Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0148F.1_g065950 Hydrangea macrophylla HOM05D001112 ORTHO05D036420 2.1e-56 222.2 123 100.0
TAR628G0255 Trochodendron aralioides HOM05D001112 ORTHO05D000996 1.5e-22 109.8 102 59.8
Nn1g05258 Nelumbo nucifera HOM05D001112 ORTHO05D000996 5.0e-21 104.8 103 58.3
CSS0038201 Camellia sinensis var. sinensis HOM05D001112 ORTHO05D000996 1.9e-20 102.8 103 55.3
COL.COLO4_11051 Corchorus olitorius HOM05D001112 ORTHO05D000996 3.6e-19 98.6 103 53.4
vmacro12936 Vaccinium macrocarpon HOM05D001112 ORTHO05D000996 4.6e-19 98.2 96 58.3
GSVIVG01022186001 Vitis vinifera HOM05D001112 ORTHO05D000996 4.6e-19 98.2 103 53.4
PGR004G1937 Punica granatum HOM05D001112 ORTHO05D000996 6.1e-19 97.8 84 64.3
Duzib264G1240 Durio zibethinus HOM05D001112 ORTHO05D000996 1.4e-18 96.7 108 52.8
Rhsim10G0156400 Rhododendron simsii HOM05D001112 ORTHO05D000996 1.4e-18 96.7 106 55.7
Thecc.01G107600 Theobroma cacao HOM05D001112 ORTHO05D000996 3.9e-18 95.1 103 51.5
Duzib147G0201 Durio zibethinus HOM05D001112 ORTHO05D000996 5.1e-18 94.7 89 58.4
Nn5g29003 Nelumbo nucifera HOM05D001112 ORTHO05D000996 8.8e-18 94.0 103 53.4
PSO447G0197 Papaver somniferum HOM05D001112 ORTHO05D000996 8.8e-18 94.0 106 53.8
ClCG01G019010 Citrullus lanatus HOM05D001112 ORTHO05D000996 9.7e-17 90.5 103 52.4
CsaV3_6G045700 Cucumis sativus L. HOM05D001112 ORTHO05D000996 9.7e-17 90.5 103 51.5
Potri.005G079900 Populus trichocarpa HOM05D001112 ORTHO05D000996 9.7e-17 90.5 99 53.5
PSO210G1326 Papaver somniferum HOM05D001112 ORTHO05D000996 2.2e-16 89.4 106 50.9
Gorai.008G103400 Gossypium raimondii HOM05D001112 ORTHO05D000996 3.7e-16 88.6 82 61.0
MBI02_g19399_MAGBIO Magnolia biondii HOM05D001112 ORTHO05D000996 3.7e-16 88.6 103 49.5
Manes.12G138900 Manihot esculenta HOM05D001112 ORTHO05D000996 4.8e-16 88.2 103 50.5
Solyc04g054490.3 Solanum lycopersicum HOM05D001112 ORTHO05D000996 4.8e-16 88.2 90 53.3
PGSC0003DMG400008703 Solanum tuberosum HOM05D001112 ORTHO05D000996 4.8e-16 88.2 90 53.3
RcHm_v2.0_Chr2g0115521 Rosa chinensis HOM05D001112 ORTHO05D000996 6.3e-16 87.8 108 50.0
MELO3C007780.2 Cucumis melo HOM05D001112 ORTHO05D000996 8.2e-16 87.4 103 49.5
Sed0007096 Sechium edule HOM05D001112 ORTHO05D000996 8.2e-16 87.4 103 51.5
CAN.G618.5 Capsicum annuum HOM05D001112 ORTHO05D000996 2.4e-15 85.9 96 51.0
TWI53G0009 Tripterygium wilfordii HOM05D001112 ORTHO05D000996 3.1e-15 85.5 99 52.5
GSVIVG01008978001 Vitis vinifera HOM05D001112 ORTHO05D000996 5.3e-15 84.7 90 48.9
Cfa002720 Carpinus fangiana HOM05D001112 ORTHO05D000996 6.9e-15 84.3 108 52.8
