Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 5.4e-229 797.3 415 100.0
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.4e-216 756.1 416 96.2
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 6.1e-148 528.1 339 82.9
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 4.6e-135 485.3 429 63.4
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 1.3e-105 387.5 445 50.8
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 2.2e-105 386.7 400 56.8
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 2.0e-98 363.6 433 52.4
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 2.4e-96 356.7 433 52.0
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 3.2e-96 356.3 422 50.9
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 1.2e-95 354.4 445 51.2
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 3.6e-92 342.8 432 50.2
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 1.4e-91 340.9 436 50.7
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 2.4e-91 340.1 389 51.2
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 8.4e-89 331.6 427 49.9
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 3.5e-87 326.2 431 48.3
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 1.3e-84 317.8 427 47.3
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 1.8e-83 313.9 378 49.5
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 5.8e-82 308.9 403 48.9
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 1.0e-81 308.1 429 46.9
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 2.5e-80 303.5 372 49.5
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 7.9e-79 298.5 400 47.0
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 6.7e-78 295.4 364 51.1
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 1.9e-77 293.9 364 50.8
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 3.3e-77 293.1 393 48.1
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 5.7e-77 292.4 368 49.2
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 9.6e-77 291.6 390 47.2
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 1.6e-76 290.8 391 47.6
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 5.3e-75 285.8 366 49.7
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 1.2e-74 284.6 392 46.4
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.2e-74 284.6 372 47.3
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.2e-74 284.6 372 47.3
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 1.2e-74 284.6 414 44.9
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 2.6e-74 283.5 373 48.0
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 3.4e-74 283.1 393 47.3
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 7.6e-74 282.0 395 46.6
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 1.1e-72 278.1 403 45.2
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 4.2e-72 276.2 403 44.7
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 5.5e-72 275.8 458 41.5
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 7.2e-72 275.4 376 47.6
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 9.3e-72 275.0 373 45.6
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 9.3e-72 275.0 395 46.6
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 2.1e-71 273.9 372 47.6
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 2.1e-71 273.9 365 47.1
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 3.6e-71 273.1 422 44.5
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 3.6e-71 273.1 392 44.6
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 7.9e-71 271.9 366 46.4
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 5.1e-70 269.2 432 44.4
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.3e-69 266.5 373 46.9
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 7.4e-69 265.4 482 40.2
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 2.8e-68 263.5 427 44.7
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 4.8e-68 262.7 482 40.0
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 4.8e-68 262.7 373 46.6
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 8.2e-68 261.9 372 47.0
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 4.1e-67 259.6 290 53.8
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 5.3e-67 259.2 433 44.3
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 9.1e-67 258.5 312 49.7
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 5.9e-66 255.8 377 45.1
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 1.0e-65 255.0 395 45.8
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 1.3e-65 254.6 388 42.8
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 2.9e-65 253.4 393 44.8
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 1.1e-64 251.5 379 46.2
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 5.5e-64 249.2 430 42.1
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 2.1e-63 247.3 404 40.1
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 3.6e-63 246.5 432 41.4
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 3.6e-63 246.5 404 41.8
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 1.8e-62 244.2 363 44.4
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 3.0e-62 243.4 378 44.2
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 5.1e-62 242.7 251 57.4
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 5.1e-62 242.7 247 56.7
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 6.7e-62 242.3 375 42.7
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 4.8e-60 236.1 428 40.4
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 4.8e-60 236.1 330 44.5
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 9.1e-59 231.9 394 40.9
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 2.0e-58 230.7 376 44.1
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 1.0e-57 228.4 412 41.7
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 3.8e-57 226.5 398 39.4
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 6.5e-57 225.7 401 41.6
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 1.9e-56 224.2 398 39.4
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 7.2e-56 222.2 387 39.8
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.2e-55 221.5 436 38.1
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 3.6e-55 219.9 418 39.2
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 3.0e-54 216.9 380 39.7
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 3.9e-54 216.5 389 39.1
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 3.3e-53 213.4 383 40.2
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 7.4e-53 212.2 392 38.8
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 2.2e-52 210.7 384 39.6
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 1.8e-51 207.6 394 37.8
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 2.4e-51 207.2 451 38.1
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 4.1e-51 206.5 379 40.1
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 9.1e-51 205.3 380 38.4
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 9.1e-51 205.3 430 37.0
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 4.5e-50 203.0 396 39.4
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 1.3e-49 201.4 426 36.4
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 1.2e-45 188.3 435 37.0
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 9.1e-43 178.7 385 37.1
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 9.1e-43 178.7 371 36.9
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 9.1e-43 178.7 371 36.9
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 1.6e-42 177.9 384 37.0
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 2.0e-42 177.6 408 36.3
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 1.7e-41 174.5 381 36.2
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 2.2e-41 174.1 406 35.5
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 1.1e-40 171.8 406 35.2
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 3.2e-40 170.2 421 33.0
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 7.2e-40 169.1 395 34.7
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 1.0e-38 165.2 358 36.3
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 5.4e-35 152.9 323 35.6
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 1.6e-34 151.4 383 32.4
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 1.5e-32 144.8 364 33.8
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 2.1e-31 141.0 356 30.9
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 1.2e-29 135.2 407 30.5
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 3.4e-29 133.7 319 32.6
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 6.3e-28 129.4 216 41.2
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 4.7e-23 113.2 163 45.4
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 1.2e-21 108.6 267 36.0
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 4.4e-21 106.7 153 42.5
Actinidia30732 Actinidia chinensis HOM05D005720 ORTHO05D006984 4.4e-13 80.1 172 37.8
MBI16_g03132_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 7.8e-10 69.3 185 31.9
MSTRG.8687 Avicennia marina HOM05D005720 ORTHO05D006984 6.6e-09 66.2 135 39.3
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 8.6e-09 65.9 290 24.8
Actinidia34180 Actinidia chinensis HOM05D005720 ORTHO05D006984 2.5e-08 64.3 97 43.3
BcaB08g35657 Brassica carinata HOM05D005720 ORTHO05D006984 2.8e-07 60.8 84 42.9


User provided reference genes

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