25 117.1 62 85.5
Nitab4.5_0000902g0310 Nicotiana tabacum HOM05D004197 ORTHO05D004975 4.9e-25 117.1 62 85.5
Migut.F01587 Erythranthe guttata HOM05D004197 ORTHO05D004975 6.4e-25 116.7 62 83.9
FAN03G3355 Fragaria x ananassa HOM05D004197 ORTHO05D004975 6.4e-25 116.7 62 83.9
Potri.013G126200 Populus trichocarpa HOM05D004197 ORTHO05D004975 6.4e-25 116.7 62 80.6
ECA240G1468 Erigeron canadensis HOM05D004197 ORTHO05D004975 8.3e-25 116.3 62 82.3
Lsat_1_v5_gn_6_33001 Lactuca sativa HOM05D004197 ORTHO05D004975 1.1e-24 115.9 62 85.5
PSO832G1844 Papaver somniferum HOM05D004197 ORTHO05D004975 1.1e-24 115.9 62 83.9
MSTRG.27564 Avicennia marina HOM05D004197 ORTHO05D004975 1.4e-24 115.5 62 85.5
BcaC08g44998 Brassica carinata HOM05D004197 ORTHO05D004975 1.4e-24 115.5 62 83.9
A07p24720 Brassica napus HOM05D000455 ORTHO05D000434 1.4e-24 115.5 62 83.9
C06p26290 Brassica napus HOM05D000455 ORTHO05D000434 1.4e-24 115.5 62 83.9
BolC6t37793H Brassica oleracea HOM05D004197 ORTHO05D004975 1.4e-24 115.5 62 83.9
BraA07t30117Z Brassica rapa HOM05D004197 ORTHO05D004975 1.4e-24 115.5 62 83.9
Sp5g03530 Schrenkiella parvula HOM05D004197 ORTHO05D004975 1.4e-24 115.5 62 83.9
Solyc04g014390.3 Solanum lycopersicum HOM05D004197 ORTHO05D004975 1.8e-24 115.2 62 83.9
Sopen04g006520 Solanum pennellii HOM05D004197 ORTHO05D004975 1.8e-24 115.2 62 83.9
MD08G1230600 Malus domestica HOM05D004197 ORTHO05D004975 2.4e-24 114.8 59 84.7
THA.LOC104804007 Tarenaya hassleriana HOM05D004197 ORTHO05D004975 2.4e-24 114.8 62 82.3
EL10Ac3g06082 Beta vulgaris HOM05D004197 ORTHO05D004975 4.1e-24 114.0 62 80.6
FAN24G1973 Fragaria x ananassa HOM05D004197 ORTHO05D004975 4.1e-24 114.0 62 82.3
Peaxi162Scf00474g00723 Petunia axillaris HOM05D004197 ORTHO05D004975 9.2e-24 112.8 62 83.9
TWI34G1638 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 9.2e-24 112.8 86 66.3
Lsat_1_v5_gn_5_190681 Lactuca sativa HOM05D004197 ORTHO05D004975 1.2e-23 112.5 62 83.9
PSO017G5565 Papaver somniferum HOM05D004197 ORTHO05D004975 1.2e-23 112.5 62 80.6
PSO675G0737 Papaver somniferum HOM05D004197 ORTHO05D004975 1.2e-23 112.5 62 80.6
PGSC0003DMG401023624 Solanum tuberosum HOM05D004197 ORTHO05D004975 2.7e-23 111.3 62 82.3
Cc03_g14030 Coffea canephora HOM05D004197 ORTHO05D004975 3.5e-23 110.9 62 83.9
PSO591G0183 Papaver somniferum HOM05D004197 ORTHO05D004975 3.5e-23 110.9 62 79.0
SalBow6G6028 Salvia bowleyana HOM05D004197 ORTHO05D004975 5.9e-23 110.2 62 79.0
SGA_v2.0_scaffold49G18240 Striga asiatica HOM05D004197 ORTHO05D004975 7.8e-23 109.8 62 83.9
QL04p073242 Quercus lobata HOM05D004197 ORTHO05D004975 1.3e-22 109.0 62 79.0
FvH4_2g13530 Fragaria vesca HOM05D004197 ORTHO05D004975 1.7e-22 108.6 62 80.6
Sp2g07880 Schrenkiella parvula HOM05D004197 ORTHO05D004975 2.3e-22 108.2 62 79.0
QL04p093649 Quercus lobata HOM05D004197 ORTHO05D004975 3.0e-22 107.8 62 77.4
unitig_899.g14470 Utricularia gibba HOM05D004197 ORTHO05D004975 1.5e-21 105.5 62 74.2
SEGI_18755 Sequoiadendron giganteum HOM05D004197 ORTHO05D004975 7.3e-21 103.2 62 69.4
