Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 0.0e+00 1903.3 974 100.0
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 0.0e+00 1297.7 911 77.9
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 0.0e+00 1199.9 1007 65.6
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.3e-268 930.2 470 100.0
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 1.0e-254 884.0 1030 52.2
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 5.0e-249 865.1 1018 52.0
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 1.9e-248 863.2 1013 51.6
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 4.6e-247 858.6 1014 51.0
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 5.9e-242 841.6 984 50.1
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 3.9e-238 828.9 1019 50.3
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 7.7e-234 814.7 890 53.5
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 7.2e-224 781.6 1013 48.6
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 6.1e-223 778.5 1011 47.2
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 8.0e-223 778.1 995 48.1
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 2.6e-221 773.1 1017 47.4
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 7.0e-219 765.0 1007 47.8
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 7.7e-218 761.5 1017 48.8
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 3.2e-216 756.1 416 96.2
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 5.5e-208 728.8 995 46.5
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 1.6e-207 727.2 1024 45.7
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 2.1e-207 726.9 1022 45.3
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 4.7e-207 725.7 1017 46.0
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 6.1e-207 725.3 1023 45.7
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 3.7e-204 716.1 1027 46.3
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 9.2e-203 711.4 987 46.3
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 2.7e-202 709.9 987 46.5
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 3.5e-202 709.5 997 44.8
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 1.0e-198 698.0 987 45.6
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 2.3e-198 696.8 1003 44.6
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 2.3e-198 696.8 986 46.2
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 3.1e-198 696.4 988 45.1
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 6.8e-198 695.3 998 44.9
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.5e-197 694.1 986 46.0
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 2.9e-196 689.9 1016 44.8
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 8.3e-196 688.3 1023 44.5
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.0e-194 683.7 1020 44.5
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 1.7e-193 680.6 1073 43.6
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.5e-192 677.6 1020 44.4
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 5.6e-192 675.6 1023 44.8
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 5.6e-192 675.6 990 44.9
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 8.0e-191 671.8 1003 43.7
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 3.4e-189 666.4 1007 44.1
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 9.8e-189 664.8 1016 44.3
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 2.2e-188 663.7 1019 44.3
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 2.2e-188 663.7 1002 44.0
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 1.9e-184 650.6 1011 43.9
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 2.8e-183 646.7 1001 43.7
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 1.4e-182 644.4 1004 43.7
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 8.9e-182 641.7 1021 43.0
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.5e-181 641.0 758 52.1
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 1.7e-180 637.5 1056 40.8
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.7e-180 637.5 791 48.7
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 4.9e-180 636.0 1023 42.5
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 4.6e-178 629.4 1056 40.9
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 9.6e-176 621.7 1002 43.2
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 1.6e-175 620.9 863 45.0
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 3.1e-174 616.7 1019 42.1
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 8.9e-174 615.1 1019 41.6
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 1.2e-173 614.8 894 45.4
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 9.9e-173 611.7 1029 41.8
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 1.9e-171 607.4 1016 41.6
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 1.9e-171 607.4 1010 41.8
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 5.8e-165 585.9 980 40.6
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 7.6e-165 585.5 1019 39.3
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 1.7e-164 584.3 1012 38.9
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 2.9e-164 583.6 1024 39.1
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 6.6e-161 572.4 1004 40.0
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 6.6e-161 572.4 1014 40.2
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 3.6e-159 566.6 1005 40.3
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 4.8e-159 566.2 1015 40.4
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 1.2e-157 561.6 983 40.0
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 3.8e-156 556.6 1016 40.3
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 6.4e-156 555.8 1005 40.0
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 3.2e-155 553.5 944 40.7
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 9.3e-155 552.0 825 44.2
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 1.8e-153 547.7 1006 39.4
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 1.1e-152 545.0 1031 39.7
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 5.6e-152 542.7 1015 38.6
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 5.8e-149 532.7 1024 39.0
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 8.4e-148 528.9 1021 38.0
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 3.2e-147 526.9 1018 38.0
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 3.5e-146 523.5 1015 38.2
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 1.1e-144 518.5 1027 38.4
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 4.3e-144 516.5 623 50.2
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 6.9e-142 509.2 1026 38.7
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 1.6e-138 498.0 1031 36.9
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 2.7e-138 497.3 1019 36.8
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 3.0e-137 493.8 1019 37.5
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 5.1e-137 493.0 1022 36.9
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 2.5e-136 490.7 1022 36.9
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 2.5e-136 490.7 1021 36.4
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 2.5e-136 490.7 1025 37.0
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 7.4e-136 489.2 1019 37.0
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 7.4e-136 489.2 1019 37.0
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 4.8e-135 486.5 1023 36.2
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 8.2e-135 485.7 586 50.0
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 5.0e-132 476.5 998 36.6
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 2.7e-122 444.1 910 35.9
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 3.7e-119 433.7 900 37.9
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 5.9e-117 426.4 991 35.2
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 8.5e-116 422.5 972 34.9
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 6.1e-106 389.8 989 34.0
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 1.8e-105 388.3 855 35.3
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 3.1e-102 377.5 1024 33.4
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 1.3e-100 372.1 657 40.3
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 3.2e-99 367.5 355 60.3
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 4.3e-91 340.5 1009 31.1
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 5.0e-76 290.4 614 35.0
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 1.6e-74 285.4 953 29.9
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 1.3e-71 275.8 1054 28.6
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 2.8e-66 258.1 313 49.5
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 3.6e-66 257.7 975 27.7
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 9.9e-64 249.6 1100 27.0
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 2.9e-63 248.1 451 37.3
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 7.1e-62 243.4 375 42.4
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.2e-61 242.7 247 56.7
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 1.6e-61 242.3 251 57.4
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 4.2e-54 217.6 322 44.7
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.3e-39 169.5 491 32.2
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 1.0e-31 143.3 365 33.2
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 1.4e-25 122.9 1010 22.7
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 1.0e-20 106.7 153 42.5
Lsat_1_v5_gn_5_90621 Lactuca sativa HOM05D005720 ORTHO05D006984 3.7e-18 98.2 187 40.6
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 2.7e-13 82.0 92 60.9
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 6.1e-13 80.9 89 60.7
Actinidia30732 Actinidia chinensis HOM05D005720 ORTHO05D006984 1.0e-12 80.1 172 37.8
MBI16_g03132_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 4.1e-09 68.2 186 32.3
Lj2P929T12 Lonicera japonica HOM05D005720 ORTHO05D006984 9.1e-09 67.0 113 48.7
MSTRG.8687 Avicennia marina HOM05D005720 ORTHO05D006984 1.5e-08 66.2 135 39.3
Actinidia34180 Actinidia chinensis HOM05D005720 ORTHO05D006984 5.9e-08 64.3 97 43.3
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 2.9e-07 62.0 470 21.7
BcaB08g35657 Brassica carinata HOM05D005720 ORTHO05D006984 6.5e-07 60.8 84 42.9


User provided reference genes

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