Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.6e-161 572.8 297 100.0
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 9.9e-108 394.0 196 99.5
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 2.5e-95 352.8 290 65.5
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 4.3e-95 352.1 300 61.3
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 8.1e-94 347.8 290 63.4
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 4.5e-92 342.0 292 64.4
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 8.4e-91 337.8 292 60.6
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 2.4e-90 336.3 287 62.0
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 1.2e-89 334.0 291 60.8
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 3.3e-87 325.9 299 58.9
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 9.6e-87 324.3 285 58.9
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 1.8e-85 320.1 291 56.7
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 2.6e-84 316.2 300 59.7
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 5.8e-84 315.1 286 59.1
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 9.9e-84 314.3 290 57.6
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 9.9e-84 314.3 299 56.9
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 3.8e-83 312.4 290 59.7
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 8.4e-83 311.2 290 57.6
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 2.5e-82 309.7 290 60.0
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 7.1e-82 308.1 290 59.3
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 3.0e-80 302.8 288 56.9
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 3.9e-80 302.4 288 59.4
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.8e-78 296.2 292 54.8
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 3.8e-75 285.8 286 53.8
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 3.2e-74 282.7 286 53.5
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 4.2e-74 282.3 288 56.2
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.2e-73 280.8 286 54.2
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 2.7e-73 279.6 285 55.1
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 1.3e-72 277.3 289 54.3
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 1.8e-72 276.9 292 55.5
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 1.8e-72 276.9 287 54.0
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 2.3e-72 276.6 290 53.8
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 8.7e-72 274.6 291 51.9
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 8.7e-72 274.6 295 55.6
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 3.3e-71 272.7 287 53.7
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 5.7e-71 271.9 288 53.8
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 7.4e-71 271.6 290 53.4
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 1.6e-70 270.4 291 50.9
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 8.2e-70 268.1 291 51.2
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 2.4e-69 266.5 285 49.5
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 5.3e-69 265.4 290 51.4
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 2.0e-68 263.5 272 52.9
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 2.6e-68 263.1 305 50.8
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 5.9e-68 261.9 287 49.8
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 1.7e-67 260.4 292 54.1
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.7e-67 260.4 292 54.1
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.7e-67 260.4 292 54.5
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 6.5e-67 258.5 292 53.8
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 1.4e-66 257.3 292 51.4
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 2.5e-66 256.5 285 49.1
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.2e-66 256.1 292 53.1
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 4.2e-66 255.8 290 49.7
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 5.5e-66 255.4 254 52.0
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 5.5e-66 255.4 288 50.0
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 5.5e-66 255.4 285 49.5
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 3.6e-65 252.7 290 49.0
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 3.6e-65 252.7 293 46.8
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.6e-65 252.3 313 50.2
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 7.9e-65 251.5 290 49.0
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 7.9e-65 251.5 296 50.0
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 2.3e-64 250.0 328 48.2
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 3.9e-64 249.2 297 47.8
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 8.8e-64 248.1 293 46.8
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 8.8e-64 248.1 289 50.9
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 2.5e-63 246.5 288 48.3
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 5.7e-63 245.4 288 47.9
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 2.8e-62 243.0 331 45.9
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 3.7e-62 242.7 274 51.8
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 4.5e-60 235.7 292 45.9
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 5.9e-60 235.3 294 46.3
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 1.2e-57 227.6 287 45.6
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 6.1e-57 225.3 205 61.0
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 6.1e-57 225.3 293 47.4
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 6.1e-57 225.3 288 45.8
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 1.0e-56 224.6 206 58.3
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 3.0e-56 223.0 267 47.2
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 3.9e-56 222.6 286 45.8
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 2.6e-55 219.9 274 44.9
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 5.7e-55 218.8 286 45.1
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 2.0e-52 210.3 286 44.1
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 5.9e-52 208.8 286 43.7
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 5.0e-51 205.7 200 58.0
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 3.2e-50 203.0 285 43.2
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 2.6e-47 193.4 291 40.5
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 9.7e-47 191.4 210 51.0
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 9.7e-47 191.4 286 42.3
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 3.1e-45 186.4 193 54.4
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.0e-43 181.4 287 39.4
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 5.2e-40 169.1 171 52.6
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 1.2e-39 167.9 196 50.5
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 3.7e-38 162.9 230 44.3
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 6.3e-38 162.2 229 41.5
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 4.1e-37 159.5 210 44.8
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 2.7e-36 156.8 215 45.6
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 7.7e-36 155.2 267 39.0
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.0e-35 154.8 306 35.6
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 8.5e-35 151.8 252 38.5
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 1.9e-34 150.6 229 41.5
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 9.4e-34 148.3 303 36.0
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 6.8e-32 142.1 249 38.2
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 3.7e-30 136.3 238 39.1
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 1.4e-29 134.4 137 52.6
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 5.0e-27 125.9 157 46.5
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 6.6e-27 125.6 202 37.1
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.9e-26 124.0 291 32.3
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 2.5e-26 123.6 210 38.1
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 4.2e-26 122.9 94 69.1
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 5.5e-26 122.5 136 48.5
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 9.5e-26 121.7 111 63.1
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 2.1e-25 120.6 263 33.1
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 6.1e-25 119.0 79 81.0
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 1.0e-24 118.2 203 37.9
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.3e-24 117.1 108 61.1
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 4.0e-24 116.3 340 27.1
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 1.5e-23 114.4 110 56.4
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 4.4e-23 112.8 127 55.1
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 2.5e-18 97.1 80 65.0
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 2.5e-18 97.1 80 65.0
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 9.5e-18 95.1 284 29.2
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 5.2e-16 89.4 57 73.7
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 8.9e-16 88.6 56 76.8
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 1.5e-15 87.8 57 71.9
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 4.4e-15 86.3 57 73.7
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 6.4e-14 82.4 101 48.5
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 3.5e-12 76.6 54 63.0
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 4.3e-10 69.7 136 31.6
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 9.8e-07 58.5 153 30.1


User provided reference genes

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