unitig_736.g22525 Utricularia gibba HOM05D000398 ORTHO05D000551 9.5e-21 102.8 62 72.6
arahy.Tifrunner.gnm1.ann1.HJ8Q1I Arachis hypogaea HOM05D004197 ORTHO05D004975 1.2e-20 102.4 57 80.7
C04p24770 Brassica napus HOM05D004197 ORTHO05D004975 4.7e-20 100.5 57 80.7
BolC4t23981H Brassica oleracea HOM05D004197 ORTHO05D004975 4.7e-20 100.5 57 80.7
BcaC02g10824 Brassica carinata HOM05D004197 ORTHO05D004975 4.0e-19 97.4 57 78.9
arahy.Tifrunner.gnm1.ann1.XY21PC Arachis hypogaea HOM05D004197 ORTHO05D004975 1.2e-18 95.9 73 64.4
SHI24203 Sapria himalayana HOM05D004197 ORTHO05D004975 1.2e-18 95.9 83 56.6
Mapoly0027s0066 Marchantia polymorpha HOM05D004197 ORTHO05D004975 2.0e-18 95.1 62 67.7
Pp3c1_20100 Physcomitrium patens HOM05D004197 ORTHO05D004975 1.6e-15 85.5 62 58.1
AUR62002389 Chenopodium quinoa HOM05D004197 ORTHO05D004975 5.0e-14 80.5 155 34.2
Sabra13G0105500 Salix brachista HOM05D004197 ORTHO05D004975 2.5e-13 78.2 101 43.6
arahy.Tifrunner.gnm1.ann1.60591L Arachis hypogaea HOM05D004197 ORTHO05D004975 7.3e-13 76.6 71 62.0
Actinidia27110 Actinidia chinensis HOM05D004197 ORTHO05D004975 1.2e-12 75.9 42 83.3
Gorai.004G083000 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.8e-12 74.7 37 89.2
Atru.chr12.1273 Acer truncatum HOM05D004197 ORTHO05D004975 4.7e-12 73.9 35 94.3
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 6.2e-12 73.6 37 86.5
Lj3g0000340 Lotus japonicus HOM05D004197 ORTHO05D004975 8.1e-12 73.2 66 57.6
SMO347G0376 Selaginella moellendorffii HOM05D004197 ORTHO05D004975 8.1e-12 73.2 62 51.6
Atru.chr12.1301 Acer truncatum HOM05D004197 ORTHO05D004975 6.8e-11 70.1 33 93.9
Gohir.D02G135200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.0e-10 68.6 33 90.9
Gohir.D08G078000 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.0e-10 68.6 35 85.7
Gohir.D08G220700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.0e-10 68.6 33 90.9
Gohir.D10G075200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.0e-10 68.6 33 90.9
MCO09G643 Micromonas commoda HOM05D004197 ORTHO05D004975 2.6e-10 68.2 62 45.2
HanXRQChr09g0264591 Helianthus annuus HOM05D004197 ORTHO05D004975 5.8e-10 67.0 36 83.3
Gorai.011G081000 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.3e-09 65.9 32 90.6
Glyma.07G044001 Glycine max HOM05D004197 ORTHO05D004975 6.4e-09 63.5 33 84.8
Cre06.g270650 Chlamydomonas reinhardtii HOM05D004197 ORTHO05D004975 1.4e-08 62.4 54 50.0
Gorai.005G151300 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.9e-08 62.0 33 81.8
Zm00001eb007240 Zea mays HOM05D004197 ORTHO05D004975 1.9e-08 62.0 33 78.8
Lsat_1_v5_gn_6_23540 Lactuca sativa HOM05D004197 ORTHO05D004975 2.4e-08 61.6 49 63.3
Rhsim02G0084000 Rhododendron simsii HOM05D004197 ORTHO05D004975 2.4e-08 61.6 29 89.7
DCAR_029674 Daucus carota HOM05D004197 ORTHO05D004975 2.1e-07 58.5 33 78.8
DCAR_009572 Daucus carota HOM05D004197 ORTHO05D004975 4.6e-07 57.4 33 75.8
SalBow2G3321 Salvia bowleyana HOM05D004197 ORTHO05D004975 1.0e-06 56.2 33 78.8
TPR.G31074 Trifolium pratense HOM05D004197 ORTHO05D006502 2.3e-06 55.1 37 67.6


User provided reference genes

Program Settings