Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0150F.1_g066660 Hydrangea macrophylla HOM05D005578 ORTHO05D006969 2.0e-43 178.7 89 100.0
Hma1.2p1_0150F.1_g066670 Hydrangea macrophylla HOM05D005578 ORTHO05D006969 1.6e-37 159.1 81 100.0
Actinidia27108 Actinidia chinensis HOM05D005578 ORTHO05D006969 8.3e-26 120.2 78 76.9
Dinv33195 Davidia involucrata HOM05D005578 ORTHO05D006969 3.1e-25 118.2 81 75.3
GSVIVG01038127001 Vitis vinifera HOM05D005578 ORTHO05D006969 7.0e-25 117.1 84 69.0
CSS0000228 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 1.0e-23 113.2 76 75.0
CSS0036062 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 1.0e-23 113.2 76 75.0
Ciclev10020255m.g Citrus clementina HOM05D005578 ORTHO05D006969 6.5e-23 110.5 79 69.6
CSS0022855 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 1.9e-22 109.0 75 73.3
CSS0020752 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 2.5e-22 108.6 76 72.4
Eucgr.A00019 Eucalyptus grandis HOM05D005578 ORTHO05D006969 1.6e-21 105.9 79 64.6
Gohir.D09G171900 Gossypium hirsutum HOM05D005578 ORTHO05D006969 8.0e-21 103.6 79 65.8
Gorai.006G193800 Gossypium raimondii HOM05D005578 ORTHO05D006969 1.0e-20 103.2 79 65.8
TAR365G0588 Trochodendron aralioides HOM05D005578 ORTHO05D006969 1.4e-20 102.8 69 78.3
Gohir.A09G176200 Gossypium hirsutum HOM05D005578 ORTHO05D006969 2.3e-20 102.1 79 65.8
Lj3A157G51 Lonicera japonica HOM05D005578 ORTHO05D006969 3.0e-20 101.7 76 67.1
Atru.chr4.1387 Acer truncatum HOM05D005578 ORTHO05D006969 5.2e-20 100.9 76 68.4
Duzib084G0701 Durio zibethinus HOM05D005578 ORTHO05D006969 1.5e-19 99.4 79 62.0
vmacro00704 Vaccinium macrocarpon HOM05D005578 ORTHO05D006969 1.5e-19 99.4 76 69.7
COL.COLO4_38536 Corchorus olitorius HOM05D005578 ORTHO05D006969 2.0e-19 99.0 79 63.3
Thecc.03G041600 Theobroma cacao HOM05D005578 ORTHO05D006969 2.0e-19 99.0 78 62.8
SalBow4G1988 Salvia bowleyana HOM05D005578 ORTHO05D006969 3.4e-19 98.2 83 63.9
Lalb_Chr10g0096771 Lupinus albus HOM05D005578 ORTHO05D006969 4.4e-19 97.8 84 61.9
Prupe.1G080200 Prunus persica HOM05D005578 ORTHO05D006969 4.4e-19 97.8 79 63.3
QL10p053362 Quercus lobata HOM05D005578 ORTHO05D006969 4.4e-19 97.8 79 62.0
QL10p054496 Quercus lobata HOM05D005578 ORTHO05D006969 4.4e-19 97.8 79 62.0
Potri.006G123700 Populus trichocarpa HOM05D005578 ORTHO05D006969 7.5e-19 97.1 84 59.5
Sabra06G0097900 Salix brachista HOM05D005578 ORTHO05D006969 7.5e-19 97.1 84 59.5
SalBow4G1580 Salvia bowleyana HOM05D005578 ORTHO05D006969 1.3e-18 96.3 83 62.7
Migut.N01914 Erythranthe guttata HOM05D005578 ORTHO05D006969 1.7e-18 95.9 79 64.6
MD04G1048400 Malus domestica HOM05D005578 ORTHO05D006969 2.2e-18 95.5 79 63.3
Nn3g18569 Nelumbo nucifera HOM05D005578 ORTHO05D006969 2.2e-18 95.5 73 67.1
Manes.04G036900 Manihot esculenta HOM05D005578 ORTHO05D006969 3.7e-18 94.7 79 62.0
Nitab4.5_0000387g0110 Nicotiana tabacum HOM05D005578 ORTHO05D006969 8.3e-18 93.6 81 60.5
TWI63G0500 Tripterygium wilfordii HOM05D005578 ORTHO05D006969 8.3e-18 93.6 82 62.2
CAN.G128.150 Capsicum annuum HOM05D005578 ORTHO05D006969 1.1e-17 93.2 79 60.8