FvH4_1g21650 Fragaria vesca HOM05D001112 ORTHO05D000996 6.9e-15 84.3 114 46.5
FAN19G1772 Fragaria x ananassa HOM05D001112 ORTHO05D000996 6.9e-15 84.3 114 46.5
COL.COLO4_16482 Corchorus olitorius HOM05D001112 ORTHO05D000996 1.2e-14 83.6 100 48.0
FAN28G0661 Fragaria x ananassa HOM05D001112 ORTHO05D000996 1.2e-14 83.6 132 40.2
Medtr5g061690 Medicago truncatula HOM05D001112 ORTHO05D000996 1.2e-14 83.6 90 55.6
Aqoxy5G01959 Aquilegia oxysepala HOM05D001112 ORTHO05D000996 1.5e-14 83.2 107 47.7
Eucgr.I00379 Eucalyptus grandis HOM05D001112 ORTHO05D000996 2.0e-14 82.8 108 49.1
FAN26G3021 Fragaria x ananassa HOM05D001112 ORTHO05D000996 2.0e-14 82.8 114 45.6
Prupe.6G179100 Prunus persica HOM05D001112 ORTHO05D000996 2.0e-14 82.8 100 49.0
FAN23G2597 Fragaria x ananassa HOM05D001112 ORTHO05D000996 2.6e-14 82.4 114 45.6
Actinidia10296 Actinidia chinensis HOM05D001112 ORTHO05D000996 3.4e-14 82.0 105 42.9
DCAR_014248 Daucus carota HOM05D001112 ORTHO05D000996 7.7e-14 80.9 88 53.4
THA.LOC104818485 Tarenaya hassleriana HOM05D001112 ORTHO05D000996 1.0e-13 80.5 105 48.6
Ciclev10025730m.g Citrus clementina HOM05D001112 ORTHO05D000996 1.3e-13 80.1 100 50.0
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 1.3e-13 80.1 110 51.8
MD01G1024100 Malus domestica HOM05D001112 ORTHO05D000996 1.3e-13 80.1 108 45.4
Glyma.13G086200 Glycine max HOM05D001112 ORTHO05D000996 2.9e-13 79.0 89 51.7
Dinv13048 Davidia involucrata HOM05D001112 ORTHO05D000996 3.8e-13 78.6 105 45.7
Thecc.08G113200 Theobroma cacao HOM05D001112 ORTHO05D000996 3.8e-13 78.6 93 48.4
Aa31LG3G17060 Aethionema arabicum HOM05D001112 ORTHO05D000996 5.0e-13 78.2 105 47.6
TPR.G22885 Trifolium pratense HOM05D001112 ORTHO05D000996 6.5e-13 77.8 82 50.0
BcaB08g37139 Brassica carinata HOM05D001112 ORTHO05D000996 8.5e-13 77.4 105 46.7
CiPaw.04G095400 Carya illinoinensis HOM05D001112 ORTHO05D000996 8.5e-13 77.4 107 47.7
Glyma.14G168500 Glycine max HOM05D001112 ORTHO05D000996 8.5e-13 77.4 89 50.6
SalBow3G2799 Salvia bowleyana HOM05D001112 ORTHO05D000996 8.5e-13 77.4 85 54.1
Nitab4.5_0015258g0010 Nicotiana tabacum HOM05D001112 ORTHO05D000996 1.1e-12 77.0 110 47.3
Cpa.g.sc231.7 Carica papaya HOM05D001112 ORTHO05D000996 1.4e-12 76.6 101 50.5
Hund13645 Selenicereus undatus HOM05D001112 ORTHO05D000996 1.4e-12 76.6 102 50.0
AL6G20530 Arabidopsis lyrata HOM05D001112 ORTHO05D000996 1.9e-12 76.3 105 44.8
Glyma.18G019400 Glycine max HOM05D001112 ORTHO05D000996 1.9e-12 76.3 99 44.4
Phvul.001G250200 Phaseolus vulgaris HOM05D001112 ORTHO05D000996 1.9e-12 76.3 99 42.4
