Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.1e-122 443.4 232 100.0
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 4.1e-77 292.0 229 69.4
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 3.6e-73 278.9 233 65.2
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 8.6e-67 257.7 224 62.5
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 1.6e-65 253.4 229 58.1
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 5.8e-63 245.0 216 59.7
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 3.8e-62 242.3 218 60.1
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 9.2e-61 237.7 202 59.9
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.7e-59 233.4 194 63.9
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.2e-57 227.3 212 53.8
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 4.0e-56 222.2 163 69.3
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 2.0e-55 219.9 214 51.9
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 2.6e-55 219.5 164 68.9
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 7.6e-55 218.0 236 53.4
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 2.9e-54 216.1 156 69.2
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 2.9e-54 216.1 201 58.7
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 6.4e-54 214.9 232 52.2
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 6.4e-54 214.9 191 60.7
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 6.4e-54 214.9 226 52.2
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 1.4e-53 213.8 182 58.8
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 2.4e-53 213.0 167 65.9
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 2.4e-53 213.0 193 62.2
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 4.2e-53 212.2 156 69.9
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 7.1e-53 211.5 223 54.3
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 9.3e-53 211.1 201 57.2
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 1.6e-52 210.3 201 57.2
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 2.7e-52 209.5 213 53.5
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 3.9e-51 205.7 205 53.7
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 3.9e-51 205.7 231 52.4
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 1.5e-50 203.8 185 57.8
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 1.9e-50 203.4 143 69.2
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 1.9e-50 203.4 167 65.3
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.3e-50 202.2 156 64.1
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.3e-50 202.2 156 64.7
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 4.3e-50 202.2 163 62.0
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 5.6e-50 201.8 155 66.5
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 1.3e-49 200.7 163 59.5
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 8.1e-49 198.0 157 64.3
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 1.1e-48 197.6 161 59.0
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 1.8e-48 196.8 194 54.1
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 5.3e-48 195.3 196 55.6
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 1.2e-47 194.1 204 51.5
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 1.5e-47 193.7 223 50.7
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 9.9e-47 191.0 204 51.0
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 4.9e-46 188.7 201 53.2
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.1e-45 187.6 223 48.4
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 1.4e-45 187.2 169 56.2
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.9e-45 186.8 200 53.5
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 5.4e-45 185.3 228 46.9
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.6e-44 183.7 174 53.4
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 1.3e-43 180.6 128 69.5
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.8e-43 180.3 224 47.8
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.5e-42 176.4 161 60.2
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 3.3e-42 176.0 196 53.1
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 7.4e-42 174.9 228 45.2
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 2.8e-41 172.9 162 56.2
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 1.4e-40 170.6 163 55.2
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 2.6e-39 166.4 167 55.1
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 9.9e-39 164.5 226 46.5
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 2.9e-38 162.9 161 54.0
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 2.9e-38 162.9 158 50.6
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 3.8e-38 162.5 179 50.8
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 1.9e-37 160.2 121 66.9
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 1.3e-35 154.1 204 43.6
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 3.7e-33 146.0 194 43.8
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 4.8e-33 145.6 192 44.8
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 4.8e-33 145.6 178 48.3
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 2.4e-32 143.3 171 46.8
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 5.3e-32 142.1 115 56.5
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 1.2e-31 141.0 151 49.0
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 4.5e-31 139.0 100 66.0
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.9e-29 133.7 133 52.6
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 7.1e-29 131.7 150 44.0
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 2.7e-28 129.8 132 52.3
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 6.0e-28 128.6 141 50.4
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 2.5e-26 123.2 144 43.1
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.3e-26 122.5 91 70.3
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 2.2e-25 120.2 134 47.8
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 1.5e-23 114.0 117 49.6
ClCG06G001080 Citrullus lanatus HOM05D003796 ORTHO05D004486 2.2e-22 110.2 146 41.8
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 2.9e-22 109.8 218 34.4
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 3.8e-22 109.4 160 41.2
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 6.5e-22 108.6 215 31.6
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 1.9e-21 107.1 120 41.7
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 2.5e-21 106.7 151 38.4