Ca_12803_v3 Cicer arietinum L. HOM05D005578 ORTHO05D006969 1.4e-17 92.8 79 63.3
Ca_12815_v3 Cicer arietinum L. HOM05D005578 ORTHO05D006969 1.4e-17 92.8 79 63.3
ClCG07G015240 Citrullus lanatus HOM05D005578 ORTHO05D006969 1.8e-17 92.4 83 60.2
CiPaw.02G101100 Carya illinoinensis HOM05D005578 ORTHO05D006969 3.1e-17 91.7 78 62.8
Psat6g034120 Pisum sativum HOM05D005578 ORTHO05D006969 4.1e-17 91.3 79 60.8
FAN07G2607 Fragaria x ananassa HOM05D005578 ORTHO05D006969 5.4e-17 90.9 79 60.8
FAN22G0827 Fragaria x ananassa HOM05D005578 ORTHO05D006969 7.0e-17 90.5 78 60.3
CsaV3_4G002830 Cucumis sativus L. HOM05D005578 ORTHO05D006969 9.1e-17 90.1 83 59.0
PGR083G2150 Punica granatum HOM05D005578 ORTHO05D006969 9.1e-17 90.1 81 55.6
Medtr1g008370 Medicago truncatula HOM05D005578 ORTHO05D006969 1.2e-16 89.7 79 59.5
Peaxi162Scf00568g00519 Petunia axillaris HOM05D005578 ORTHO05D006969 1.2e-16 89.7 76 61.8
RcHm_v2.0_Chr4g0406211 Rosa chinensis HOM05D005578 ORTHO05D006969 1.2e-16 89.7 79 59.5
Sopen10g032050 Solanum pennellii HOM05D005578 ORTHO05D006969 1.2e-16 89.7 75 62.7
PGSC0003DMG400028219 Solanum tuberosum HOM05D005578 ORTHO05D006969 1.2e-16 89.7 75 62.7
FAN12G1674 Fragaria x ananassa HOM05D005578 ORTHO05D006969 1.6e-16 89.4 79 59.5
FAN12G2406 Fragaria x ananassa HOM05D005578 ORTHO05D006969 1.6e-16 89.4 79 59.5
Lj2g0024445 Lotus japonicus HOM05D005578 ORTHO05D006969 1.6e-16 89.4 75 60.0
Solyc10g081540.2 Solanum lycopersicum HOM05D005578 ORTHO05D006969 1.6e-16 89.4 75 62.7
Cc00_g24800 Coffea canephora HOM05D005578 ORTHO05D006969 2.0e-16 89.0 78 60.3
ECA232G2403 Erigeron canadensis HOM05D005578 ORTHO05D006969 2.0e-16 89.0 76 61.8
Cpa.g.sc9.352 Carica papaya HOM05D005578 ORTHO05D006969 2.7e-16 88.6 76 57.9
MSTRG.28018 Avicennia marina HOM05D005578 ORTHO05D006969 3.5e-16 88.2 78 61.5
Glyma.15G008200 Glycine max HOM05D005578 ORTHO05D006969 5.9e-16 87.4 79 58.2
Lj1g0014139 Lotus japonicus HOM05D005578 ORTHO05D006969 7.7e-16 87.0 81 56.8
MBI08_g25556_MAGBIO Magnolia biondii HOM05D005578 ORTHO05D006969 7.7e-16 87.0 74 62.2
TPR.G12104 Trifolium pratense HOM05D005578 ORTHO05D006969 1.0e-15 86.7 79 58.2
Hund00394 Selenicereus undatus HOM05D005578 ORTHO05D006969 1.3e-15 86.3 72 59.7
CANSAT78G2511 Cannabis sativa HOM05D005578 ORTHO05D006969 1.7e-15 85.9 78 57.7
PSO478G3531 Papaver somniferum HOM05D005578 ORTHO05D006969 2.3e-15 85.5 92 50.0
Cc03_g13760 Coffea canephora HOM05D005578 ORTHO05D006969 2.9e-15 85.1 78 59.0
Phvul.005G177500 Phaseolus vulgaris HOM05D005578 ORTHO05D006969 6.6e-15 84.0 79 57.0
VMungo1080G0492 Vigna mungo HOM05D005578 ORTHO05D006969 6.6e-15 84.0 79 58.2
Glyma.13G365067 Glycine max HOM05D005578 ORTHO05D006969 1.1e-14 83.2 78 55.1
Sc18g0007160 Simmondsia chinensis HOM05D005578 ORTHO05D006969 1.5e-14 82.8 75 60.0
Aqoxy5G03977 Aquilegia oxysepala HOM05D005578 ORTHO05D006969 1.9e-14 82.4 80 52.5
Thhalv10028620m.g Eutrema salsugineum HOM05D005578 ORTHO05D006969 1.9e-14 82.4 77 57.1
Ah.01g024150 Amaranthus hybridus HOM05D005578 ORTHO05D006969 4.2e-14 81.3 72 58.3
