Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 3172.9 1631 100.0
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2847.4 1635 89.4
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 2696.8 1635 84.4
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2653.2 1635 83.4
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 2607.4 1638 81.8
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 2571.6 1686 78.4
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2505.3 1637 78.7
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 2504.2 1636 78.2
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2503.0 1638 78.7
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 2497.2 1634 78.2
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 2496.5 1633 78.4
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 2494.9 1633 78.4
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 2491.8 1635 77.7
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2483.0 1635 78.2
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 2482.2 1636 78.1
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 2480.7 1634 77.9
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 2475.3 1636 77.8
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2471.8 1630 77.8
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 2459.1 1632 77.5
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2456.0 1630 77.4
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 2438.7 1634 76.4
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 2438.3 1634 76.7
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 2428.7 1966 67.8
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2427.9 1635 78.9
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 2425.2 1634 76.3
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 2385.1 1633 75.4
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 2381.7 1636 74.3
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 2379.4 1636 74.4
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 2373.2 1633 74.4
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 2370.5 1639 74.8
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 2369.7 1634 75.0
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 2367.0 1632 74.1
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 2364.7 1635 73.7
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 2356.6 1634 74.2
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2356.3 1691 73.6
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 2353.9 1636 74.1
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 2353.2 1630 73.6
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2348.2 1635 73.8
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 2337.0 1450 81.8
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 2336.2 1641 74.2
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 2332.4 1624 73.8
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2319.3 1633 73.4
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 2315.8 1634 73.0
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 2301.6 1634 72.9
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2288.8 1676 71.5
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 2285.4 1633 72.3
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 2284.2 1633 72.4
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2272.7 1835 67.5
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2270.4 1666 70.0
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 2259.2 1634 72.5
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 2238.4 1686 69.2
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 2234.9 1635 70.5
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2211.8 1633 70.1
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2207.6 1626 70.5
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2207.6 1626 70.5
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 2204.1 1632 69.9
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 2204.1 1630 69.8
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 2201.8 1629 70.0
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 2201.4 1632 69.9
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 2201.0 1801 66.0
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 2189.8 1632 69.5
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2188.7 1632 69.4
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 2187.1 1633 69.4
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 2186.0 1632 69.2
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2185.6 1632 69.4
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 2182.1 1632 69.2
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 2180.6 1632 69.3
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 2164.4 1128 99.4
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2140.9 1626 68.1
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 2077.4 1471 72.5
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 2071.2 1644 67.3
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 2044.2 1624 66.0
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2040.8 1695 65.1
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 1907.9 2599 46.4
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1849.7 1631 60.6
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1843.9 1647 60.4
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1741.9 1247 73.8
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1635.2 1177 71.4
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1570.1 1632 54.2
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1555.0 1267 64.5
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1545.8 1112 71.1
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 0.0e+00 1529.6 1641 50.9
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 0.0e+00 1483.8 1649 50.0
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1411.4 1267 59.2
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 0.0e+00 1315.4 1619 45.5
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 0.0e+00 1297.0 913 73.3
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 0.0e+00 1268.1 1633 45.3
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 0.0e+00 1245.3 1745 42.1
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 1244.2 834 76.0
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 0.0e+00 1169.8 1030 60.5
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1147.5 1150 54.6
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 0.0e+00 1115.5 846 68.8
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 1.0e-307 1060.8 830 65.9
