Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0142F.1_g064360 Hydrangea macrophylla HOM05D003293 ORTHO05D022137 2.1e-39 165.2 84 100.0
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 6.0e-18 94.0 99 58.6
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 6.0e-18 94.0 99 58.6
Actinidia26213 Actinidia chinensis HOM05D003293 ORTHO05D005060 1.3e-17 92.8 99 57.6
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 1.7e-17 92.4 99 56.6
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 1.7e-17 92.4 99 56.6
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 2.3e-17 92.0 99 56.6
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 5.1e-17 90.9 99 56.6
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 5.1e-17 90.9 99 56.6
RcHm_v2.0_Chr5g0023561 Rosa chinensis HOM05D003293 ORTHO05D005060 5.1e-17 90.9 99 56.6
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 6.6e-17 90.5 99 56.6
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 6.6e-17 90.5 99 56.6
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 6.6e-17 90.5 99 55.6
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 6.6e-17 90.5 99 55.6
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 6.6e-17 90.5 99 55.6
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 6.6e-17 90.5 99 55.6
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 8.6e-17 90.1 99 55.6
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 8.6e-17 90.1 99 55.6
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 1.1e-16 89.7 99 55.6
CSS0007137 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D022137 1.5e-16 89.4 99 55.6
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 1.5e-16 89.4 99 55.6
SGA_v2.0_scaffold239G44013 Striga asiatica HOM05D003293 ORTHO05D005060 1.5e-16 89.4 99 55.6
Thecc.09G018800 Theobroma cacao HOM05D003293 ORTHO05D005060 1.5e-16 89.4 99 55.6
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 1.9e-16 89.0 99 54.5
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 1.9e-16 89.0 99 55.6
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 2.5e-16 88.6 99 55.6
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 2.5e-16 88.6 99 54.5
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 2.5e-16 88.6 99 54.5
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 2.5e-16 88.6 99 55.6
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 2.5e-16 88.6 99 54.5
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 3.3e-16 88.2 99 54.5
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 3.3e-16 88.2 99 54.5
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 3.3e-16 88.2 99 54.5
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 3.3e-16 88.2 99 54.5
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 4.3e-16 87.8 99 55.6
Oeu019711.2 Olea europaea HOM05D003293 ORTHO05D005060 4.3e-16 87.8 99 54.5
CAN.G641.45 Capsicum annuum HOM05D003293 ORTHO05D005060 5.6e-16 87.4 99 54.5
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 5.6e-16 87.4 99 54.5
HanXRQChr14g0433351 Helianthus annuus HOM05D003293 ORTHO05D005060 5.6e-16 87.4 99 52.5
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 5.6e-16 87.4 99 54.5
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 5.6e-16 87.4 99 54.5
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 5.6e-16 87.4 99 54.5
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 5.6e-16 87.4 99 54.5
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 5.6e-16 87.4 99 54.5
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 7.3e-16 87.0 99 52.5
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 7.3e-16 87.0 99 53.5
Cc04_g12410 Coffea canephora HOM05D003293 ORTHO05D005060 7.3e-16 87.0 99 54.5
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 7.3e-16 87.0 98 55.1
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 9.5e-16 86.7 99 53.5
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 9.5e-16 86.7 99 53.5
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 9.5e-16 86.7 98 54.1
Oeu033076.1 Olea europaea HOM05D003293 ORTHO05D005060 9.5e-16 86.7 99 53.5