Glyma.11G237900 Glycine max HOM05D001112 ORTHO05D000996 2.5e-12 75.9 101 42.6
Psat2g075320 Pisum sativum HOM05D001112 ORTHO05D000996 2.5e-12 75.9 88 48.9
Actinidia16053 Actinidia chinensis HOM05D001112 ORTHO05D000996 3.2e-12 75.5 94 51.1
Lj6g0026363 Lotus japonicus HOM05D001112 ORTHO05D000996 3.2e-12 75.5 85 48.2
QL06p050489 Quercus lobata HOM05D001112 ORTHO05D000996 5.5e-12 74.7 90 51.1
RcHm_v2.0_Chr2g0129991 Rosa chinensis HOM05D001112 ORTHO05D036420 5.5e-12 74.7 85 51.8
VMungo0647G1772 Vigna mungo HOM05D001112 ORTHO05D000996 7.2e-12 74.3 88 50.0
EL10Ac6g15065 Beta vulgaris HOM05D001112 ORTHO05D000996 9.4e-12 73.9 105 39.0
Oeu028400.1 Olea europaea HOM05D001112 ORTHO05D000996 9.4e-12 73.9 87 49.4
Sabra02G0072600 Salix brachista HOM05D001112 ORTHO05D000996 9.4e-12 73.9 99 40.4
A10p27430 Brassica napus HOM05D001112 ORTHO05D000996 1.2e-11 73.6 105 47.6
BraA10t44794Z Brassica rapa HOM05D001112 ORTHO05D000996 1.2e-11 73.6 105 47.6
Potri.002G092100 Populus trichocarpa HOM05D001112 ORTHO05D000996 1.6e-11 73.2 85 42.4
BolC9t59509H Brassica oleracea HOM05D001112 ORTHO05D000996 2.1e-11 72.8 104 48.1
CANSAT01G3076 Cannabis sativa HOM05D001112 ORTHO05D000996 2.1e-11 72.8 107 43.0
Manes.02G156500 Manihot esculenta HOM05D001112 ORTHO05D000996 2.1e-11 72.8 98 44.9
BcaC04g19346 Brassica carinata HOM05D001112 ORTHO05D000996 2.7e-11 72.4 85 51.8
Duzib116G0524 Durio zibethinus HOM05D001112 ORTHO05D000996 2.7e-11 72.4 100 43.0
Migut.H02392 Erythranthe guttata HOM05D001112 ORTHO05D000996 2.7e-11 72.4 108 45.4
Phvul.008G170200 Phaseolus vulgaris HOM05D001112 ORTHO05D000996 2.7e-11 72.4 89 47.2
RcHm_v2.0_Chr1g0350111 Rosa chinensis HOM05D001112 ORTHO05D036420 2.7e-11 72.4 112 44.6
AT5G10080 Arabidopsis thaliana HOM05D001112 ORTHO05D000996 3.6e-11 72.0 105 43.8
C09p67490 Brassica napus HOM05D001112 ORTHO05D000996 3.6e-11 72.0 104 48.1
Sp6g33320 Schrenkiella parvula HOM05D001112 ORTHO05D000996 3.6e-11 72.0 105 43.8
Thhalv10013235m.g Eutrema salsugineum HOM05D001112 ORTHO05D000996 4.7e-11 71.6 105 42.9
Lalb_Chr17g0344091 Lupinus albus HOM05D001112 ORTHO05D000996 6.1e-11 71.2 88 48.9
Lsat_1_v5_gn_4_141761 Lactuca sativa HOM05D001112 ORTHO05D000996 7.9e-11 70.9 102 44.1
Lj1g0011741 Lotus japonicus HOM05D001112 ORTHO05D000996 7.9e-11 70.9 89 44.9
CiPaw.05G232400 Carya illinoinensis HOM05D001112 ORTHO05D000996 1.4e-10 70.1 105 40.0
HPP92_013092 Vanilla planifolia HOM05D001112 ORTHO05D000996 1.4e-10 70.1 98 43.9
Ah.03g142620 Amaranthus hybridus HOM05D001112 ORTHO05D000996 3.0e-10 68.9 107 41.1
