Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 2179.1 1128 100.0
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 2162.5 1128 99.4
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 1978.0 1123 91.0
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 1878.2 1133 86.1
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 1877.4 1128 86.4
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 1842.0 1131 84.4
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 1821.6 1129 82.8
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 1796.9 1126 82.0
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 1796.6 1130 81.5
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 1795.4 1180 79.2
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 1790.0 1127 81.7
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 1786.5 1127 81.6
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 1785.0 1123 81.6
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 1781.9 1129 81.2
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 1771.9 1124 81.2
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 1770.0 1129 80.3
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 1769.6 1129 80.8
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 1769.2 1134 80.9
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 1768.1 1129 80.2
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 1766.1 1129 80.5
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 1758.8 1124 80.2
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 1743.8 1126 79.9
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 1742.2 1124 79.9
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 1741.5 1129 78.4
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 1741.1 1129 78.5
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 1735.7 1128 79.8
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 1733.0 1126 79.7
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 1726.1 1128 79.3
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 1724.1 1126 78.6
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 1723.4 1127 79.1
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 1723.0 1128 78.0
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 1716.4 1128 77.6
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 1713.4 1131 78.0
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 1711.8 1126 78.4
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 1706.0 1128 78.4
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 1704.1 1285 72.5
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 1699.9 1131 77.7
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 1698.7 1119 77.9
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 1692.6 1126 77.3
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 1692.6 1129 76.6
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 1687.9 1125 76.2
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 1686.8 1127 76.8
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 1682.5 1126 77.4
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 1681.4 1126 77.6
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 1676.4 1129 77.2
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 1671.0 1179 75.1
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 1652.1 1124 74.9
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 1634.4 1128 74.8
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 1627.5 1169 73.0
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 1605.1 1296 67.2
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 1595.9 1129 72.9
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 1591.2 1129 72.9
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 1588.5 1129 72.5
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 1587.0 1324 66.8
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 1579.7 1129 72.3
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 1578.1 1129 72.0
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 1577.8 1128 76.1
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 1576.2 1129 72.1
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 1575.5 1116 73.6
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 1575.5 1116 73.6
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 1565.8 1129 71.9
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 1565.4 1129 71.9
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 1561.6 1129 71.6
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 1558.5 1129 71.5
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 1558.5 1124 71.6
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 1556.2 1129 71.5
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 1556.2 1130 71.5
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 1553.1 1125 73.1
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 1491.9 1121 69.5
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 1441.4 1107 69.6
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 1437.6 966 76.0
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 1424.8 1122 67.4
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 1418.3 1174 65.6
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1402.1 1118 65.7
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1382.5 1124 65.0
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 0.0e+00 1291.9 914 73.2
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 1239.6 835 75.9
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1209.1 1127 58.9
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 0.0e+00 1205.3 1124 56.8
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 1184.1 2048 40.4
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 0.0e+00 1166.8 1031 60.5
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 0.0e+00 1150.2 1129 55.8
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 2.3e-306 1055.8 831 65.8
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 2.4e-303 1045.8 1126 50.1
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 1.3e-301 1040.0 1104 51.3