arahy.Tifrunner.gnm1.ann1.22GNET Arachis hypogaea HOM05D005578 ORTHO05D006969 7.2e-14 80.5 84 54.8
arahy.Tifrunner.gnm1.ann1.SET2JR Arachis hypogaea HOM05D005578 ORTHO05D006969 7.2e-14 80.5 84 54.8
A09p51890 Brassica napus HOM05D005578 ORTHO05D006969 1.2e-13 79.7 78 53.8
BraA09t40625Z Brassica rapa HOM05D005578 ORTHO05D006969 1.2e-13 79.7 78 53.8
CANSAT35G1372 Cannabis sativa HOM05D005578 ORTHO05D006969 1.2e-13 79.7 79 54.4
HanXRQChr02g0059791 Helianthus annuus HOM05D005578 ORTHO05D006969 1.2e-13 79.7 77 53.2
PSO017G0139 Papaver somniferum HOM05D005578 ORTHO05D006969 1.2e-13 79.7 94 48.9
AL5G41540 Arabidopsis lyrata HOM05D005578 ORTHO05D006969 1.6e-13 79.3 77 55.8
AUR62027084 Chenopodium quinoa HOM05D005578 ORTHO05D006969 2.1e-13 79.0 82 54.9
TPR.G17732 Trifolium pratense HOM05D005578 ORTHO05D006969 2.8e-13 78.6 79 53.2
AL5G41640 Arabidopsis lyrata HOM05D005578 ORTHO05D006969 3.6e-13 78.2 77 54.5
AUR62030923 Chenopodium quinoa HOM05D005578 ORTHO05D006969 3.6e-13 78.2 73 56.2
Sp5g03550 Schrenkiella parvula HOM05D005578 ORTHO05D006969 3.6e-13 78.2 77 54.5
PSO675G5381 Papaver somniferum HOM05D005578 ORTHO05D006969 4.7e-13 77.8 84 50.0
BcaC07g40493 Brassica carinata HOM05D005578 ORTHO05D006969 8.0e-13 77.0 78 52.6
C08p34620 Brassica napus HOM05D005578 ORTHO05D006969 8.0e-13 77.0 78 52.6
BolC8t51064H Brassica oleracea HOM05D005578 ORTHO05D006969 8.0e-13 77.0 78 52.6
Carub.0005s2633 Capsella rubella HOM05D005578 ORTHO05D006969 1.0e-12 76.6 77 53.2
Aa31LG10G13930 Aethionema arabicum HOM05D005578 ORTHO05D006969 1.8e-12 75.9 77 54.5
CARHR220950 Cardamine hirsuta HOM05D005578 ORTHO05D006969 2.3e-12 75.5 77 51.9
SGA_v2.0_scaffold81G26092 Striga asiatica HOM05D005578 ORTHO05D006969 2.3e-12 75.5 78 55.1
BcaC07g40470 Brassica carinata HOM05D005578 ORTHO05D006969 3.0e-12 75.1 79 53.2
Haze_01375 Corylus avellana HOM05D005578 ORTHO05D006969 3.0e-12 75.1 71 54.9
AT3G59630 Arabidopsis thaliana HOM05D005578 ORTHO05D006969 6.8e-12 73.9 77 53.2
THA.LOC104802321 Tarenaya hassleriana HOM05D005578 ORTHO05D006969 1.5e-11 72.8 72 54.2
Rhsim09G0010700 Rhododendron simsii HOM05D005578 ORTHO05D006969 2.0e-11 72.4 71 60.6
EL10Ac9g22122 Beta vulgaris HOM05D005578 ORTHO05D006969 4.4e-11 71.2 75 49.3
HPP92_007603 Vanilla planifolia HOM05D005578 ORTHO05D006969 4.9e-10 67.8 77 45.5
CDE08G0459 Ceratophyllum demersum HOM05D005578 ORTHO05D006969 8.3e-10 67.0 75 48.0
SEGI_35608 Sequoiadendron giganteum HOM05D005578 ORTHO05D006969 3.1e-09 65.1 85 45.9
Lsat_1_v5_gn_2_34381 Lactuca sativa HOM05D005578 ORTHO05D006969 1.2e-08 63.2 63 54.0
SHI16665 Sapria himalayana HOM05D005578 ORTHO05D006969 7.8e-08 60.5 79 43.0
DCAR_028436 Daucus carota HOM05D005578 ORTHO05D006969 1.7e-07 59.3 54 57.4
Os11g0265600 Oryza sativa ssp. japonica HOM05D005578 ORTHO05D006969 3.9e-07 58.2 76 43.4
Zm00001eb064030 Zea mays HOM05D005578 ORTHO05D006969 5.0e-07 57.8 81 40.7
AagrBONN_evm.TU.Sc2ySwM_117.2191 Anthoceros agrestis HOM05D005578 ORTHO05D006969 5.6e-06 54.3 79 43.0


User provided reference genes

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