ATR0564G321 Amborella trichopoda HOM05D001112 ORTHO05D000996 3.9e-10 68.6 111 42.3
Peaxi162Scf00204g00085 Petunia axillaris HOM05D001112 ORTHO05D000996 5.1e-10 68.2 81 48.1
AUR62002039 Chenopodium quinoa HOM05D001112 ORTHO05D000996 6.7e-10 67.8 105 39.0
Cc07_g15650 Coffea canephora HOM05D001112 ORTHO05D000996 6.7e-10 67.8 86 46.5
Sabra05G0065600 Salix brachista HOM05D001112 ORTHO05D000996 8.8e-10 67.4 74 54.1
AUR62003758 Chenopodium quinoa HOM05D001112 ORTHO05D000996 1.1e-09 67.0 110 39.1
TWI56G0957 Tripterygium wilfordii HOM05D001112 ORTHO05D000996 2.0e-09 66.2 82 47.6
Atru.chr13.1274 Acer truncatum HOM05D001112 ORTHO05D000996 2.6e-09 65.9 104 39.4
ClCG03G008930 Citrullus lanatus HOM05D001112 ORTHO05D000996 3.3e-09 65.5 99 41.4
Medtr3g087780 Medicago truncatula HOM05D001112 ORTHO05D000996 4.4e-09 65.1 107 38.3
QL12p035780 Quercus lobata HOM05D001112 ORTHO05D000996 1.3e-08 63.5 84 45.2
Psat5g088360 Pisum sativum HOM05D001112 ORTHO05D000996 1.7e-08 63.2 100 38.0
SalBow7G4010 Salvia bowleyana HOM05D001112 ORTHO05D000996 2.2e-08 62.8 99 42.4
CDE05G0653 Ceratophyllum demersum HOM05D001112 ORTHO05D000996 2.8e-08 62.4 85 44.7
Nitab4.5_0002534g0050 Nicotiana tabacum HOM05D001112 ORTHO05D000996 3.7e-08 62.0 89 41.6
CDE05G1359 Ceratophyllum demersum HOM05D001700 ORTHO05D002131 4.8e-08 61.6 49 63.3
Nitab4.5_0006730g0020 Nicotiana tabacum HOM05D001112 ORTHO05D000996 1.1e-07 60.5 89 41.6
MD15G1362800 Malus domestica HOM05D001112 ORTHO05D000996 1.8e-07 59.7 102 38.2
PGSC0003DMG400022113 Solanum tuberosum HOM05D001112 ORTHO05D000996 1.8e-07 59.7 99 38.4
Nitab4.5_0000214g0140 Nicotiana tabacum HOM05D001112 ORTHO05D000996 2.4e-07 59.3 110 40.9
arahy.Tifrunner.gnm1.ann1.IKE14K Arachis hypogaea HOM05D001112 ORTHO05D000996 5.3e-07 58.2 82 45.1
Solyc04g072690.3 Solanum lycopersicum HOM05D001112 ORTHO05D000996 5.3e-07 58.2 99 37.4
arahy.Tifrunner.gnm1.ann1.D20FU4 Arachis hypogaea HOM05D001112 ORTHO05D000996 7.0e-07 57.8 82 45.1
Cc00_g24420 Coffea canephora HOM05D001112 ORTHO05D000996 1.2e-06 57.0 83 42.2
Sopen04g028890 Solanum pennellii HOM05D001112 ORTHO05D000996 1.5e-06 56.6 99 36.4
Ciclev10000815m.g Citrus clementina HOM05D001112 ORTHO05D000996 2.0e-06 56.2 104 35.6
Lalb_Chr23g0277281 Lupinus albus HOM05D001112 ORTHO05D000996 2.0e-06 56.2 81 37.0
THA.LOC104806799 Tarenaya hassleriana HOM05D001112 ORTHO05D000996 3.4e-06 55.5 105 37.1
CsaV3_5G023750 Cucumis sativus L. HOM05D001112 ORTHO05D000996 4.5e-06 55.1 99 34.3


User provided reference genes

Program Settings