Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 8.7e-136 486.9 232 100.0
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.6e-116 422.2 232 85.3
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 3.5e-116 421.8 232 85.8
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.3e-115 419.9 232 84.9
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.3e-115 419.9 232 84.5
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 6.7e-112 407.5 232 81.9
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.2e-111 406.8 232 81.5
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 1.5e-111 406.4 232 81.0
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 3.3e-111 405.2 232 81.5
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 3.3e-111 405.2 232 81.5
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 3.3e-111 405.2 232 81.9
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 4.4e-111 404.8 232 80.6
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 4.4e-111 404.8 226 82.7
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 9.7e-111 403.7 232 81.0
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.3e-110 403.3 232 80.6
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 2.2e-110 402.5 232 81.0
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 8.2e-110 400.6 232 81.0
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 1.1e-109 400.2 232 80.6
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 1.4e-109 399.8 232 79.7
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 2.4e-109 399.1 232 80.2
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 2.0e-108 396.0 236 79.2
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 2.7e-108 395.6 226 81.0
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 5.9e-108 394.4 234 79.9
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 1.0e-107 393.7 230 80.4
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.7e-107 392.9 243 75.3
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 2.2e-107 392.5 226 80.1
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 3.8e-107 391.7 227 79.7
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 5.0e-107 391.3 226 78.8
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 6.5e-107 391.0 243 77.0
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 6.5e-107 391.0 231 79.2
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 6.5e-107 391.0 231 79.2
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 8.5e-107 390.6 229 79.9
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 8.5e-107 390.6 232 80.6
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 1.9e-106 389.4 227 79.3
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 2.5e-106 389.0 232 79.7
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 5.5e-106 387.9 226 79.2
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 7.2e-106 387.5 232 78.9
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 2.1e-105 386.0 236 78.8
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 2.7e-105 385.6 232 79.3
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.7e-105 385.6 242 77.3
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 8.0e-105 384.0 232 79.3
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 8.0e-105 384.0 232 78.0
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 3.0e-104 382.1 232 77.6
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 5.2e-104 381.3 239 76.6
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 3.4e-103 378.6 224 78.1
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 5.7e-103 377.9 227 77.5
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.3e-102 376.7 239 76.6
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 1.7e-102 376.3 230 76.5
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 2.8e-102 375.6 239 77.0
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 4.8e-102 374.8 237 75.9
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 4.8e-102 374.8 232 71.6
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 4.8e-102 374.8 226 76.5
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 1.1e-101 373.6 227 76.2
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.1e-101 373.6 239 76.2
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 7.0e-101 370.9 227 75.3
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 7.0e-101 370.9 227 74.4
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 9.1e-101 370.5 233 78.1
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 1.3e-99 366.7 232 72.8
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 5.0e-99 364.8 227 73.1
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 6.5e-99 364.4 232 72.8
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 8.6e-99 364.0 231 72.3
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 8.6e-99 364.0 227 74.4
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 2.5e-98 362.5 226 74.8
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 4.2e-98 361.7 230 73.5
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 5.5e-98 361.3 205 84.9
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 5.5e-98 361.3 229 73.8
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 5.5e-98 361.3 227 72.7
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 9.5e-98 360.5 229 70.3
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 9.5e-98 360.5 232 72.0
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.2e-97 360.1 231 74.0
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 1.6e-97 359.8 231 72.7
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 2.8e-97 359.0 238 71.8
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 6.1e-97 357.8 245 69.4
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 6.1e-97 357.8 245 69.4
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.4e-96 356.7 227 71.4
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 1.8e-96 356.3 232 71.1
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 3.0e-96 355.5 232 72.0
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 6.8e-96 354.4 227 74.4
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.5e-95 353.2 227 70.9
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 1.5e-95 353.2 232 70.7
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 2.0e-95 352.8 227 73.1
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 3.4e-95 352.1 232 72.8
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.3e-94 350.1 229 70.3
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 2.2e-94 349.4 228 69.7
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 4.9e-94 348.2 227 70.9
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 2.4e-93 345.9 235 68.9
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 1.6e-92 343.2 237 70.0
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 1.6e-92 343.2 232 70.7
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 2.0e-92 342.8 234 68.8