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 9.5e-16 86.7 99 54.5
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 9.5e-16 86.7 99 54.5
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 9.5e-16 86.7 99 54.5
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 9.5e-16 86.7 99 53.5
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 9.5e-16 86.7 99 54.5
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 1.2e-15 86.3 99 53.5
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 1.2e-15 86.3 99 53.5
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 1.2e-15 86.3 99 53.5
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 1.2e-15 86.3 99 53.5
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 1.2e-15 86.3 99 53.5
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 1.2e-15 86.3 99 52.5
Gorai.013G241200 Gossypium raimondii HOM05D003293 ORTHO05D005060 1.2e-15 86.3 99 53.5
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 1.2e-15 86.3 99 52.5
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 1.6e-15 85.9 99 51.5
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 1.6e-15 85.9 99 51.5
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 1.6e-15 85.9 98 54.1
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 1.6e-15 85.9 99 52.5
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 2.1e-15 85.5 99 53.5
Nitab4.5_0000515g0130 Nicotiana tabacum HOM05D003293 ORTHO05D005060 2.1e-15 85.5 99 53.5
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 2.1e-15 85.5 99 53.5
Gohir.A13G206500 Gossypium hirsutum HOM05D003293 ORTHO05D005060 2.8e-15 85.1 99 52.5
VMungo1080G1291 Vigna mungo HOM05D003293 ORTHO05D005060 2.8e-15 85.1 99 53.5
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 3.6e-15 84.7 99 51.5
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 3.6e-15 84.7 99 51.5
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 3.6e-15 84.7 99 52.5
GSVIVG01036725001 Vitis vinifera HOM05D003293 ORTHO05D005060 3.6e-15 84.7 98 55.1
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 4.7e-15 84.3 99 53.5
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 4.7e-15 84.3 99 52.5
Gohir.D13G211100 Gossypium hirsutum HOM05D003293 ORTHO05D005060 4.7e-15 84.3 99 51.5
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 4.7e-15 84.3 99 52.5
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 6.2e-15 84.0 99 52.5
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 6.2e-15 84.0 99 52.5
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 6.2e-15 84.0 99 52.5
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 6.2e-15 84.0 99 52.5
Nitab4.5_0005442g0040 Nicotiana tabacum HOM05D003293 ORTHO05D005060 6.2e-15 84.0 99 53.5
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 6.2e-15 84.0 99 50.5
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 8.1e-15 83.6 99 51.5
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 8.1e-15 83.6 99 52.5
Hma1.2p1_0142F.1_g064350 Hydrangea macrophylla HOM05D003293 ORTHO05D022137 1.1e-14 83.2 94 55.3
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 1.1e-14 83.2 99 51.5
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 1.4e-14 82.8 99 51.5
AT1G79470 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 1.4e-14 82.8 99 51.5
AL2G40080 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 1.8e-14 82.4 99 51.5
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 1.8e-14 82.4 99 51.5
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 1.8e-14 82.4 99 52.5
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 1.8e-14 82.4 99 51.5
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 2.4e-14 82.0 99 51.5
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 2.4e-14 82.0 99 51.5
Carub.0002s2633 Capsella rubella HOM05D003293 ORTHO05D005060 3.1e-14 81.6 99 50.5
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 3.1e-14 81.6 99 51.5
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 3.1e-14 81.6 99 51.5
Rhsim10G0161300 Rhododendron simsii HOM05D003293 ORTHO05D005060 3.1e-14 81.6 99 52.5