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 1.1e-297 1026.9 690 78.6
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 6.9e-295 1017.7 762 69.9
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 6.9e-287 991.1 650 77.1
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.2e-283 980.3 756 67.5
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 1.7e-277 959.9 1121 48.5
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 5.9e-262 908.3 601 76.9
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 2.9e-232 809.7 618 67.8
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 9.9e-225 784.6 726 58.7
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.2e-215 752.7 441 88.0
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 2.5e-212 743.4 579 67.5
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 5.8e-209 732.3 639 60.6
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 3.1e-194 683.3 469 76.1
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 2.5e-180 637.1 430 77.7
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 1.2e-174 618.2 386 81.3
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 3.6e-166 590.1 373 80.2
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 2.9e-144 517.3 412 63.8
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 2.9e-144 517.3 360 73.9
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 1.6e-129 468.4 422 61.4
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 1.2e-121 442.2 362 69.6
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 5.0e-120 436.8 288 76.4
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 5.0e-120 436.8 811 37.1
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 6.4e-115 419.9 264 81.8
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.2e-97 362.5 293 63.1
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 1.7e-91 342.0 286 67.1
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 2.3e-80 305.1 315 56.5
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 8.4e-75 286.6 422 45.7
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 2.6e-68 265.0 160 84.4
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 1.4e-64 252.7 1208 26.0
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 3.1e-61 241.5 169 76.3
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 6.9e-61 240.4 157 79.0
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 3.2e-58 231.5 1444 23.1
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 1.1e-55 223.0 187 69.0
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 1.5e-55 222.6 180 71.7
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 1.5e-55 222.6 180 71.7
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 1.5e-55 222.6 180 71.7
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 4.8e-54 217.6 125 88.8
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.0e-52 212.2 119 89.9
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 7.7e-44 183.7 129 79.1
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 5.4e-29 134.4 116 67.2
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 7.2e-26 124.0 69 92.8
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 5.2e-24 117.9 96 64.6
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 3.5e-20 105.1 50 92.0
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.7e-19 102.8 55 89.1
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 8.6e-19 100.5 100 62.0
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 8.6e-19 100.5 75 69.3
Actinidia17345 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.5e-18 99.0 54 87.0
Actinidia17348 Actinidia chinensis HOM05D003226 ORTHO05D015784 2.5e-18 99.0 54 87.0
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 9.5e-18 97.1 77 66.2
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 4.7e-17 94.7 75 68.0
COL.COLO4_16180 Corchorus olitorius HOM05D003845 ORTHO05D004161 1.4e-16 93.2 53 84.9
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 2.3e-16 92.4 70 72.9
arahy.Tifrunner.gnm1.ann1.57NG5G Arachis hypogaea HOM05D003845 ORTHO05D004161 2.3e-16 92.4 52 84.6
arahy.Tifrunner.gnm1.ann1.395ZIT Arachis hypogaea HOM05D003845 ORTHO05D004161 3.0e-16 92.0 56 76.8
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 8.9e-16 90.5 70 67.1
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 1.2e-15 90.1 57 84.2
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 5.8e-15 87.8 62 69.4
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 1.7e-14 86.3 54 83.3
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 2.2e-14 85.9 55 72.7
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 1.1e-13 83.6 789 20.5
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.6e-12 79.7 42 92.9
Lsat_1_v5_gn_1_87981 Lactuca sativa HOM05D003845 ORTHO05D004161 1.7e-11 76.3 47 72.3
Pp3c9_4980 Physcomitrium patens HOM05D003845 ORTHO05D004161 5.0e-11 74.7 115 37.4
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 5.0e-11 74.7 51 76.5
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 2.5e-10 72.4 66 69.7
Mapoly0010s0133 Marchantia polymorpha HOM05D003845 ORTHO05D004161 4.3e-10 71.6 110 38.2
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 5.6e-10 71.2 58 62.1
arahy.Tifrunner.gnm1.ann1.MNN8Y6 Arachis hypogaea HOM05D003845 ORTHO05D004161 9.5e-10 70.5 63 61.9
ClCG11G005420 Citrullus lanatus HOM05D003845 ORTHO05D004161 2.1e-09 69.3 50 74.0
CSS0032645 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 6.2e-09 67.8 39 84.6
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 8.0e-09 67.4 60 68.3
Lsat_1_v5_gn_7_94541 Lactuca sativa HOM05D003845 ORTHO05D004161 1.1e-08 67.0 41 78.0
Lsat_1_v5_gn_8_96981 Lactuca sativa HOM05D001957 ORTHO05D004161 1.1e-08 67.0 41 80.5
MBI02_g02968_MAGBIO Magnolia biondii HOM05D003845 ORTHO05D004161 2.0e-07 62.8 45 68.9
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 3.4e-07 62.0 209 27.3
Actinidia17346 Actinidia chinensis HOM05D003226 ORTHO05D005723 4.9e-06 58.2 32 87.5
Lsat_1_v5_gn_4_6280 Lactuca sativa HOM05D003372 ORTHO05D025751 6.4e-06 57.8 37 75.7


User provided reference genes

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