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 1.4e-275 954.1 955 56.1
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 5.2e-243 845.9 673 66.4
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 8.4e-225 785.4 725 58.8
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 6.0e-215 752.7 441 88.0
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 1.5e-213 748.0 578 67.6
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 4.2e-208 729.9 520 71.5
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 4.5e-194 683.3 469 76.1
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 3.7e-180 637.1 430 77.7
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 1.2e-178 632.1 500 63.6
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 1.8e-174 618.2 386 81.3
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 2.3e-166 591.3 476 64.3
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 5.2e-166 590.1 373 80.2
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 2.2e-164 584.7 434 67.1
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 2.7e-151 541.2 361 77.0
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 4.2e-144 517.3 412 63.8
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 9.2e-131 473.0 399 62.4
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 1.7e-121 442.2 362 69.6
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 5.6e-120 437.2 810 37.2
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 7.3e-120 436.8 288 76.4
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 9.2e-115 419.9 264 81.8
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.7e-97 362.5 293 63.1
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 2.4e-91 342.0 286 67.1
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 7.9e-90 337.0 1501 26.2
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 7.9e-82 310.5 1824 23.1
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 1.9e-80 305.8 605 36.9
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 3.3e-80 305.1 315 56.5
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 1.2e-74 286.6 422 45.7
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 2.9e-68 265.4 355 42.5
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 3.8e-68 265.0 160 84.4
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.2e-63 249.2 152 80.9
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.5e-61 241.5 169 76.3
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 1.0e-60 240.4 157 79.0
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 1.7e-55 223.0 187 69.0
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 2.2e-55 222.6 180 71.7
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 2.2e-55 222.6 180 71.7
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 2.2e-55 222.6 180 71.7
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 7.0e-54 217.6 125 88.8
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.9e-52 212.2 119 89.9
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 1.1e-43 183.7 129 79.1
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 3.8e-36 158.7 148 60.1
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 7.7e-29 134.4 116 67.2
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 1.5e-27 130.2 537 24.2
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.0e-25 124.0 69 92.8
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 7.5e-24 117.9 96 64.6
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 2.9e-23 115.9 480 25.8
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 5.0e-20 105.1 50 92.0
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.9e-19 103.2 55 87.3
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.2e-18 100.5 100 62.0
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 1.2e-18 100.5 75 69.3
Actinidia17345 Actinidia chinensis HOM05D003845 ORTHO05D004161 3.6e-18 99.0 54 87.0
Actinidia17348 Actinidia chinensis HOM05D003226 ORTHO05D015784 3.6e-18 99.0 54 87.0
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 1.4e-17 97.1 77 66.2
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 6.8e-17 94.7 75 68.0
COL.COLO4_16180 Corchorus olitorius HOM05D003845 ORTHO05D004161 2.0e-16 93.2 53 84.9
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 3.4e-16 92.4 70 72.9
arahy.Tifrunner.gnm1.ann1.57NG5G Arachis hypogaea HOM05D003845 ORTHO05D004161 3.4e-16 92.4 52 84.6
arahy.Tifrunner.gnm1.ann1.395ZIT Arachis hypogaea HOM05D003845 ORTHO05D004161 4.4e-16 92.0 56 76.8
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 1.3e-15 90.5 54 74.1
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 1.3e-15 90.5 70 67.1
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 1.7e-15 90.1 57 84.2
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 8.3e-15 87.8 62 69.4
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 2.4e-14 86.3 54 83.3
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.3e-12 79.7 42 92.9
Lsat_1_v5_gn_1_87981 Lactuca sativa HOM05D003845 ORTHO05D004161 2.5e-11 76.3 47 72.3
Pp3c9_4980 Physcomitrium patens HOM05D003845 ORTHO05D004161 7.3e-11 74.7 115 37.4
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 7.3e-11 74.7 51 76.5
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 3.6e-10 72.4 66 69.7
Hund29189 Selenicereus undatus HOM05D008000 ORTHO05D000006 4.7e-10 72.0 72 54.2
Hund29191 Selenicereus undatus HOM05D008000 ORTHO05D000006 4.7e-10 72.0 72 54.2
Mapoly0010s0133 Marchantia polymorpha HOM05D003845 ORTHO05D004161 6.2e-10 71.6 110 38.2
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 8.1e-10 71.2 58 62.1
arahy.Tifrunner.gnm1.ann1.MNN8Y6 Arachis hypogaea HOM05D003845 ORTHO05D004161 1.4e-09 70.5 63 61.9
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 1.8e-09 70.1 56 51.8
ClCG11G005420 Citrullus lanatus HOM05D003845 ORTHO05D004161 3.1e-09 69.3 50 74.0
CSS0032645 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 8.9e-09 67.8 39 84.6
Lsat_1_v5_gn_7_94541 Lactuca sativa HOM05D003845 ORTHO05D004161 1.5e-08 67.0 41 78.0
Lsat_1_v5_gn_8_96981 Lactuca sativa HOM05D001957 ORTHO05D004161 1.5e-08 67.0 41 80.5
RcHm_v2.0_Chr2g0166401 Rosa chinensis HOM05D003845 ORTHO05D004161 1.5e-08 67.0 53 58.5
arahy.Tifrunner.gnm1.ann1.5G22ZR Arachis hypogaea HOM05D021257 ORTHO05D004161 1.7e-07 63.5 126 34.1
MBI02_g02968_MAGBIO Magnolia biondii HOM05D003845 ORTHO05D004161 2.9e-07 62.8 45 68.9
Actinidia17346 Actinidia chinensis HOM05D003226 ORTHO05D005723 7.1e-06 58.2 32 87.5
Lsat_1_v5_gn_4_6280 Lactuca sativa HOM05D003372 ORTHO05D025751 9.2e-06 57.8 37 75.7


User provided reference genes

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