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 4.0e-14 81.3 99 50.5
Gorai.013G251500 Gossypium raimondii HOM05D003293 ORTHO05D005060 4.0e-14 81.3 99 50.5
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 4.0e-14 81.3 99 50.5
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 5.2e-14 80.9 99 50.5
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 5.2e-14 80.9 99 50.5
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 5.2e-14 80.9 99 50.5
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 5.2e-14 80.9 99 50.5
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 5.2e-14 80.9 99 50.5
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 5.2e-14 80.9 99 50.5
Nitab4.5_0003468g0030 Nicotiana tabacum HOM05D003293 ORTHO05D005060 5.2e-14 80.9 95 53.7
CARHR073130 Cardamine hirsuta HOM05D003293 ORTHO05D005060 6.8e-14 80.5 99 50.5
AUR62005030 Chenopodium quinoa HOM05D003293 ORTHO05D005060 6.8e-14 80.5 99 50.5
AUR62011946 Chenopodium quinoa HOM05D003293 ORTHO05D005060 6.8e-14 80.5 99 50.5
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 6.8e-14 80.5 99 50.5
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 6.8e-14 80.5 99 48.5
Sp5g34520 Schrenkiella parvula HOM05D003293 ORTHO05D005060 6.8e-14 80.5 99 49.5
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 6.8e-14 80.5 99 50.5
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 6.8e-14 80.5 99 49.5
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 8.9e-14 80.1 99 50.5
Gohir.D13G220550 Gossypium hirsutum HOM05D003293 ORTHO05D022137 8.9e-14 80.1 99 50.5
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 8.9e-14 80.1 99 51.5
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 8.9e-14 80.1 99 51.5
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 1.2e-13 79.7 99 49.5
EL10Ac2g03658 Beta vulgaris HOM05D003293 ORTHO05D005060 1.5e-13 79.3 99 49.5
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 1.5e-13 79.3 99 49.5
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 1.5e-13 79.3 99 49.5
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 1.5e-13 79.3 99 51.5
HPP92_020646 Vanilla planifolia HOM05D003293 ORTHO05D005060 1.5e-13 79.3 99 48.5
Rhsim01G0231900 Rhododendron simsii HOM05D003293 ORTHO05D022137 3.4e-13 78.2 81 56.8
SMO361G0668 Selaginella moellendorffii HOM05D003293 ORTHO05D005060 2.2e-12 75.5 99 47.5
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 2.9e-12 75.1 99 47.5
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 3.8e-12 74.7 99 45.5
Pp3c14_26610 Physcomitrium patens HOM05D003293 ORTHO05D005060 1.1e-11 73.2 99 45.5
Pp3c1_34070 Physcomitrium patens HOM05D003293 ORTHO05D005060 1.1e-11 73.2 99 45.5
Pp3c1_34170 Physcomitrium patens HOM05D003293 ORTHO05D005060 1.1e-11 73.2 99 45.5
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 7.1e-11 70.5 108 46.3
SEGI_05687 Sequoiadendron giganteum HOM05D003293 ORTHO05D005060 9.2e-11 70.1 99 45.5
AagrBONN_evm.TU.Sc2ySwM_362.951 Anthoceros agrestis HOM05D003293 ORTHO05D005060 4.6e-10 67.8 99 44.4
Mapoly0102s0045 Marchantia polymorpha HOM05D003293 ORTHO05D005060 4.6e-10 67.8 99 41.4
Zm00001eb059650 Zea mays HOM05D003293 ORTHO05D005060 1.0e-09 66.6 74 52.7
arahy.Tifrunner.gnm1.ann1.59CN8W Arachis hypogaea HOM05D003293 ORTHO05D005060 1.1e-08 63.2 99 44.4
ECA232G2754 Erigeron canadensis HOM05D003293 ORTHO05D005060 2.5e-08 62.0 83 49.4
CBR_g30467 Chara braunii HOM05D003293 ORTHO05D005060 7.3e-08 60.5 99 42.4
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 1.6e-07 59.3 33 90.9
Eucgr.L02511 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.6e-07 59.3 33 90.9
Os03g0780500 Oryza sativa ssp. japonica HOM05D003293 ORTHO05D005060 3.6e-07 58.2 33 87.9
PRCOL_00001751 Prasinoderma coloniale HOM05D003293 ORTHO05D005060 3.6e-07 58.2 99 38.4
Cpa.g.c45345 Carica papaya HOM05D003293 ORTHO05D005060 1.4e-06 56.2 33 87.9
Cre14.g614300 Chlamydomonas reinhardtii HOM05D003293 ORTHO05D005060 2.4e-06 55.5 97 37.1
Zm00001eb213620 Zea mays HOM05D003293 ORTHO05D005060 5.2e-06 54.3 33 81.8


User provided reference genes

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