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 2.0e-92 342.8 227 73.1
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 7.8e-92 340.9 241 66.8
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 1.0e-91 340.5 248 66.5
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 2.3e-91 339.3 229 67.7
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 2.9e-91 339.0 227 70.9
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 5.0e-91 338.2 232 72.4
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 8.6e-91 337.4 259 65.3
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 2.5e-90 335.9 229 67.7
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 5.6e-90 334.7 227 68.7
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 2.8e-89 332.4 231 68.8
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 2.8e-89 332.4 232 67.2
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 6.1e-89 331.3 232 67.2
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 4.0e-88 328.6 232 69.0
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 1.5e-87 326.6 232 65.9
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 1.5e-87 326.6 236 67.8
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 1.7e-86 323.2 227 67.8
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 2.2e-86 322.8 232 71.1
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 5.4e-85 318.2 187 79.1
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 5.9e-84 314.7 230 64.8
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 7.8e-84 314.3 277 59.6
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 1.7e-83 313.2 237 64.1
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 8.0e-81 304.3 264 60.2
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 8.0e-81 304.3 288 55.9
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 8.0e-81 304.3 288 55.9
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 2.2e-78 296.2 198 71.7
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 2.4e-77 292.7 227 63.9
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 4.1e-77 292.0 229 60.3
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 9.2e-77 290.8 226 57.5
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 3.5e-76 288.9 226 59.3
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 4.6e-76 288.5 228 59.6
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 3.9e-75 285.4 243 59.7
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 2.8e-73 279.3 228 62.7
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 1.2e-71 273.9 226 57.5
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 2.2e-70 269.6 227 59.0
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 6.4e-70 268.1 209 63.6
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 9.2e-69 264.2 232 55.6
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 1.2e-68 263.8 227 58.1
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 6.0e-68 261.5 187 71.1
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 7.8e-68 261.2 187 70.6
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 1.8e-64 250.0 176 69.3
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 1.1e-61 240.7 227 49.8
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 4.1e-61 238.8 223 52.0
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 9.2e-61 237.7 260 49.6
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 4.6e-60 235.3 260 49.2
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.7e-59 233.4 227 53.3
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 3.9e-59 232.3 227 52.9
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 5.1e-59 231.9 145 75.2
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.1e-58 230.7 227 52.4
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 2.0e-55 219.9 232 50.9
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.6e-52 210.3 231 46.3
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 6.0e-52 208.4 228 47.4
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.6e-49 200.3 115 80.9
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 2.8e-49 199.5 115 80.9
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 3.6e-49 199.1 124 72.6
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 1.4e-48 197.2 227 42.3
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 1.2e-47 194.1 113 76.1
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 2.2e-46 189.9 136 67.6
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 3.8e-46 189.1 281 39.1
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.4e-45 187.2 115 76.5
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 9.3e-45 184.5 224 42.4
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 9.3e-45 184.5 115 74.8
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 1.8e-43 180.3 115 74.8
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 8.7e-43 177.9 106 75.5
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 1.1e-42 177.6 115 69.6
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 5.6e-42 175.3 115 72.2
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 9.6e-42 174.5 453 29.8
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 2.8e-41 172.9 234 39.3
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 2.8e-41 172.9 111 72.1
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 3.7e-41 172.6 196 48.5
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 3.7e-41 172.6 115 71.3
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 5.3e-40 168.7 115 67.8
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 6.9e-40 168.3 115 67.0
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 2.9e-38 162.9 104 72.1
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 2.4e-37 159.8 86 86.0
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 6.2e-33 145.2 138 56.5
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.0e-30 137.9 114 56.1
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.2e-28 131.0 174 46.0
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.8e-25 119.0 78 67.9
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 1.8e-24 117.1 78 67.9
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 4.6e-20 102.4 75 61.3
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 7.9e-20 101.7 72 62.5
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.3e-17 94.4 51 84.3
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 8.2e-17 91.7 56 73.2
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.4e-13 80.9 47 74.5
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.4e-13 80.9 46 76.1
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.4e-13 80.9 46 76.1
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 1.6e-12 77.4 51 70.6
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 1.1e-10 71.2 45 73.3
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 7.4e-10 68.6 43 74.4
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 7.0e-08 62.0 37 78.4


User provided reference genes

Program Settings