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 2.5e-21 106.7 166 35.5
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 4.2e-21 105.9 160 38.8
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 4.2e-21 105.9 147 40.8
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 9.4e-21 104.8 223 31.8
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 1.2e-20 104.4 203 33.5
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.2e-20 104.4 156 37.2
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.2e-20 104.4 156 37.2
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 1.6e-20 104.0 201 32.8
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.6e-20 104.0 104 55.8
Sabra13G0104400 Salix brachista HOM05D003796 ORTHO05D004486 1.6e-20 104.0 77 64.9
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 1.6e-20 104.0 203 32.5
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.1e-20 103.6 89 60.7
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 3.6e-20 102.8 182 34.6
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 3.6e-20 102.8 163 35.6
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 4.6e-20 102.4 160 38.8
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 4.6e-20 102.4 205 32.7
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 4.6e-20 102.4 125 40.8
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 4.6e-20 102.4 157 35.0
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 4.6e-20 102.4 187 34.8
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 6.1e-20 102.1 215 32.1
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 7.9e-20 101.7 151 39.1
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.0e-19 101.3 166 36.7
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 1.0e-19 101.3 148 39.2
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 1.4e-19 100.9 194 33.0
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 1.4e-19 100.9 166 39.2
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 1.8e-19 100.5 157 38.2
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 2.3e-19 100.1 163 38.7
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 2.3e-19 100.1 175 34.9
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 3.0e-19 99.8 121 40.5
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 3.0e-19 99.8 118 41.5
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 3.0e-19 99.8 135 37.8
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 3.9e-19 99.4 201 34.8
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 3.9e-19 99.4 151 38.4
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 3.9e-19 99.4 151 36.4
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 3.9e-19 99.4 155 38.1
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 5.1e-19 99.0 182 34.1
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 6.7e-19 98.6 169 34.3
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 8.8e-19 98.2 129 41.1
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 8.8e-19 98.2 171 36.3
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 8.8e-19 98.2 150 42.0
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 8.8e-19 98.2 134 39.6
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 1.1e-18 97.8 207 31.9
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 1.1e-18 97.8 165 33.3
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 1.1e-18 97.8 154 38.3
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.1e-18 97.8 89 58.4
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.1e-18 97.8 152 35.5
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 1.5e-18 97.4 218 31.2
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.5e-18 97.4 159 35.8
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.5e-18 97.4 159 35.8
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 1.9e-18 97.1 209 33.5
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 2.5e-18 96.7 196 32.1
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 3.3e-18 96.3 105 42.9
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 4.3e-18 95.9 152 36.2
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 7.4e-18 95.1 160 37.5
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 9.7e-18 94.7 154 37.7
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 1.3e-17 94.4 154 37.0
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 1.3e-17 94.4 153 33.3
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 1.7e-17 94.0 164 36.0
QL10p054574 Quercus lobata HOM05D003796 ORTHO05D004486 1.7e-17 94.0 72 69.4
QL93p1902_0789 Quercus lobata HOM05D003796 ORTHO05D004486 1.7e-17 94.0 72 69.4
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.7e-17 94.0 159 35.8
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 4.8e-17 92.4 156 34.0
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 4.8e-17 92.4 168 36.9
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 6.3e-17 92.0 152 38.8
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 1.4e-16 90.9 114 42.1
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 3.1e-16 89.7 134 35.8
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 1.5e-15 87.4 169 33.1
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.4e-15 86.3 180 32.2
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 4.5e-15 85.9 161 32.9
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 1.7e-14 84.0 152 33.6
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 8.5e-14 81.6 118 38.1
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 8.5e-14 81.6 91 45.1
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 1.4e-13 80.9 151 33.1
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 5.5e-13 79.0 131 35.9
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.6e-12 77.4 147 36.7
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.7e-12 76.6 192 29.7
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 7.9e-12 75.1 192 30.2
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 3.3e-10 69.7 175 26.3
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 2.0e-07 60.5 104 33.7
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 2.6e-07 60.1 72 40.3
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.6e-07 60.1 73 42.5
CSS0039071 Camellia sinensis var. sinensis HOM05D055008 ORTHO05D043295 1.7e-06 57.4 52 57.7
Haze_01371 Corylus avellana HOM05D003796 ORTHO05D004486 1.7e-06 57.4 103 39.8
CSS0019445 Camellia sinensis var. sinensis HOM05D055008 ORTHO05D043295 2.2e-06 57.0 44 65.9
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 2.2e-06 57.0 88 42.0


User provided reference genes

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